ClCG05G018440 (gene) Watermelon (Charleston Gray)

Overview
NameClCG05G018440
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr05 : 30674928 .. 30676699 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCCATTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGGTCACTATCCCTTTCCAATCTCTTAAGCAAATTCAATCACTCAGTTTTATTCATTCTCTATGGTTTTACCACTAAATCTTCTCTGTATATATCTTCATTTTTGGGACACACAATTTCAAAATTCAACCAAACACTAAGCAACATGAAATCATTTCTTCCTATCTAGTTCTAAATCAAAAGTCTAGTCTCCCCTTTCCTCCTTAAAAGAAAATTATTCAGTGGCTGCCTCATAATAATCTAACATAACCTAATGTTGTTAGAGGTGAATTCAATAATTTGCAACCTCTAGATCCAATAGTGAAAAGAATGTCCACACAGCTCACCCAACTATTTTTCCTTCAAAAGCTCAGAAGATCACCATTATGTGTGTTTTTGTTGGTGCTGAGTTTATCTTCATTTTCTTCTCTTGAAAGACGTGAAAGGAAAAGTAAACTTCGGTAAATTGTCCATCTCAAAAGCTTAATCTTGTGGGTTACTGCAAAAGCTTAATCATACTAATACTAAAACTCTGCCCCAGTTCTAATTTTGTTATTATGCTAAAGAATCATTAGCTCATAAGTTTATGTTAGGATAATTTTAATTATAACAAATGCTTTGATCATAATCAAGCACCAAATAAAGTATGCACGACAAAGTTGAATAATAAGGCCGACAAGGAACAGAAATAAAGTGTGCATTCCAGATAACATGTGTGGGTGTGTATAAACGACAAATTTGCAATATTGAAGATCTAATGTGGAAAAGAAAAGAATAATAGGTGAATGAGGAGTGTTAGGTCAACATGTCTTTTACAATGTCGAATGATGATAAATATACAAATAGAATAAAGTTTAATATCGTGTGAATGGAGGGCCATAACAATGTATGGCTTTTCCACTAACTTTAAATCAAATCATGGTCTAGATCCTGCTACTCCGTACTGAAAGGAGTGATCAAATAATCAACTATGATATTTGTTGGTTTTATTTTAACGGTTATACTTAATAAAAACAAAGTTATCAAAAGATTTAAGTTTTTATTTATTTTAGGGTTAGATATAGCAAAATTTCAAGTTTCTATAGACTATGGTTGTCTCTCATTCATATATAGTAACATTTTGCTAGTAATTTTTTCATTTAAAACAATTATCCTTTATTTTCTAATACATATTGCTTACAAGTAGGATGGACGGTTGCAAAGATTTGGTGTTCTTTAGAAGTGTTTTCTATTATTATAGTTCAAAAACTTGTTCAATAAGCTCTTCCTACTCTTTATACTTTGTATTTAATTAAAGAATTTATACATTAATATTAAAAATATAATTTTAAACTACAGGGGTTGTTTTCTGTATCCAGAGTCTAATTACCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGACAGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAAGCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGGTACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAGCCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGGTTGTCTCCATAGGGACACAAGAAACATTGTTACAAACTTACATGTGCTGA

mRNA sequence

ATGCCCATTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGAGTCTAATTACCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGACAGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAAGCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGGTACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAGCCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGGTTGTCTCCATAGGGACACAAGAAACATTGTTACAAACTTACATGTGCTGA

Coding sequence (CDS)

ATGCCCATTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGAGTCTAATTACCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGACAGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAAGCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGGTACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAGCCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGGTTGTCTCCATAGGGACACAAGAAACATTGTTACAAACTTACATGTGCTGA

Protein sequence

MPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHAGGGTTVIPVYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVMLISIEVSDIKVVSIGTQETLLQTYMC
Homology
[Close]
BLAST of ClCG05G018440 vs. TrEMBL
Match: A0A0A0KUR6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 4.1e-36
Identity = 86/128 (67.19%), Postives = 96/128 (75.00%), Query Frame = 1 

Query: 5   SAAALHQQILPT--ESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGS----- 64
           S+AAL QQI PT  ESNYQ +TY ++HGK G  NQI+RRYS+SAITVS+ IRRGS     
Sbjct: 21  SSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGGG 80

Query: 65  ------AAAGGGENGGGSTPHAGGGTTVIPVYAAGSAQARHRQGRPHNAGNGYDKNMGLL 120
                 AAAGGGENGG S P  GGGT VIPVYAAGSAQA HRQGR HNAGN Y+ NMGLL
Sbjct: 81  GGSGSAAAAGGGENGG-SRPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLL 140

[Close]
BLAST of ClCG05G018440 vs. NCBI nr
Match: gi|659091823|ref|XP_008446752.1| (PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo])

HSP 1 Score: 171.8 bits (434), Expect = 8.9e-40
Identity = 88/120 (73.33%), Postives = 96/120 (80.00%), Query Frame = 1 

Query: 5   SAAALHQQILPT--ESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRR---GSAA 64
           S+AAL QQI PT  ESNYQ +TY  + GK G  NQI RRYS SAITVS+ IRR   G+AA
Sbjct: 20  SSAALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSASAITVSNVIRRANGGAAA 79

Query: 65  AGGGENGGGSTPHAGGGTTVIPVYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVM 120
           AGGGENGGGS PH GGGT VIPVYAAGSAQARHRQGRPHNAGNGY+ N GLL+A VLA +
Sbjct: 80  AGGGENGGGSRPHTGGGTAVIPVYAAGSAQARHRQGRPHNAGNGYENNTGLLVAAVLAAI 139

[Close]
BLAST of ClCG05G018440 vs. NCBI nr
Match: gi|778706307|ref|XP_011655831.1| (PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 5.9e-36
Identity = 86/128 (67.19%), Postives = 96/128 (75.00%), Query Frame = 1 

Query: 5   SAAALHQQILPT--ESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGS----- 64
           S+AAL QQI PT  ESNYQ +TY ++HGK G  NQI+RRYS+SAITVS+ IRRGS     
Sbjct: 21  SSAALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRRYSSSAITVSNVIRRGSGSGGG 80

Query: 65  ------AAAGGGENGGGSTPHAGGGTTVIPVYAAGSAQARHRQGRPHNAGNGYDKNMGLL 120
                 AAAGGGENGG S P  GGGT VIPVYAAGSAQA HRQGR HNAGN Y+ NMGLL
Sbjct: 81  GGSGSAAAAGGGENGG-SRPRTGGGTAVIPVYAAGSAQAHHRQGRAHNAGNSYENNMGLL 140

The following BLAST results are available for this feature:
BLAST of ClCG05G018440 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KUR6_CUCSA4.1e-3667.19Uncharacterized protein OS=Cucumis sativus GN=Csa_5G613600 PE=4 SV=1[more]
BLAST of ClCG05G018440 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659091823|ref|XP_008446752.1|8.9e-4073.33PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo][more]
gi|778706307|ref|XP_011655831.1|5.9e-3667.19PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG05G018440.1ClCG05G018440.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG05G018440Cla020823Watermelon (97103) v1wcgwmB285
ClCG05G018440Cla97C05G099760Watermelon (97103) v2wcgwmbB229
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG05G018440Melon (DHL92) v3.6.1medwcgB278
ClCG05G018440Melon (DHL92) v3.6.1medwcgB325
ClCG05G018440Silver-seed gourdcarwcgB0104
ClCG05G018440Silver-seed gourdcarwcgB0134
ClCG05G018440Silver-seed gourdcarwcgB0920
ClCG05G018440Silver-seed gourdcarwcgB0954
ClCG05G018440Cucumber (Chinese Long) v3cucwcgB150
ClCG05G018440Cucumber (Chinese Long) v3cucwcgB239
ClCG05G018440Watermelon (97103) v2wcgwmbB243
ClCG05G018440Wax gourdwcgwgoB474
ClCG05G018440Watermelon (Charleston Gray)wcgwcgB166
ClCG05G018440Cucumber (Gy14) v1cgywcgB280
ClCG05G018440Cucumber (Gy14) v1cgywcgB585
ClCG05G018440Cucurbita maxima (Rimu)cmawcgB021
ClCG05G018440Cucurbita maxima (Rimu)cmawcgB160
ClCG05G018440Cucurbita maxima (Rimu)cmawcgB411
ClCG05G018440Cucurbita maxima (Rimu)cmawcgB703
ClCG05G018440Cucurbita moschata (Rifu)cmowcgB015
ClCG05G018440Cucurbita moschata (Rifu)cmowcgB149
ClCG05G018440Cucurbita moschata (Rifu)cmowcgB412
ClCG05G018440Cucurbita moschata (Rifu)cmowcgB706
ClCG05G018440Wild cucumber (PI 183967)cpiwcgB144
ClCG05G018440Wild cucumber (PI 183967)cpiwcgB238
ClCG05G018440Cucumber (Chinese Long) v2cuwcgB140
ClCG05G018440Cucumber (Chinese Long) v2cuwcgB231
ClCG05G018440Melon (DHL92) v3.5.1mewcgB287
ClCG05G018440Melon (DHL92) v3.5.1mewcgB331
ClCG05G018440Watermelon (97103) v1wcgwmB273
ClCG05G018440Cucurbita pepo (Zucchini)cpewcgB114
ClCG05G018440Cucurbita pepo (Zucchini)cpewcgB509
ClCG05G018440Cucurbita pepo (Zucchini)cpewcgB700
ClCG05G018440Cucurbita pepo (Zucchini)cpewcgB738
ClCG05G018440Bottle gourd (USVL1VR-Ls)lsiwcgB287
ClCG05G018440Bottle gourd (USVL1VR-Ls)lsiwcgB431
ClCG05G018440Cucumber (Gy14) v2cgybwcgB131
ClCG05G018440Cucumber (Gy14) v2cgybwcgB215