Carg11419 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg11419
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	SWIB/MDM2 domain protein
Location	Cucurbita_argyrosperma_scaffold_025 : 927099 .. 929558 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AAAGTGGGGAATTGCAGAGGAAGCCATGGCAGCCACCGGCGGCGGAAATGAGAAATGTTTGACAAGAAGCTTGAGATTCAAAGGTCCGATCACGATCACGATCACGATCACGATCACGATCACGATCACGATCACGATCACGATCAAAGCTGGTGACTGGTAAAGAAATCTCGAAAATCCATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAAGCCAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCATTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACATCAGGTCTCTCTCTCCATCTCTCATGATTTTGCAGAATTTTTAAGCTACGAATGATGAGATTTTTTTTTTTTTTTTTTTTTTACGCCTGGCCTATTTCAGGGGAACGACTTTCCTTTCTTCAAGTTTTTGAAATTAGGTTTTAATGTAATGATATTCCGATGAAGAAAATCTAATATACTGAATGTATTTGGTTCGATTTTTGAGTTTATAGTGCTACTTTCTACCTTCTGCTTCCCGTTCTTTATGATCGGACTCCTTTTCTTTTACTTTCCAGTTTGTACTGATGTATAAGTATCACTGCTGTTATTGCTGGTGTTCATCTTGTCTTTCATTCTGTAATCTGTTGTCTTGACGTTAATACATCACTTTGATCAGTTGTATTGTACGTCTGTTTTCTTAGCAAACACATCTGTCGGTTGCAATTGTCTTGTCCACTGCTGACTTTTAGCTATTGCCATTATGTAAATCTTTATTCACATGTTAATTGTCTTATCAGATTAGCTAAATCAAAATTCTTTGCTAATAAAGGATCGGTTTGCTTTATTCCTGTTCCCACTACCTTAGTATTGGTATCATATTGCTTTAAGATGCGACAATGAGGAGATTTACTTTTCTAAGGAAATTCATATATCTCCGTCTTAGTGAATGAGGATTTAATGGAGAGGGGACAAGTTGGCTGAGAATGATTGGTAAGATAATATTCCAATTTTAATGTTGAACTATGTTTTGGGACAAGTTTAAGCCTTTAAGAATAATGGTTTGTGGCAGATGGTTGTTGTATTTCAGAAAGGAAAGGGAGAATGTGATTGCCGTGCAGAAATTCACAAACGCCTGTTGGAGAAAAGGGAAGCCTGGAATTGGAGAGAAGTAAAAGAGATTCATTAACTTAGTGGTTAGCTTGTTTGAGCAGATGACCTTCTGTGTATTTTGATTACTGAAAGATAAAGAAAGTATTATAACAGGTGAATCTACTATGTTGAGAATTTCAGTTGACAGTTCCTTTAGGAAGAGAGTGGGAGGTTGATAGAAGAAGAGAGAACCTTAGTTATATTCAAACTTGAAGACCCTAAATATCTCGAACCGTGCAGAAGCAAATCCGACAATCAGACAAATGTTGCTGTGAACTATTGGCAAACTCTAGGAAGCACAGATACAACATGACATTGACACAGCAAGGGACGTTTATTAAAATATACATTTTAAAAATTATATATCATTTTTGTATTAGAAGGAAATTCAAAGTCAATGAGTTTATACATCTAAATGCTTAAAAATTAGTTTGATTTATTTTACTTTAAGTGTTTGATGCATGTTTAACAAATATTGGATCTACTTTGACTTTGTATGACTAGTGTCTACAACATCTATTGCACTAACAAGTGTTTGGTACGTGTCTAACAAGTGTTGCAGTGTCAAGTGTCCGACACATGTCAGACATGGATACGTTAGCCATACTAAAGTGTTCGTGCTTCTTAGGGCATACTCCTCAAATACTGAAATTATTACTCATTATTCCCTTTAGTTTTTGCGCAAAGAGTTTTAGATTTCATCCTGAAAATAGGATTATCTTGATTGAACTTCTATTCTTGATCAACTTTGTTTAGCCTCACATTTATTTTAGATTTGTTTTGTTCACTAAAAGGTAGAAATATTTGCTTGCTCGTGTATTTCTTTTTGGGATGGAATTGTAGATGTGTTGAGAGTTATTTGGTATGCAGAGCCCTGGGATTGGAAAGGACTGGACCTGGGAAGAAAACTTAAAAGCCACATTACACGGTAAAGACAGAGTTGGGATGGCAGAGATTAACAAAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAATTCTCTCTCCCCAATTCAATGATCCAAGTCTAAGAAATATGGAAATGGAACGTCAAAAAGATATCAGGTCATCAGGGATCTACATTGTTTTTTCTTCATCTTTTTTTGTTAAAACCACACGTGAAATCGTTGCTCTTTTTCTTTCCTAAACTATGTCTTGTTCAGGTAATAACATGCTAAACTTTGTCCTGTATTTACATCATTTTCCTTTTTTCTTTTCCCTACATGTTAGGCATGACAGCAGACGATGGCAAAGTGGATAGGCTCTGGCCATTTTGGTAA

mRNA sequence

AAAGTGGGGAATTGCAGAGGAAGCCATGGCAGCCACCGGCGGCGGAAATGAGAAATGTTTGACAAGAAGCTTGAGATTCAAAGGTCCGATCACGATCACGATCACGATCACGATCACGATCACGATCACGATCACGATCACGATCAAAGCTGGTGACTGGTAAAGAAATCTCGAAAATCCATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAAGCCAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCATTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACATCAGAGCCCTGGGATTGGAAAGGACTGGACCTGGGAAGAAAACTTAAAAGCCACATTACACGGCATGACAGCAGACGATGGCAAAGTGGATAGGCTCTGGCCATTTTGGTAA

Coding sequence (CDS)

ATGGCTCCTGCCAAGATTAGTGTCGGTGCTCGTCTTCTAAGCCAAAAAATACAACTGAAACCTCAACTCTGCAAGTTCCTCGGGATACCTCTCATTGCTCCTCGCGGCGATATTCCGATCTTGATTACTAAATTTCTCAAGTTCTATCAACATCAGAGCCCTGGGATTGGAAAGGACTGGACCTGGGAAGAAAACTTAAAAGCCACATTACACGGCATGACAGCAGACGATGGCAAAGTGGATAGGCTCTGGCCATTTTGGTAA

Protein sequence

MAPAKISVGARLLSQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHGMTADDGKVDRLWPFW

Homology

[Close]

BLAST of Carg11419 vs. NCBI nr
Match: XP_022136393.1 (uncharacterized protein LOC111008113 [Momordica charantia])

HSP 1 Score: 115.5 bits (288), Expect = 8.8e-23
Identity = 54/72 (75.00%), Postives = 62/72 (86.11%), Query Frame = 0


Query: 1  MAPAKISVGARLLSQKIQLKPQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDW 60
          MAPAKI+V A +LS+K+Q KPQLCKFLGIPL++PRGDIPILI+KFLK YQ QSPG+ KD 
Sbjct: 1  MAPAKITVAAHILSKKLQFKPQLCKFLGIPLVSPRGDIPILISKFLKLYQPQSPGLRKDR 60

Query: 61 TWEENLKATLHG 73
           WEENLKA L G
Sbjct: 61 IWEENLKAILCG 72

[Close]

BLAST of Carg11419 vs. NCBI nr
Match: XP_016647358.1 (PREDICTED: uncharacterized protein LOC103321138 isoform X2 [Prunus mume])

HSP 1 Score: 66.6 bits (161), Expect = 4.7e-08
Identity = 36/75 (48.00%), Postives = 48/75 (64.00%), Query Frame = 0


Query: 1  MAPAKISVGARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIG 60
          MA A     +++++ K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI 
Sbjct: 14 MAAAAAMPESKVIAAKVKTKNCCSELCKFLGIP-ERTRSPTALLISRFISLYNHQSPGI- 73

Query: 61 KDWTWEENLKATLHG 73
          KD TWEENLK  LHG
Sbjct: 74 KDRTWEENLKTLLHG 86

[Close]

BLAST of Carg11419 vs. NCBI nr
Match: PQM36700.1 (uncharacterized protein Pyn_40121 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 66.2 bits (160), Expect = 6.1e-08
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 10 ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENL 69
          A++++ K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENL
Sbjct: 22 AKVIAAKVKTKTCCSELCKFLGIP-ERTRSPTALLISRFISLYNHQSPGI-KDRTWEENL 81

Query: 70 KATLHG 73
          K  LHG
Sbjct: 82 KTLLHG 85

[Close]

BLAST of Carg11419 vs. NCBI nr
Match: PQQ05948.1 (uncharacterized protein Pyn_14846 [Prunus yedoensis var. nudiflora])

HSP 1 Score: 66.2 bits (160), Expect = 6.1e-08
Identity = 34/66 (51.52%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 10 ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENL 69
          A++++ K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENL
Sbjct: 22 AKVIAAKVKTKTTCSELCKFLGIP-EPTRSPTALLISRFISLYNHQSPGI-KDRTWEENL 81

Query: 70 KATLHG 73
          K  LHG
Sbjct: 82 KTLLHG 85

[Close]

BLAST of Carg11419 vs. NCBI nr
Match: XP_008221128.1 (PREDICTED: uncharacterized protein LOC103321138 isoform X1 [Prunus mume])

HSP 1 Score: 65.1 bits (157), Expect = 1.4e-07
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = 0


Query: 10 ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENL 69
          +++++ K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD TWEENL
Sbjct: 25 SKVIAAKVKTKNCCSELCKFLGIP-ERTRSPTALLISRFISLYNHQSPGI-KDRTWEENL 84

Query: 70 KATLHG 73
          K  LHG
Sbjct: 85 KTLLHG 88

[Close]

BLAST of Carg11419 vs. TrEMBL
Match: tr|M5XHN2|M5XHN2_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G353500 PE=4 SV=1)

HSP 1 Score: 63.2 bits (152), Expect = 3.4e-07
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = 0


Query: 10 ARLLSQKIQLK---PQLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENL 69
          +++++ K++ K    +LCKFLGIP    R    +LI++F+  Y HQSPGI KD  WEENL
Sbjct: 21 SKVIAAKVKTKTCCSELCKFLGIP-ERTRSPTALLISRFISLYNHQSPGI-KDRNWEENL 80

Query: 70 KATLHG 73
          K  LHG
Sbjct: 81 KTLLHG 84

[Close]

BLAST of Carg11419 vs. TrEMBL
Match: tr|A0A2P6PZJ6|A0A2P6PZJ6_ROSCH (Putative SWIB/MDM2 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiOBHm_Chr6g0304331 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.3e-06
Identity = 35/73 (47.95%), Postives = 46/73 (63.01%), Query Frame = 0


Query: 2  APAKISVGARLLSQKIQLKPQLCKFLGIPLIAPRGDIP--ILITKFLKFYQHQSPGIGKD 61
          A A +SV    L  K    P++CKFLGIP  + R   P  +LI+KF++ + +QSPGI KD
Sbjct: 17 AAAALSVTESKLKVK-ACSPEVCKFLGIPDPSDRSRSPTALLISKFIRLHNNQSPGI-KD 76

Query: 62 WTWEENLKATLHG 73
            WE+NLK  LHG
Sbjct: 77 RNWEQNLKTLLHG 87

[Close]

BLAST of Carg11419 vs. TrEMBL
Match: tr|A0A1S3VPS1|A0A1S3VPS1_VIGRR (uncharacterized protein LOC106777242 isoform X1 OS=Vigna radiata var. radiata OX=3916 GN=LOC106777242 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 6.5e-06
Identity = 26/51 (50.98%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 22 QLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG 73
          +LC FLGIP  + R +I ++I+KF+K Y  +SPGI KD  WE+NL++ L G
Sbjct: 33 ELCNFLGIPRHS-RSEIALIISKFIKLYNFRSPGIKKDKIWEQNLQSLLRG 82

[Close]

BLAST of Carg11419 vs. TrEMBL
Match: tr|A0A0L9UR32|A0A0L9UR32_PHAAN (Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g066100 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 22 QLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG 73
          +LC FLGIP  + R +I ++++KF+K Y  +SPGI KD  WE+NL++ L G
Sbjct: 33 ELCNFLGIPRHS-RSEIALILSKFIKLYNFRSPGIKKDKIWEQNLQSLLRG 82

[Close]

BLAST of Carg11419 vs. TrEMBL
Match: tr|A0A0S3T3J4|A0A0S3T3J4_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G134000 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.1e-05
Identity = 25/51 (49.02%), Postives = 37/51 (72.55%), Query Frame = 0


Query: 22 QLCKFLGIPLIAPRGDIPILITKFLKFYQHQSPGIGKDWTWEENLKATLHG 73
          +LC FLGIP  + R +I ++++KF+K Y  +SPGI KD  WE+NL++ L G
Sbjct: 33 ELCNFLGIPRHS-RSEIALILSKFIKLYNFRSPGIKKDKIWEQNLQSLLRG 82

The following BLAST results are available for this feature:

BLAST of Carg11419 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022136393.1	8.8e-23	75.00	uncharacterized protein LOC111008113 [Momordica charantia]	[more]
XP_016647358.1	4.7e-08	48.00	PREDICTED: uncharacterized protein LOC103321138 isoform X2 [Prunus mume]	[more]
PQM36700.1	6.1e-08	51.52	uncharacterized protein Pyn_40121 [Prunus yedoensis var. nudiflora]	[more]
PQQ05948.1	6.1e-08	51.52	uncharacterized protein Pyn_14846 [Prunus yedoensis var. nudiflora]	[more]
XP_008221128.1	1.4e-07	50.00	PREDICTED: uncharacterized protein LOC103321138 isoform X1 [Prunus mume]	[more]

BLAST of Carg11419 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of Carg11419 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg11419 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|M5XHN2\|M5XHN2_PRUPE	3.4e-07	48.48	Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_1G353500 PE=4 SV=1	[more]
tr\|A0A2P6PZJ6\|A0A2P6PZJ6_ROSCH	1.3e-06	47.95	Putative SWIB/MDM2 domain-containing protein OS=Rosa chinensis OX=74649 GN=RchiO...	[more]
tr\|A0A1S3VPS1\|A0A1S3VPS1_VIGRR	6.5e-06	50.98	uncharacterized protein LOC106777242 isoform X1 OS=Vigna radiata var. radiata OX...	[more]
tr\|A0A0L9UR32\|A0A0L9UR32_PHAAN	1.1e-05	49.02	Uncharacterized protein OS=Phaseolus angularis OX=3914 GN=LR48_Vigan06g066100 PE...	[more]
tr\|A0A0S3T3J4\|A0A0S3T3J4_PHAAN	1.1e-05	49.02	Uncharacterized protein OS=Vigna angularis var. angularis OX=157739 GN=Vigan.10G...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg11419-RA	Carg11419-RA	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg11419	CmaCh16G005040	Cucurbita maxima (Rimu)	carcmaB0924
Carg11419	CmoCh16G005510	Cucurbita moschata (Rifu)	carcmoB0898
Carg11419	Cp4.1LG14g02920	Cucurbita pepo (Zucchini)	carcpeB0926
Carg11419	Cla97C07G137810	Watermelon (97103) v2	carwmbB0682

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg11419	Watermelon (Charleston Gray)	carwcgB0637
Carg11419	Watermelon (97103) v1	carwmB0652
Carg11419	Wax gourd	carwgoB0770
Carg11419	Silver-seed gourd	carcarB050
Carg11419	Silver-seed gourd	carcarB052
Carg11419	Cucumber (Gy14) v2	carcgybB0652
Carg11419	Cucumber (Gy14) v1	carcgyB0732
Carg11419	Cucurbita maxima (Rimu)	carcmaB0927
Carg11419	Cucurbita moschata (Rifu)	carcmoB0902
Carg11419	Cucurbita pepo (Zucchini)	carcpeB0929
Carg11419	Wild cucumber (PI 183967)	carcpiB0687
Carg11419	Cucumber (Chinese Long) v2	carcuB0677
Carg11419	Cucumber (Chinese Long) v3	carcucB0689
Carg11419	Bottle gourd (USVL1VR-Ls)	carlsiB596
Carg11419	Melon (DHL92) v3.5.1	carmeB0652
Carg11419	Melon (DHL92) v3.5.1	carmeB0653
Carg11419	Melon (DHL92) v3.6.1	carmedB0662
Carg11419	Melon (DHL92) v3.6.1	carmedB0663
Carg11419	Melon (DHL92) v3.6.1	carmedB0664