Cla97C05G099760.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C05G099760.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr05 : 28742503 .. 28744325 (+)
Sequence length489
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACAAGAAAAGGGATAACATTGATTTTCTTGCTGTTTTGTTCTACCATGCCCATTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGGTCACTATCCCTTTCCAATCTCTTAAGCAAATTCAATCACTCAGTTTTATTCATTCTCTATGGTTTTACCACTAAATCTTCTCTGTATATATCTTCATTTTTGGGACACACAATTTCAAAATTCAACCAAACACTAAGCAACATGAAATCATTTCTTCCTATCTAGTTCTAAATCAAAAGTCTAGTCTCCCCTTTCCTCCTTAAAAGAAAATTATTCAGTGGCTGCCTCATAATAATCTAACATAACCTAATGTTGTTAGAGGTGAATTCAATAATTTGCAACCTCTAGATCCAATAGTGAAAAGAATGTCCACACAGCTCACCCAACTATTTTTCCTTCAAAAGCTCAGAAGATCACCATTATGTGTGTTTTTGTTGGTGCTGAGTTTATCTTCATTTTCTTCTCTTGAAAGACGTGAAAGGAAAAGTAAACTTCGGTAAATTGTCCATCTCAAAAGCTTAATCTTGTGGGTTACTGCAAAAGCTTAATCATACTAATACTAAAACTCTGCCCCAGTTCTAATTTTGTTATTATGCTAAAGAATCATTAGCTCATAAGTTTATGTTAGGATAATTTTAATTATAACAAATGCTTTGATCATAATCAAGCACCAAATAAAGTATGCACGACAAAGTTGAATAATAAGGCCGACAAGGAACAGAAATAAAGTGTGCATTCCAGATAACATGTGTGGGTGTGTATAAACGACAAATTTGCAATATTGAAGATCTAATGTGGAAAAGAAAAGAATAATAGGTGAATGAGGAGTGTTAGGTCAACATGTCTTTTACAATGTCGAATGATGATAAATATACAAATAGAATAAAGTTTAATATCGTGTGAATGGAGGGCCATAACAATGTATGGCTTTTCCACTAACTTTAAATCAAATCATGGTCTAGATCCTGCTACTCCGTACTGAAAGGAGTGATCAAATAATCAACTATGATATTTGTTGGTTTTATTTTAACGGTTATACTTAATAAAAACAAAGTTATCAAAAGATTTAAGTTTTTATTTATTTTAGGGTTAGATATAGCAAAATTTCAAGTTTCTATAGACTATGGTTGTCTCTCATTCATATATAGTAACATTTTGCTAGTAATTTTTTCATTTAAAACAATTATCCTTTATTTTCTAATACATATTGCTTACAAGTAGGATGGACGGTTGCAAAGATTTGGTGTTCTTTAGAAGTGTTTTCTATTATTATAGTTCAAAAACTTGTTCAATAAGCTCTTCCTACTCTTTATACTTTGTATTTAATTAAAGAATTTATACATTAATATTAAAAATATAATTTTAAACTACAGGGGTTGTTTTCTGTATCCAGAGTCTAATTACCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGACAGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAAGCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGGTACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAGCCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGGTTGTCTCCATAGGGACACAAGAAACATTGTTACAAACTTACATGTGCTGA

mRNA sequence

ATGGGAACAAGAAAAGGGATAACATTGATTTTCTTGCTGTTTTGTTCTACCATGCCCATTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGAGTCTAATTACCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGACAGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAAGCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGGTACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAGCCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGGTTGTCTCCATAGGGACACAAGAAACATTGTTACAAACTTACATGTGCTGA

Coding sequence (CDS)

ATGGGAACAAGAAAAGGGATAACATTGATTTTCTTGCTGTTTTGTTCTACCATGCCCATTTCATCTGCTGCTGCTCTCCATCAACAAATCCTCCCAACAGAGTCTAATTACCAACACAGAACTTACCTAGAAAGACATGGCAAAGATGGGGCTGCTAACCAGATTGACAGAAGATACAGTACAAGTGCAATCACCGTTTCTGATGGGATTCGTCGTGGAAGCGCAGCCGCCGGGGGTGGAGAAAATGGTGGTGGCAGTACACCTCATGCAGGAGGAGGTACAACCGTAATCCCTGTTTATGCAGCTGGTTCGGCACAAGCACGTCACCGCCAAGGTCGACCACATAATGCCGGAAATGGCTATGACAAAAACATGGGGCTTCTGATAGCCACAGTTTTGGCCGTCATGCTCATCTCTATAGAGGTTTCTGATATCAAGGTTGTCTCCATAGGGACACAAGAAACATTGTTACAAACTTACATGTGCTGA

Protein sequence

MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYSTSAITVSDGIRRGSAAAGGGENGGGSTPHAGGGTTVIPVYAAGSAQARHRQGRPHNAGNGYDKNMGLLIATVLAVMLISIEVSDIKVVSIGTQETLLQTYMC
Homology
[Close]
BLAST of Cla97C05G099760.1 vs. NCBI nr
Match: XP_008446752.1 (PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo])

HSP 1 Score: 128.3 bits (321), Expect = 2.4e-26
Identity = 101/138 (73.19%), Postives = 109/138 (78.99%), Query Frame = 0 

Query: 4   RKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYST 63
           R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY  + GK G  NQI RRYS 
Sbjct: 3   RRGIRLIFLLFCSTLAISS-AALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSA 62

Query: 64  SAITVSD---GIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQARHRQGRPHNAG 123
           SAITVS+      XXXXXXXXXXXXXXXXXXXXXXXX   VYAAGSAQARHRQGRPHNAG
Sbjct: 63  SAITVSNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPVYAAGSAQARHRQGRPHNAG 122

Query: 124 NGYDKNMGLLIATVLAVM 137
           NGY+ N GLL+A VLA +
Sbjct: 123 NGYENNTGLLVAAVLAAI 139

[Close]
BLAST of Cla97C05G099760.1 vs. NCBI nr
Match: XP_011655831.1 (PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus] >KGN52182.1 hypothetical protein Csa_5G613600 [Cucumis sativus])

HSP 1 Score: 125.9 bits (315), Expect = 1.2e-25
Identity = 104/148 (70.27%), Postives = 114/148 (77.03%), Query Frame = 0 

Query: 1   MGTRKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRR 60
           MG R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY ++HGK G  NQI+RR
Sbjct: 1   MGRRRGIRLIFLLFCSTLAISS-AALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRR 60

Query: 61  YSTSAITV----------SDGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQAR 120
           YS+SAITV               XXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQA 
Sbjct: 61  YSSSAITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQAH 120

Query: 121 HRQGRPHNAGNGYDKNMGLLIATVLAVM 137
           HRQGR HNAGN Y+ NMGLL+A VLA +
Sbjct: 121 HRQGRAHNAGNSYENNMGLLVAAVLAAI 147

[Close]
BLAST of Cla97C05G099760.1 vs. NCBI nr
Match: XP_022957462.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata])

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 86/137 (62.77%), Postives = 99/137 (72.26%), Query Frame = 0 

Query: 1   MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYS 60
           MG R+ +TL+FLLFCST+P  S +AL QQILPTESNY  +T  E+HGKDG  N+I   YS
Sbjct: 1   MGRRRELTLMFLLFCSTIPAIS-SALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYS 60

Query: 61  TSAITVSDGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQARHRQGRPHNAGNG 120
             AITVS GI    XXXXXXXXXXXXXXXXXXXXXXXX           RQGR  NAGN 
Sbjct: 61  ARAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNH 120

Query: 121 YDKNMGLLIATVLAVML 138
           Y+ NMGLL+A+VLA ++
Sbjct: 121 YENNMGLLVASVLAAIV 136

[Close]
BLAST of Cla97C05G099760.1 vs. NCBI nr
Match: XP_022987717.1 (uncharacterized protein LOC111485159 [Cucurbita maxima])

HSP 1 Score: 105.1 bits (261), Expect = 2.2e-19
Identity = 84/136 (61.76%), Postives = 98/136 (72.06%), Query Frame = 0 

Query: 1   MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYS 60
           MG R+ ++L+FLLFCST+P  S+A   QQILPTE NY  +T  E+HG+DG  N+I   YS
Sbjct: 1   MGRRRELSLMFLLFCSTIPAISSAR-QQQILPTEPNYHQKTNAEKHGQDGVTNRISSIYS 60

Query: 61  TSAITVSDGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQARHRQGRPHNAGNG 120
             AITVS GI    XXXXXXXXXXXXXXXXXXXXXXXX          HRQGRP NAGN 
Sbjct: 61  ARAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHHRQGRPRNAGNH 120

Query: 121 YDKNMGLLIATVLAVM 137
           Y+ NMGLL+A+VLA +
Sbjct: 121 YENNMGLLVASVLAAI 135

[Close]
BLAST of Cla97C05G099760.1 vs. NCBI nr
Match: XP_023517064.1 (glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 104.8 bits (260), Expect = 2.9e-19
Identity = 86/136 (63.24%), Postives = 98/136 (72.06%), Query Frame = 0 

Query: 1   MGTRKGITLIFLLFCSTMPISSAAALHQQILPTESNYQHRTYLERHGKDGAANQIDRRYS 60
           MG R+ +TL+FLLFCST+P  S +AL QQILPTESNY  +T  E+HGKDG  N+I   YS
Sbjct: 1   MGRRRELTLMFLLFCSTIPAIS-SALQQQILPTESNYHQKTNAEKHGKDGVTNRISSIYS 60

Query: 61  TSAITVSDGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQARHRQGRPHNAGNG 120
             AITVS GI    XXXXXXXXXXXXXXXXXXXXXXXX           RQGR  NAGN 
Sbjct: 61  ARAITVSQGIGHGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQGRTRNAGNH 120

Query: 121 YDKNMGLLIATVLAVM 137
           Y+ NMGLL+A+VLA +
Sbjct: 121 YENNMGLLVASVLAAI 135

[Close]
BLAST of Cla97C05G099760.1 vs. TrEMBL
Match: tr|A0A1S3BFU8|A0A1S3BFU8_CUCME (uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 1.6e-26
Identity = 101/138 (73.19%), Postives = 109/138 (78.99%), Query Frame = 0 

Query: 4   RKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRRYST 63
           R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY  + GK G  NQI RRYS 
Sbjct: 3   RRGIRLIFLLFCSTLAISS-AALQQQIFPTATESNYQQKTYTRKQGKYGVTNQISRRYSA 62

Query: 64  SAITVSD---GIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQARHRQGRPHNAG 123
           SAITVS+      XXXXXXXXXXXXXXXXXXXXXXXX   VYAAGSAQARHRQGRPHNAG
Sbjct: 63  SAITVSNVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVIPVYAAGSAQARHRQGRPHNAG 122

Query: 124 NGYDKNMGLLIATVLAVM 137
           NGY+ N GLL+A VLA +
Sbjct: 123 NGYENNTGLLVAAVLAAI 139

[Close]
BLAST of Cla97C05G099760.1 vs. TrEMBL
Match: tr|A0A0A0KUR6|A0A0A0KUR6_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 8.0e-26
Identity = 104/148 (70.27%), Postives = 114/148 (77.03%), Query Frame = 0 

Query: 1   MGTRKGITLIFLLFCSTMPISSAAALHQQILP--TESNYQHRTYLERHGKDGAANQIDRR 60
           MG R+GI LIFLLFCST+ ISS AAL QQI P  TESNYQ +TY ++HGK G  NQI+RR
Sbjct: 1   MGRRRGIRLIFLLFCSTLAISS-AALQQQIFPTATESNYQQKTYTKKHGKYGVTNQINRR 60

Query: 61  YSTSAITV----------SDGIRXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQAR 120
           YS+SAITV               XXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQA 
Sbjct: 61  YSSSAITVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVYAAGSAQAH 120

Query: 121 HRQGRPHNAGNGYDKNMGLLIATVLAVM 137
           HRQGR HNAGN Y+ NMGLL+A VLA +
Sbjct: 121 HRQGRAHNAGNSYENNMGLLVAAVLAAI 147

The following BLAST results are available for this feature:
BLAST of Cla97C05G099760.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008446752.12.4e-2673.19PREDICTED: uncharacterized protein LOC103489382 [Cucumis melo][more]
XP_011655831.11.2e-2570.27PREDICTED: uncharacterized protein LOC101203448 [Cucumis sativus] >KGN52182.1 hy... [more]
XP_022957462.12.2e-1962.77glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata][more]
XP_022987717.12.2e-1961.76uncharacterized protein LOC111485159 [Cucurbita maxima][more]
XP_023517064.12.9e-1963.24glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo][more]
BLAST of Cla97C05G099760.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3BFU8|A0A1S3BFU8_CUCME1.6e-2673.19uncharacterized protein LOC103489382 OS=Cucumis melo OX=3656 GN=LOC103489382 PE=... [more]
tr|A0A0A0KUR6|A0A0A0KUR6_CUCSA8.0e-2670.27Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G613600 PE=4 SV=1[more]
BLAST of Cla97C05G099760.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C05G099760.1 vs. TAIR10
Match NameE-valueIdentityDescription
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C05G099760Cla97C05G099760gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C05G099760.1.exon.1Cla97C05G099760.1.exon.1exon
Cla97C05G099760.1.exon.2Cla97C05G099760.1.exon.2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C05G099760.1.CDS.1Cla97C05G099760.1.CDS.1CDS
Cla97C05G099760.1.CDS.2Cla97C05G099760.1.CDS.2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C05G099760.1Cla97C05G099760.1-proteinpolypeptide


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..91
NoneNo IPR availablePANTHERPTHR36245FAMILY NOT NAMEDcoord: 1..137