Cla97C07G137810 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C07G137810
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	SWIB/MDM2 domain superfamily protein
Location	Cla97Chr07 : 25429550 .. 25431282 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCCATCCAAAATTCAACTAAAATCTCATCTCTACAAGTTTCTCGGCATTCCTCTTGTTTCTCCCCGCGGCGATATTCCTATCTTGATTTCCAAGTTCCTCAAGCTCTATCAACCTCAGGCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTATCATGATTTTGCAGATTTTTTTAAGCTACTAATGCCTGAGAAACTCATGTGGTTTATTTCAGGAACGATTTCCCTTTCTTCTAGTTTTGGAGCTTAGGTTATAATGTAGTGATATTCTGATGAAGAAAACCTAACATATCGAGTGTACTAGATTCAAATTTTGAGTTTACAAGACTAGTTTCTACCTTCTGCTTCCCCTTCTTTATGAACAGACGCTTTTTCTCTTACTTTCCAGATTGTACTGGTGCAAATATCACTGTTATTATTGCTTGTTTTGAACTTCTCTTCGATCCTGTAGTCTGTTGTCTTGATGTTAATGCATCACTTTGATCAGTTATATTCTACGTCTGTTTGCTTAGGTAGCACTTCGTTTTATTGCTATTGTCTCATCTACTGTTCTCTTTGAGCTATTGCCTTAATGTAAATCTTTATTCACATGTTATATTGTCTTATCAGATTAATTAAATTAAAATTCTTTGCTAATAAGGGATCGGTTCTCTTTATTCCTGTTCCCACTACCTTAGTATTTGTATCATACTGCTTTAAGATGCGACAATTGAGGAGATTTATTTTTCTATGGAAATTTATTTATATCTCCATCTTAGTGAACGAGGATCAAGTGGAGAGGGACAAGTTGGTTGAGAGTGATTGGTAAAATAATATTCCAATTCTAATGTTGAACTATGTTATGGGACAACTTTTAAGCCTTTAAGATTAATGGTAAGTGGCTGATGGTTGTTGTACTTCAGAAAGGAAAGGGAGAATGTGACTGCAGTGCAGAAATTGGCAAACGCTTATTGGAGAAAAGGGAAGACTGGAATTGGAGAGAAGTAAAAATGCTTTATTAATTAAGTGGTTAGTTTGTTTGAACAGATGACTTTTCTGTGTATTGGGATTACTGGAAGATAAAGACCGTATGGTGAATTTACTACGCTGATAATTTCAGTTGACTGTTCCTTCCGGAATAGAGGCATAGAGAGATGGAAAGAGAGAAGCTTAATTAGATTCAAACTTGAAGACCTCAAATAACTCAAACTGGGTGGAAGCAAATCCTAAAATAAAACAAATGCTGCTGTAAATTATTGGCAAACACTGAAATTATTACTCATAATACCTTGTAGTTTTAGTTATCAGGAAAAGTGTTTTAGATTTCGTCCTTCAAATAGGATTTTTTCCGACTAAACTTCTGTTCCCAATCAACTTTGCTTAGTCTCACATTTGTTTTAGATTTGGCTTGTTCACTAAAAGGTATCAGTTAGAAATATTTGCTTGCTTGTGTATTTCTTTTTGGGATGGGATGGTTGATGTGCTGAAAAGTTCTTTGGTTTGCAGAGCCCTGGGATCGGAAAAGACAAGAACTGGGAGGAAAACTTAAAAGCCATATTACATGGTAAAGGCGGAATTGGAATAACAGGGGTTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGCACGTCAGAAAGATAACAGGTCATCAGGGATTTACCTTGGTTTCTCCATTGTTCTTTATATGTTTAAACCACACGTAAAACCACTGGATCTATGTCCATAA

mRNA sequence

ATGGTTCCATCCAAAATTCAACTAAAATCTCATCTCTACAAGTTTCTCGGCATTCCTCTTGTTTCTCCCCGCGGCGATATTCCTATCTTGATTTCCAAGTTCCTCAAGCTCTATCAACCTCAGAGCCCTGGGATCGGAAAAGACAAGAACTGGGAGGAAAACTTAAAAGCCATATTACATGGTAAAGGCGGAATTGGAATAACAGGGGTTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGCACGTCAGAAAGATAACAGGTCATCAGGGATTTACCTTGGTTTCTCCATTGTTCTTTATATGTTTAAACCACACGTAAAACCACTGGATCTATGTCCATAA

Coding sequence (CDS)

ATGGTTCCATCCAAAATTCAACTAAAATCTCATCTCTACAAGTTTCTCGGCATTCCTCTTGTTTCTCCCCGCGGCGATATTCCTATCTTGATTTCCAAGTTCCTCAAGCTCTATCAACCTCAGAGCCCTGGGATCGGAAAAGACAAGAACTGGGAGGAAAACTTAAAAGCCATATTACATGGTAAAGGCGGAATTGGAATAACAGGGGTTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGCACGTCAGAAAGATAACAGGTCATCAGGGATTTACCTTGGTTTCTCCATTGTTCTTTATATGTTTAAACCACACGTAAAACCACTGGATCTATGTCCATAA

Protein sequence

MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNRSSGIYLGFSIVLYMFKPHVKPLDLCP

Homology

[Close]

BLAST of Cla97C07G137810 vs. NCBI nr
Match: XP_022136393.1 (uncharacterized protein LOC111008113 [Momordica charantia])

HSP 1 Score: 149.1 bits (375), Expect = 1.0e-32
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 1   MVPSKIQLKSHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILH 60
           ++  K+Q K  L KFLGIPLVSPRGDIPILISKFLKLYQPQSPG+ KD+ WEENLKAIL 
Sbjct: 12  ILSKKLQFKPQLCKFLGIPLVSPRGDIPILISKFLKLYQPQSPGLRKDRIWEENLKAILC 71

Query: 61  GKGGIGITGVNKILSPQFNDPSLRNMEMARQKDNR 96
           GK G+G+  VNKILSPQFND SLRNMEM RQKD R
Sbjct: 72  GKDGVGMPEVNKILSPQFNDSSLRNMEMERQKDIR 106

[Close]

BLAST of Cla97C07G137810 vs. NCBI nr
Match: XP_019421169.1 (PREDICTED: uncharacterized protein LOC109331245 [Lupinus angustifolius] >OIV94395.1 hypothetical protein TanjilG_25457 [Lupinus angustifolius])

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 42/78 (53.85%), Postives = 54/78 (69.23%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S L KF+GIP  S R +I ++ISKFLKLY  +SPGI KDK WE+NL+ +L GK  IG   
Sbjct: 45  SELCKFIGIPQQS-RSEIALIISKFLKLYNFKSPGIKKDKIWEQNLQTLLRGKNSIGFPE 104

Query: 70  VNKILSPQFNDPSLRNME 88
           V KILSP+F+  ++   E
Sbjct: 105 VAKILSPEFSQGAINIKE 121

[Close]

BLAST of Cla97C07G137810 vs. NCBI nr
Match: XP_023880104.1 (uncharacterized protein LOC111992479 [Quercus suber] >POF22992.1 hypothetical protein CFP56_15669 [Quercus suber])

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-12
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S   KFL IP  S R +  +LISKFLKLY  QSPGI KDK WE+NL  +L GK  +G+  
Sbjct: 57  SEFRKFLNIPGTS-RSENALLISKFLKLYTAQSPGIKKDKIWEDNLNKLLRGKDRVGLPE 116

Query: 70  VNKILSPQFNDPSLRNMEMARQKDNR 96
           + K+LSPQFN     N E ++  DN+
Sbjct: 117 IAKLLSPQFNQQGGMNSE-SKTDDNK 140

[Close]

BLAST of Cla97C07G137810 vs. NCBI nr
Match: XP_019445132.1 (PREDICTED: uncharacterized protein LOC109348963 [Lupinus angustifolius] >OIW10782.1 hypothetical protein TanjilG_27728 [Lupinus angustifolius])

HSP 1 Score: 82.0 bits (201), Expect = 1.5e-12
Identity = 41/74 (55.41%), Postives = 53/74 (71.62%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S L KF+GIP  S R +I ++ISKFLKLY  +SPGI KDK WE+NL+ +L GK  IG   
Sbjct: 45  SELCKFIGIPQQS-RSEIALIISKFLKLYNFKSPGIKKDKIWEQNLQTLLRGKNSIGFPE 104

Query: 70  VNKILSPQFNDPSL 84
           V KILSP+F+  ++
Sbjct: 105 VAKILSPEFSQGAI 117

[Close]

BLAST of Cla97C07G137810 vs. NCBI nr
Match: XP_007223797.1 (uncharacterized protein LOC18794035 [Prunus persica] >ONI32194.1 hypothetical protein PRUPE_1G353500 [Prunus persica])

HSP 1 Score: 80.9 bits (198), Expect = 3.3e-12
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 1   MVPSKIQLK---SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKA 60
           ++ +K++ K   S L KFLGIP    R    +LIS+F+ LY  QSPGI KD+NWEENLK 
Sbjct: 23  VIAAKVKTKTCCSELCKFLGIP-ERTRSPTALLISRFISLYNHQSPGI-KDRNWEENLKT 82

Query: 61  ILHGKGGIGITGVNKILSPQF 79
           +LHGK  +G++ + ++LSP+F
Sbjct: 83  LLHGKNRVGLSEITRLLSPEF 101

[Close]

BLAST of Cla97C07G137810 vs. TrEMBL
Match: tr|A0A2N9FY31|A0A2N9FY31_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23399 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 9.0e-14
Identity = 45/86 (52.33%), Postives = 56/86 (65.12%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S   KFLGIP  S R    +LISKFLKLY  QSPGI KD  WE+NL  +LHGK  +G+  
Sbjct: 55  SEFRKFLGIPGTS-RSPNALLISKFLKLYTAQSPGIKKDNIWEDNLNKLLHGKDRVGLPE 114

Query: 70  VNKILSPQFNDPSLRNMEMARQKDNR 96
           + K+LSPQFN     N E ++ +DN+
Sbjct: 115 IAKLLSPQFNQKGGMNAE-SKTEDNK 138

[Close]

BLAST of Cla97C07G137810 vs. TrEMBL
Match: tr|A0A2P4MZQ3|A0A2P4MZQ3_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15669 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 7.6e-13
Identity = 44/86 (51.16%), Postives = 55/86 (63.95%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S   KFL IP  S R +  +LISKFLKLY  QSPGI KDK WE+NL  +L GK  +G+  
Sbjct: 57  SEFRKFLNIPGTS-RSENALLISKFLKLYTAQSPGIKKDKIWEDNLNKLLRGKDRVGLPE 116

Query: 70  VNKILSPQFNDPSLRNMEMARQKDNR 96
           + K+LSPQFN     N E ++  DN+
Sbjct: 117 IAKLLSPQFNQQGGMNSE-SKTDDNK 140

[Close]

BLAST of Cla97C07G137810 vs. TrEMBL
Match: tr|M5XHN2|M5XHN2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G353500 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-12
Identity = 40/81 (49.38%), Postives = 57/81 (70.37%), Query Frame = 0


Query: 1   MVPSKIQLK---SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKA 60
           ++ +K++ K   S L KFLGIP    R    +LIS+F+ LY  QSPGI KD+NWEENLK 
Sbjct: 23  VIAAKVKTKTCCSELCKFLGIP-ERTRSPTALLISRFISLYNHQSPGI-KDRNWEENLKT 82

Query: 61  ILHGKGGIGITGVNKILSPQF 79
           +LHGK  +G++ + ++LSP+F
Sbjct: 83  LLHGKNRVGLSEITRLLSPEF 101

[Close]

BLAST of Cla97C07G137810 vs. TrEMBL
Match: tr|A0A2P6PZJ6|A0A2P6PZJ6_ROSCH (Putative SWIB/MDM2 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0304331 PE=4 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 2.2e-12
Identity = 41/89 (46.07%), Postives = 63/89 (70.79%), Query Frame = 0


Query: 4   SKIQLKS---HLYKFLGIPLVSPRGDIP--ILISKFLKLYQPQSPGIGKDKNWEENLKAI 63
           SK+++K+    + KFLGIP  S R   P  +LISKF++L+  QSPGI KD+NWE+NLK +
Sbjct: 26  SKLKVKACSPEVCKFLGIPDPSDRSRSPTALLISKFIRLHNNQSPGI-KDRNWEQNLKTL 85

Query: 64  LHGKGGIGITGVNKILSPQFNDPSLRNME 88
           LHGK  +G+  V ++LSP+F   ++++ +
Sbjct: 86  LHGKDRVGLPEVTRLLSPEFTYSTIKSTD 113

[Close]

BLAST of Cla97C07G137810 vs. TrEMBL
Match: tr|A0A1S3UFY8|A0A1S3UFY8_VIGRR (uncharacterized protein LOC106764991 OS=Vigna radiata var. radiata OX=3916 GN=LOC106764991 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 2.4e-11
Identity = 40/87 (45.98%), Postives = 57/87 (65.52%), Query Frame = 0


Query: 10  SHLYKFLGIPLVSPRGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITG 69
           S L  FLGIP  S R +I ++ISKF+KLY  +SPGI KDK WE+NL+ +L G+  +G   
Sbjct: 32  SELCTFLGIPRHS-RSEIALIISKFIKLYNFRSPGIKKDKIWEQNLQNLLRGRNSVGFPE 91

Query: 70  VNKILSPQFNDPSL--RNMEMARQKDN 95
           + KILSP+F+  ++  ++  M    DN
Sbjct: 92  IAKILSPEFSQGAINVKDNNMDSSMDN 117

[Close]

BLAST of Cla97C07G137810 vs. TAIR10
Match: AT1G31760.1 (SWIB/MDM2 domain superfamily protein)

HSP 1 Score: 43.5 bits (101), Expect = 1.1e-04
Identity = 20/55 (36.36%), Postives = 33/55 (60.00%), Query Frame = 0


Query: 24  RGDIPILISKFLKLYQPQSPGIGKDKNWEENLKAILHGKGGIGITGVNKILSPQF 79
           RG     + +++KL+  Q+P   K+ + ++ LK I  GK  +GIT + K+LSP F
Sbjct: 54  RGSALKKVWEYVKLHNLQNPANKKEIHCDDKLKTIFDGKDKVGITEIMKLLSPHF 108

The following BLAST results are available for this feature:

BLAST of Cla97C07G137810 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136393.1	1.0e-32	76.84	uncharacterized protein LOC111008113 [Momordica charantia]	[more]
XP_019421169.1	1.1e-12	53.85	PREDICTED: uncharacterized protein LOC109331245 [Lupinus angustifolius] >OIV9439...	[more]
XP_023880104.1	1.1e-12	51.16	uncharacterized protein LOC111992479 [Quercus suber] >POF22992.1 hypothetical pr...	[more]
XP_019445132.1	1.5e-12	55.41	PREDICTED: uncharacterized protein LOC109348963 [Lupinus angustifolius] >OIW1078...	[more]
XP_007223797.1	3.3e-12	49.38	uncharacterized protein LOC18794035 [Prunus persica] >ONI32194.1 hypothetical pr...	[more]

BLAST of Cla97C07G137810 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9FY31\|A0A2N9FY31_FAGSY	9.0e-14	52.33	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS23399 PE=4 SV=1	[more]
tr\|A0A2P4MZQ3\|A0A2P4MZQ3_QUESU	7.6e-13	51.16	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_15669 PE=4 SV=1	[more]
tr\|M5XHN2\|M5XHN2_PRUPE	2.2e-12	49.38	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G353500 PE=4 SV=1	[more]
tr\|A0A2P6PZJ6\|A0A2P6PZJ6_ROSCH	2.2e-12	46.07	Putative SWIB/MDM2 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiO...	[more]
tr\|A0A1S3UFY8\|A0A1S3UFY8_VIGRR	2.4e-11	45.98	uncharacterized protein LOC106764991 OS=Vigna radiata var. radiata OX=3916 GN=LO...	[more]

BLAST of Cla97C07G137810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C07G137810 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G31760.1	1.1e-04	36.36	SWIB/MDM2 domain superfamily protein	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C07G137810.1	Cla97C07G137810.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C07G137810	ClCG07G011090	Watermelon (Charleston Gray)	wcgwmbB307
Cla97C07G137810	CmaCh16G005040	Cucurbita maxima (Rimu)	cmawmbB350
Cla97C07G137810	CmoCh16G005510	Cucurbita moschata (Rifu)	cmowmbB335
Cla97C07G137810	CsGy4G006880	Cucumber (Gy14) v2	cgybwmbB304
Cla97C07G137810	Carg11419	Silver-seed gourd	carwmbB0682

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C07G137810	Silver-seed gourd	carwmbB0043
Cla97C07G137810	Cucurbita maxima (Rimu)	cmawmbB782
Cla97C07G137810	Cucurbita moschata (Rifu)	cmowmbB756
Cla97C07G137810	Wild cucumber (PI 183967)	cpiwmbB331
Cla97C07G137810	Cucumber (Chinese Long) v3	cucwmbB329
Cla97C07G137810	Cucumber (Chinese Long) v2	cuwmbB321
Cla97C07G137810	Bottle gourd (USVL1VR-Ls)	lsiwmbB411
Cla97C07G137810	Melon (DHL92) v3.6.1	medwmbB484
Cla97C07G137810	Melon (DHL92) v3.6.1	medwmbB485
Cla97C07G137810	Melon (DHL92) v3.6.1	medwmbB493
Cla97C07G137810	Melon (DHL92) v3.5.1	mewmbB491
Cla97C07G137810	Melon (DHL92) v3.5.1	mewmbB500
Cla97C07G137810	Watermelon (97103) v1	wmwmbB168
Cla97C07G137810	Wax gourd	wgowmbB219