ClCG08G006840 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G006840
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 19215077 .. 19215376 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTATTCGACGGCCAATATTCTAATTTTGGCTATTTTGGTAGCATCCATGGCTCTAAGGCTACCGTCGGAAACCACCGCAAGCGCCGTGGCTGACCCTTCTCCTCCTCCCCCGTCGCACTTGGCATTGGCGGCGCCGATATATAATTCACCTATAAAAGTTAGCCTTAAAGGCAAAGCAGCCTCAGCAGAAGAAAATAGAGATGATGAATCTGAACCACCATTGAAGGATGAAAAGAAGGGCAGAAAACCTTGGCCAAAGCAACCTGTCTCTAAATCTCCACCGCCTCCATTTTAG

mRNA sequence

ATGGGGTATTCGACGGCCAATATTCTAATTTTGGCTATTTTGGTAGCATCCATGGCTCTAAGGCTACCGTCGGAAACCACCGCAAGCGCCGTGGCTGACCCTTCTCCTCCTCCCCCGTCGCACTTGGCATTGGCGGCGCCGATATATAATTCACCTATAAAAGTTAGCCTTAAAGGCAAAGCAGCCTCAGCAGAAGAAAATAGAGATGATGAATCTGAACCACCATTGAAGGATGAAAAGAAGGGCAGAAAACCTTGGCCAAAGCAACCTGTCTCTAAATCTCCACCGCCTCCATTTTAG

Coding sequence (CDS)

ATGGGGTATTCGACGGCCAATATTCTAATTTTGGCTATTTTGGTAGCATCCATGGCTCTAAGGCTACCGTCGGAAACCACCGCAAGCGCCGTGGCTGACCCTTCTCCTCCTCCCCCGTCGCACTTGGCATTGGCGGCGCCGATATATAATTCACCTATAAAAGTTAGCCTTAAAGGCAAAGCAGCCTCAGCAGAAGAAAATAGAGATGATGAATCTGAACCACCATTGAAGGATGAAAAGAAGGGCAGAAAACCTTGGCCAAAGCAACCTGTCTCTAAATCTCCACCGCCTCCATTTTAG

Protein sequence

MGYSTANILILAILVASMALRLPSETTASAVADPSPPPPSHLALAAPIYNSPIKVSLKGKAASAEENRDDESEPPLKDEKKGRKPWPKQPVSKSPPPPF
Homology
[Close]
BLAST of ClCG08G006840 vs. TrEMBL
Match: A0A0A0K9K2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058720 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 8.5e-25
Identity = 63/99 (63.64%), Postives = 73/99 (73.74%), Query Frame = 1 

Query: 1   MGYSTANILILAILVASMALRLPSETTASAVADPSPPPPSHLALAAPIYNSPIKVSLKGK 60
           MG STANI+IL I VAS+ALRLP+ETTA A+ADP P     L     IYN+ +KV L  +
Sbjct: 1   MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLL----IYNTVMKVRLNDE 60

Query: 61  AASAEENRDDESEPPLKDEKKGRKPWPKQPVSKSPPPPF 100
           A S E + DDES+PPLK+EK  RKPWPK PVSKSPPPPF
Sbjct: 61  AGSGEGSGDDESDPPLKEEKGSRKPWPKNPVSKSPPPPF 95

[Close]
BLAST of ClCG08G006840 vs. NCBI nr
Match: gi|700190954|gb|KGN46158.1| (hypothetical protein Csa_6G058720 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-24
Identity = 63/99 (63.64%), Postives = 73/99 (73.74%), Query Frame = 1 

Query: 1   MGYSTANILILAILVASMALRLPSETTASAVADPSPPPPSHLALAAPIYNSPIKVSLKGK 60
           MG STANI+IL I VAS+ALRLP+ETTA A+ADP P     L     IYN+ +KV L  +
Sbjct: 1   MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRLL----IYNTVMKVRLNDE 60

Query: 61  AASAEENRDDESEPPLKDEKKGRKPWPKQPVSKSPPPPF 100
           A S E + DDES+PPLK+EK  RKPWPK PVSKSPPPPF
Sbjct: 61  AGSGEGSGDDESDPPLKEEKGSRKPWPKNPVSKSPPPPF 95

The following BLAST results are available for this feature:
BLAST of ClCG08G006840 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K9K2_CUCSA8.5e-2563.64Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058720 PE=4 SV=1[more]
BLAST of ClCG08G006840 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700190954|gb|KGN46158.1|1.2e-2463.64hypothetical protein Csa_6G058720 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G006840.1ClCG08G006840.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G006840Csa6G058720Cucumber (Chinese Long) v2cuwcgB509
ClCG08G006840Cla013833Watermelon (97103) v1wcgwmB400
ClCG08G006840Cla97C08G149540Watermelon (97103) v2wcgwmbB336
ClCG08G006840Bhi04G001384Wax gourdwcgwgoB624
ClCG08G006840CSPI06G05070Wild cucumber (PI 183967)cpiwcgB536
ClCG08G006840CsaV3_6G005400Cucumber (Chinese Long) v3cucwcgB529
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G006840Silver-seed gourdcarwcgB0066
ClCG08G006840Silver-seed gourdcarwcgB0803
ClCG08G006840Cucumber (Chinese Long) v3cucwcgB602
ClCG08G006840Cucurbita maxima (Rimu)cmawcgB273
ClCG08G006840Cucurbita maxima (Rimu)cmawcgB678
ClCG08G006840Cucurbita moschata (Rifu)cmowcgB265
ClCG08G006840Cucurbita moschata (Rifu)cmowcgB680
ClCG08G006840Melon (DHL92) v3.5.1mewcgB301
ClCG08G006840Cucurbita pepo (Zucchini)cpewcgB180
ClCG08G006840Cucurbita pepo (Zucchini)cpewcgB415
ClCG08G006840Bottle gourd (USVL1VR-Ls)lsiwcgB439
ClCG08G006840Melon (DHL92) v3.6.1medwcgB293