Cla97C05G099760 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G099760
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr05 : 28742503 .. 28744325 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAACAAGAAAAGGGATAACATTGATTTTCTTGCTGTTTTGTTCTACCATGCCCATTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGGTCACTATCCCTTTCCAATCTCTTAAGCAAATTCAATCACTCAGTTTTATTCATTCTCTATGGTTTTACCACTAAATCTTCTCTGTATATATCTTCATTTTTGGGACACACAATTTCAAAATTCAACCAAACACTAAGCAACATGAAATCATTTCTTCCTATCTAGTTCTAAATCAAAAGTCTAGTCTCCCCTTTCCTCCTTAAAAGAAAATTATTCAGTGGCTGCCTCATAATAATCTAACATAACCTAATGTTGTTAGAGGTGAATTCAATAATTTGCAACCTCTAGATCCAATAGTGAAAAGAATGTCCACACAGCTCACCCAACTATTTTTCCTTCAAAAGCTCAGAAGATCACCATTATGTGTGTTTTTGTTGGTGCTGAGTTTATCTTCATTTTCTTCTCTTGAAAGACGTGAAAGGAAAAGTAAACTTCGGTAAATTGTCCATCTCAAAAGCTTAATCTTGTGGGTTACTGCAAAAGCTTAATCATACTAATACTAAAACTCTGCCCCAGTTCTAATTTTGTTATTATGCTAAAGAATCATTAGCTCATAAGTTTATGTTAGGATAATTTTAATTATAACAAATGCTTTGATCATAATCAAGCACCAAATAAAGTATGCACGACAAAGTTGAATAATAAGGCCGACAAGGAACAGAAATAAAGTGTGCATTCCAGATAACATGTGTGGGTGTGTATAAACGACAAATTTGCAATATTGAAGATCTAATGTGGAAAAGAAAAGAATAATAGGTGAATGAGGAGTGTTAGGTCAACATGTCTTTTACAATGTCGAATGATGATAAATATACAAATAGAATAAAGTTTAATATCGTGTGAATGGAGGGCCATAACAATGTATGGCTTTTCCACTAACTTTAAATCAAATCATGGTCTAGATCCTGCTACTCCGTACTGAAAGGAGTGATCAAATAATCAACTATGATATTTGTTGGTTTTATTTTAACGGTTATACTTAATAAAAACAAAGTTATCAAAAGATTTAAGTTTTTATTTATTTTAGGGTTAGATATAGCAAAATTTCAAGTTTCTATAGACTATGGTTGTCTCTCATTCATATATAGTAACATTTTGCTAGTAATTTTTTCATTTAAAACAATTATCCTTTATTTTCTAATACATATTGCTTACAAGTAGGATGGACGGTTGCAAAGATTTGGTGTTCTTTAGAAGTGTTTTCTATTATTATAGTTCAAAAACTTGTTCAATAAGCTCTTCCTACTCTTTATACTTTGTATTTAATTAAAGAATTTATACATTAATATTAAAAATATAATTTTAAACTACAGGGGTTGTTTTCTGTATCCAGAGTCTAATTACCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGACAGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAAGCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGGTACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAGCCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGGTTGTCTCCATAGGGACACAAGAAACATTGTTACAAACTTACATGTGCTGA

mRNA sequence

ATGGGAACAAGAAAAGGGATAACATTGATTTTCTTGCTGTTTTGTTCTACCATGCCCATTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGAGTCTAATTACCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGACAGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAAGCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGGTACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAGCCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGGTTGTCTCCATAGGGACACAAGAAACATTGTTACAAACTTACATGTGCTGA

Coding sequence (CDS)

ATGGGAACAAGAAAAGGGATAACATTGATTTTCTTGCTGTTTTGTTCTACCATGCCCATTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGAGTCTAATTACCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGACAGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAAGCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGGTACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAGCCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGGTTGTCTCCATAGGGACACAAGAAACATTGTTACAAACTTACATGTGCTGA

Protein sequence

MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHAGGGTTVIPVYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVMLISIEVSDIKVVSIGTQETLLQTYMC

Homology

[Close]

BLAST of Cla97C05G099760 vs. NCBI nr
Match: XP_008446752.1 (PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 2.4e-26
Identity = 101/138 (73.19%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 4   RKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYST 63
           R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY  + GK G  NQI RRYS 
Sbjct: 3   RRGIRLIFLLFCSTLAISS-AALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSA 62

Query: 64  SAITVSD---GIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQARHRQGRPHNAG 123
           SAITVS+      XXXXXXXXXXXXXXXXXXXXXXXX   VYAAGSAQARHRQGRPHNAG
Sbjct: 63  SAITVSNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPVYAAGSAQARHRQGRPHNAG 122

Query: 124 NGYDKNMGLLIATVLAVM 137
           NGY+ N GLL+A VLA +
Sbjct: 123 NGYENNTGLLVAAVLAAI 139

[Close]

BLAST of Cla97C05G099760 vs. NCBI nr
Match: XP_011655831.1 (PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus] >KGN52182.1 hypothetical protein Csa_5G613600 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 104/148 (70.27%), Postives = 114/148 (77.03%), Query Frame = 0


Query: 1   MGTRKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRR 60
           MG R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY ++HGK G  NQI+RR
Sbjct: 1   MGRRRGIRLIFLLFCSTLAISS-AALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRR 60

Query: 61  YSTSAITV----------SDGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQAR 120
           YS+SAITV               XXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQA 
Sbjct: 61  YSSSAITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQAH 120

Query: 121 HRQGRPHNAGNGYDKNMGLLIATVLAVM 137
           HRQGR HNAGN Y+ NMGLL+A VLA +
Sbjct: 121 HRQGRAHNAGNSYENNMGLLVAAVLAAI 147

[Close]

BLAST of Cla97C05G099760 vs. NCBI nr
Match: XP_022957462.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata])

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 86/137 (62.77%), Postives = 99/137 (72.26%), Query Frame = 0


Query: 1   MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYS 60
           MG R+ +TL+FLLFCST+P  S +AL QQILPTESNY  +T  E+HGKDG  N+I   YS
Sbjct: 1   MGRRRELTLMFLLFCSTIPAIS-SALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYS 60

Query: 61  TSAITVSDGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQARHRQGRPHNAGNG 120
             AITVS GI    XXXXXXXXXXXXXXXXXXXXXXXX           RQGR  NAGN 
Sbjct: 61  ARAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNH 120

Query: 121 YDKNMGLLIATVLAVML 138
           Y+ NMGLL+A+VLA ++
Sbjct: 121 YENNMGLLVASVLAAIV 136

[Close]

BLAST of Cla97C05G099760 vs. NCBI nr
Match: XP_022987717.1 (uncharacterized protein LOC111485159 [Cucurbita maxima])

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 84/136 (61.76%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 1   MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYS 60
           MG R+ ++L+FLLFCST+P  S+A   QQILPTE NY  +T  E+HG+DG  N+I   YS
Sbjct: 1   MGRRRELSLMFLLFCSTIPAISSAR-QQQILPTEPNYHQKTNAEKHGQDGVTNRISSIYS 60

Query: 61  TSAITVSDGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQARHRQGRPHNAGNG 120
             AITVS GI    XXXXXXXXXXXXXXXXXXXXXXXX          HRQGRP NAGN 
Sbjct: 61  ARAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHRQGRPRNAGNH 120

Query: 121 YDKNMGLLIATVLAVM 137
           Y+ NMGLL+A+VLA +
Sbjct: 121 YENNMGLLVASVLAAI 135

[Close]

BLAST of Cla97C05G099760 vs. NCBI nr
Match: XP_023517064.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.8 bits (260), Expect = 2.9e-19
Identity = 86/136 (63.24%), Postives = 98/136 (72.06%), Query Frame = 0


Query: 1   MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYS 60
           MG R+ +TL+FLLFCST+P  S +AL QQILPTESNY  +T  E+HGKDG  N+I   YS
Sbjct: 1   MGRRRELTLMFLLFCSTIPAIS-SALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYS 60

Query: 61  TSAITVSDGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQARHRQGRPHNAGNG 120
             AITVS GI    XXXXXXXXXXXXXXXXXXXXXXXX           RQGR  NAGN 
Sbjct: 61  ARAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNH 120

Query: 121 YDKNMGLLIATVLAVM 137
           Y+ NMGLL+A+VLA +
Sbjct: 121 YENNMGLLVASVLAAI 135

[Close]

BLAST of Cla97C05G099760 vs. TrEMBL
Match: tr|A0A1S3BFU8|A0A1S3BFU8_CUCME (uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 101/138 (73.19%), Postives = 109/138 (78.99%), Query Frame = 0


Query: 4   RKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYST 63
           R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY  + GK G  NQI RRYS 
Sbjct: 3   RRGIRLIFLLFCSTLAISS-AALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSA 62

Query: 64  SAITVSD---GIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQARHRQGRPHNAG 123
           SAITVS+      XXXXXXXXXXXXXXXXXXXXXXXX   VYAAGSAQARHRQGRPHNAG
Sbjct: 63  SAITVSNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPVYAAGSAQARHRQGRPHNAG 122

Query: 124 NGYDKNMGLLIATVLAVM 137
           NGY+ N GLL+A VLA +
Sbjct: 123 NGYENNTGLLVAAVLAAI 139

[Close]

BLAST of Cla97C05G099760 vs. TrEMBL
Match: tr|A0A0A0KUR6|A0A0A0KUR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.0e-26
Identity = 104/148 (70.27%), Postives = 114/148 (77.03%), Query Frame = 0


Query: 1   MGTRKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRR 60
           MG R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY ++HGK G  NQI+RR
Sbjct: 1   MGRRRGIRLIFLLFCSTLAISS-AALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRR 60

Query: 61  YSTSAITV----------SDGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQAR 120
           YS+SAITV               XXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQA 
Sbjct: 61  YSSSAITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQAH 120

Query: 121 HRQGRPHNAGNGYDKNMGLLIATVLAVM 137
           HRQGR HNAGN Y+ NMGLL+A VLA +
Sbjct: 121 HRQGRAHNAGNSYENNMGLLVAAVLAAI 147

The following BLAST results are available for this feature:

BLAST of Cla97C05G099760 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446752.1	2.4e-26	73.19	PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo]	[more]
XP_011655831.1	1.2e-25	70.27	PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus] >KGN52182.1 hy...	[more]
XP_022957462.1	2.2e-19	62.77	glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]	[more]
XP_022987717.1	2.2e-19	61.76	uncharacterized protein LOC111485159 [Cucurbita maxima]	[more]
XP_023517064.1	2.9e-19	63.24	glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of Cla97C05G099760 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3BFU8\|A0A1S3BFU8_CUCME	1.6e-26	73.19	uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=...	[more]
tr\|A0A0A0KUR6\|A0A0A0KUR6_CUCSA	8.0e-26	70.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1	[more]

BLAST of Cla97C05G099760 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C05G099760 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G099760.1	Cla97C05G099760.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 72..91
None	No IPR available	PANTHER	PTHR36245	FAMILY NOT NAMED	coord: 1..137

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G099760	Cla020823	Watermelon (97103) v1	wmwmbB207
Cla97C05G099760	ClCG05G018440	Watermelon (Charleston Gray)	wcgwmbB229

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G099760	Watermelon (97103) v2	wmbwmbB024
Cla97C05G099760	Watermelon (97103) v2	wmbwmbB142
Cla97C05G099760	Silver-seed gourd	carwmbB0107
Cla97C05G099760	Silver-seed gourd	carwmbB0146
Cla97C05G099760	Silver-seed gourd	carwmbB0994
Cla97C05G099760	Silver-seed gourd	carwmbB1029
Cla97C05G099760	Cucumber (Gy14) v2	cgybwmbB128
Cla97C05G099760	Cucumber (Gy14) v2	cgybwmbB207
Cla97C05G099760	Cucumber (Gy14) v1	cgywmbB025
Cla97C05G099760	Cucumber (Gy14) v2	cgybwmbB441
Cla97C05G099760	Cucumber (Gy14) v1	cgywmbB279
Cla97C05G099760	Cucumber (Gy14) v1	cgywmbB585
Cla97C05G099760	Cucurbita maxima (Rimu)	cmawmbB026
Cla97C05G099760	Cucurbita maxima (Rimu)	cmawmbB181
Cla97C05G099760	Cucurbita maxima (Rimu)	cmawmbB479
Cla97C05G099760	Cucurbita maxima (Rimu)	cmawmbB695
Cla97C05G099760	Cucurbita maxima (Rimu)	cmawmbB819
Cla97C05G099760	Cucurbita maxima (Rimu)	cmawmbB901
Cla97C05G099760	Cucurbita moschata (Rifu)	cmowmbB014
Cla97C05G099760	Cucurbita moschata (Rifu)	cmowmbB166
Cla97C05G099760	Cucurbita moschata (Rifu)	cmowmbB461
Cla97C05G099760	Cucurbita moschata (Rifu)	cmowmbB792
Cla97C05G099760	Cucurbita moschata (Rifu)	cmowmbB871
Cla97C05G099760	Wild cucumber (PI 183967)	cpiwmbB137
Cla97C05G099760	Wild cucumber (PI 183967)	cpiwmbB222
Cla97C05G099760	Wild cucumber (PI 183967)	cpiwmbB489
Cla97C05G099760	Cucumber (Chinese Long) v3	cucwmbB137
Cla97C05G099760	Cucumber (Chinese Long) v3	cucwmbB218
Cla97C05G099760	Cucumber (Chinese Long) v3	cucwmbB482
Cla97C05G099760	Cucumber (Chinese Long) v2	cuwmbB135
Cla97C05G099760	Cucumber (Chinese Long) v2	cuwmbB216
Cla97C05G099760	Cucumber (Chinese Long) v2	cuwmbB464
Cla97C05G099760	Bottle gourd (USVL1VR-Ls)	lsiwmbB144
Cla97C05G099760	Bottle gourd (USVL1VR-Ls)	lsiwmbB288
Cla97C05G099760	Bottle gourd (USVL1VR-Ls)	lsiwmbB436
Cla97C05G099760	Melon (DHL92) v3.6.1	medwmbB278
Cla97C05G099760	Melon (DHL92) v3.6.1	medwmbB319
Cla97C05G099760	Melon (DHL92) v3.6.1	medwmbB544
Cla97C05G099760	Melon (DHL92) v3.5.1	mewmbB293
Cla97C05G099760	Melon (DHL92) v3.5.1	mewmbB332
Cla97C05G099760	Melon (DHL92) v3.5.1	mewmbB550
Cla97C05G099760	Watermelon (Charleston Gray)	wcgwmbB326
Cla97C05G099760	Watermelon (97103) v1	wmwmbB091
Cla97C05G099760	Watermelon (97103) v1	wmwmbB270
Cla97C05G099760	Wax gourd	wgowmbB440
Cla97C05G099760	Wax gourd	wgowmbB574