Cla97C05G085030 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G085030
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Splicing factor 3B subunit 5/RDS3 complex subunit 10
Location	Cla97Chr05 : 3773028 .. 3774945 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTGCGCTCTAAGAACATAAATCTCTTGTTTTCCGTATCATCTACTCCTGTATTGCCAAATTTTTTTTTTTTTTTTTTTTTTAAATTCATTTCAGCTGTAATTCCAAAACCCTACAACTCATTGCAATCTCATTTCTGAAGATGCTAATTTATACATTTCTTCGTACTTGCATTCCCATTCCATTTAGTTGATAAGACGTTTTTCTTTGTTCTGAATTTTGATATTTCTGATATCGTGGAAGATTAGGAATTTGAGTAATTCCATTTACCGTTTATTCATACATTTGGTTAGTGTTTAAGGTTATTTATTTTTACTTGCCATATGAATCCGAGTTATGCTTGAAAATCAGCTCTGCTTGAAGTGAACAATCAAGAACGGGGAATACATACATGCCAAGTCCATTGATTCCTAGGAAAGGTTACCATTTTGAGTCCCTAGTTTATTTAAGTTATTTTCCTTATTTTATTCAGATGGTTTTTAGTGTGGGTGATAACTAGTGTTTTTTAAAGCTGAAGGCACAATAGTCTTCTGCAATTTAAGCTCAATGTCTAAAGTTTTTTTTAGAAAGGAGAAAGCAAGTGGGAATATGAAAAAAAAAAACGAAAACACAGGAAATTTTGCAATTAGGCTTAATAAATTTTATTTGTGGTTCATAAAGAAGGAAAGCCCTAATTATTGGTAACTTTTTTAAAATAACGAAAAATCCCTAAGGCCAAGTCGCGATTGTGTACCAAGCCGTTTCAAGGCGAGGTGCCAGACTTGCTCTACAGACTAGGCACGCGCTTGGATGGGCTTTTTAAAATACAGTGATAACCTGTAATCCATTTTTTGAATCTAAGATCTGATCATGGCCTCCTGTCTTTACTTGAGATTGTCTCAGTGGGCGCTAATATTGGTTTTGGATATTCAATACAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCCAAATATGTGGGAACTGGGCATGCCGATTTAAATAGATTGTAAGTTTCCTTATTCCTTTAAAGCCTTCATCTTATATTGCTATGCATAGTAGTTTGTAAACCTCAGTCCACATCTCTGTGTGTACAGCGAATGGACCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGGTTGATACTTTGCTTTATCTTTTTGTTTTTATTTGTCTTTTCCCCGGCAAGTTTCCTCTTCTTAGCATTAGTACCCCTCCCCCCTATATTTTTTGTTGTTTGAAGAACCATTTCAGATGTGGCTAGTATATGTTGTTATCGTTGTTATAGCTTTGAAATCTATGTTTGTTATTTTTGGATAATACCCTCCCCCCCCCCCCCCACAAAAAAAAAAAAAAAAAAAAACAGAGAGAGAGGGACAGATTGAAGATGGGTATTATCAATGGGCAATTTTTCTCTTCTTTTCTTTTTTTAAGCCAACAATTGCTGAGGTTTCTGCATACATTCATCACTACTTTCACTTGTCCTATTATTACTTATTAGGTGAATTGTTCCTTTCAATTTTTCAATTTTTTGTTTTCAGTGTGGCCTTTTATCTTCACTTGAACTGTAGCCCCAAGTAATTTCATTCTTCACAACATGAAGTGTCAAGAATAAATTGGTCCTACCACTTTTGAAATGTGGGGTTGTGCCCATCATGTAACTAAACGTCTTTCATAATGAGTGATAGAAAATTTCCTCATAGTTTCTCCTGGAAATCATTTACAGCTTAATTAGATAAAGAAAGGTAATTTTTAACACTCGTTTTTTGTTTTTTTGTTCTTTTTGTAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

mRNA sequence

ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCCAAATATGTGGGAACTGGGCATGCCGATTTAAATAGATTCGAATGGACCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Coding sequence (CDS)

ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCCAAATATGTGGGAACTGGGCATGCCGATTTAAATAGATTCGAATGGACCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Protein sequence

MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Homology

[Close]

BLAST of Cla97C05G085030 vs. NCBI nr
Match: XP_006489711.1 (uncharacterized protein At4g14342 [Citrus sinensis] >XP_006489712.1 uncharacterized protein At4g14342 [Citrus sinensis] >XP_008438507.1 PREDICTED: uncharacterized protein At4g14342-like isoform X1 [Cucumis melo] >XP_008438508.1 PREDICTED: uncharacterized protein At4g14342-like isoform X2 [Cucumis melo] >XP_011650926.1 PREDICTED: uncharacterized protein At4g14342-like isoform X1 [Cucumis sativus] >XP_011650927.1 PREDICTED: uncharacterized protein At4g14342-like isoform X2 [Cucumis sativus] >XP_018812282.1 PREDICTED: uncharacterized protein At4g14342 [Juglans regia] >KGN56849.1 hypothetical protein Csa_3G134970 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 4.1e-44
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030 vs. NCBI nr
Match: ESR33493.1 (hypothetical protein CICLE_v10006856mg [Citrus clementina])

HSP 1 Score: 185.3 bits (469), Expect = 9.0e-44
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
           MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYF+IAEN
Sbjct: 104 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAEN 163

Query: 61  ESIGREHYNFMQKMLLPCGLPPEREDD 88
           ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 164 ESIGREHYNFMQKMLLPCGLPPEREDD 190

[Close]

BLAST of Cla97C05G085030 vs. NCBI nr
Match: GAY60739.1 (hypothetical protein CUMW_204370 [Citrus unshiu])

HSP 1 Score: 185.3 bits (469), Expect = 9.0e-44
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
           MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYF+IAEN
Sbjct: 104 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAEN 163

Query: 61  ESIGREHYNFMQKMLLPCGLPPEREDD 88
           ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 164 ESIGREHYNFMQKMLLPCGLPPEREDD 190

[Close]

BLAST of Cla97C05G085030 vs. NCBI nr
Match: XP_024045677.1 (uncharacterized protein At4g14342 [Citrus clementina] >XP_024045682.1 uncharacterized protein At4g14342 [Citrus clementina])

HSP 1 Score: 185.3 bits (469), Expect = 9.0e-44
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYF+IAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030 vs. NCBI nr
Match: XP_006428364.1 (uncharacterized protein At4g14342 [Citrus clementina] >XP_024038189.1 uncharacterized protein At4g14342 [Citrus clementina] >XP_024948508.1 uncharacterized protein At4g14342 [Citrus sinensis] >XP_024948509.1 uncharacterized protein At4g14342 [Citrus sinensis] >ESR41603.1 hypothetical protein CICLE_v10013219mg [Citrus clementina] >ESR41604.1 hypothetical protein CICLE_v10013219mg [Citrus clementina] >KDO49993.1 hypothetical protein CISIN_1g047539mg [Citrus sinensis] >GAY59853.1 hypothetical protein CUMW_197660 [Citrus unshiu] >GAY59854.1 hypothetical protein CUMW_197660 [Citrus unshiu])

HSP 1 Score: 184.9 bits (468), Expect = 1.2e-43
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASY+GHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030 vs. TrEMBL
Match: tr|A0A1S3AX72|A0A1S3AX72_CUCME (Splicing factor subunit OS=Cucumis melo OX=3656 GN=LOC103483584 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030 vs. TrEMBL
Match: tr|A0A2I4DYR2|A0A2I4DYR2_9ROSI (Splicing factor subunit OS=Juglans regia OX=51240 GN=LOC108984696 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030 vs. TrEMBL
Match: tr|A0A0A0L732|A0A0A0L732_CUCSA (Splicing factor subunit OS=Cucumis sativus OX=3659 GN=Csa_3G134970 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030 vs. TrEMBL
Match: tr|V4RHN1|V4RHN1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006856mg PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.0e-44
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
           MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYF+IAEN
Sbjct: 104 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAEN 163

Query: 61  ESIGREHYNFMQKMLLPCGLPPEREDD 88
           ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 164 ESIGREHYNFMQKMLLPCGLPPEREDD 190

[Close]

BLAST of Cla97C05G085030 vs. TrEMBL
Match: tr|A0A2H5Q7X7|A0A2H5Q7X7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_204370 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.0e-44
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
           MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYF+IAEN
Sbjct: 104 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAEN 163

Query: 61  ESIGREHYNFMQKMLLPCGLPPEREDD 88
           ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 164 ESIGREHYNFMQKMLLPCGLPPEREDD 190

[Close]

BLAST of Cla97C05G085030 vs. Swiss-Prot
Match: sp|Q9LW64|SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-44
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWTVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGRE YNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of Cla97C05G085030 vs. Swiss-Prot
Match: sp|P58728|SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-43
Identity = 79/87 (90.80%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGRE YNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]

BLAST of Cla97C05G085030 vs. Swiss-Prot
Match: sp|Q9VHI4|SF3B5_DROME (Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.1e-28
Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 5  DRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAENESIG 64
          +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  
Sbjct: 3  ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 65 REHYNFMQKMLLPCGLPPEREDD 88
          R  +N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85

[Close]

BLAST of Cla97C05G085030 vs. Swiss-Prot
Match: sp|Q56K13|SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-26
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GREHYNFMQKMLLPCGLPPEREDD 88
           R  +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]

BLAST of Cla97C05G085030 vs. Swiss-Prot
Match: sp|Q9BWJ5|SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-26
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GREHYNFMQKMLLPCGLPPEREDD 88
           R  +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]

BLAST of Cla97C05G085030 vs. TAIR10
Match: AT3G23325.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-45
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWTVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGRE YNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of Cla97C05G085030 vs. TAIR10
Match: AT4G14342.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)

HSP 1 Score: 175.6 bits (444), Expect = 1.3e-44
Identity = 79/87 (90.80%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGRE YNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

The following BLAST results are available for this feature:

BLAST of Cla97C05G085030 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_006489711.1	4.1e-44	98.85	uncharacterized protein At4g14342 [Citrus sinensis] >XP_006489712.1 uncharacteri...	[more]
ESR33493.1	9.0e-44	97.70	hypothetical protein CICLE_v10006856mg [Citrus clementina]	[more]
GAY60739.1	9.0e-44	97.70	hypothetical protein CUMW_204370 [Citrus unshiu]	[more]
XP_024045677.1	9.0e-44	97.70	uncharacterized protein At4g14342 [Citrus clementina] >XP_024045682.1 uncharacte...	[more]
XP_006428364.1	1.2e-43	96.55	uncharacterized protein At4g14342 [Citrus clementina] >XP_024038189.1 uncharacte...	[more]

BLAST of Cla97C05G085030 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AX72\|A0A1S3AX72_CUCME	2.7e-44	98.85	Splicing factor subunit OS=Cucumis melo OX=3656 GN=LOC103483584 PE=3 SV=1	[more]
tr\|A0A2I4DYR2\|A0A2I4DYR2_9ROSI	2.7e-44	98.85	Splicing factor subunit OS=Juglans regia OX=51240 GN=LOC108984696 PE=3 SV=1	[more]
tr\|A0A0A0L732\|A0A0A0L732_CUCSA	2.7e-44	98.85	Splicing factor subunit OS=Cucumis sativus OX=3659 GN=Csa_3G134970 PE=3 SV=1	[more]
tr\|V4RHN1\|V4RHN1_9ROSI	6.0e-44	97.70	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006856mg PE=4 ...	[more]
tr\|A0A2H5Q7X7\|A0A2H5Q7X7_CITUN	6.0e-44	97.70	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_204370 PE=4 SV=1	[more]

BLAST of Cla97C05G085030 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LW64\|SF3BA_ARATH	2.1e-44	93.10	Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 P...	[more]
sp\|P58728\|SF3BB_ARATH	2.3e-43	90.80	Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 P...	[more]
sp\|Q9VHI4\|SF3B5_DROME	8.1e-28	65.06	Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV...	[more]
sp\|Q56K13\|SF3B5_BOVIN	3.4e-26	59.52	Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1	[more]
sp\|Q9BWJ5\|SF3B5_HUMAN	3.4e-26	59.52	Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1	[more]

BLAST of Cla97C05G085030 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23325.1	1.2e-45	93.10	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]
AT4G14342.1	1.3e-44	90.80	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **INTERPRO**
Term	Definition
IPR017089	Splicing_factor_3B_subunit_5
IPR009846	SF3b5/RDS3-10

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0071011	precatalytic spliceosome
cellular_component	GO:0005689	U12-type spliceosomal complex
cellular_component	GO:0005686	U2 snRNP
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C05G085030.1	Cla97C05G085030.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PFAM	PF07189	SF3b10	coord: 5..82 e-value: 1.2E-36 score: 124.5
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PANTHER	PTHR20978	FAMILY NOT NAMED	coord: 4..86
IPR017089	Splicing factor 3B, subunit 5	PIRSF	PIRSF037010	SF3B5	coord: 1..87 e-value: 9.0E-39 score: 129.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C05G085030	Cla021515	Watermelon (97103) v1	wmwmbB206
Cla97C05G085030	Csa3G134970	Cucumber (Chinese Long) v2	cuwmbB204
Cla97C05G085030	MELO3C006416	Melon (DHL92) v3.5.1	mewmbB434
Cla97C05G085030	ClCG05G004290	Watermelon (Charleston Gray)	wcgwmbB229
Cla97C05G085030	CSPI03G11870	Wild cucumber (PI 183967)	cpiwmbB209
Cla97C05G085030	Cucsa.255470	Cucumber (Gy14) v1	cgywmbB452
Cla97C05G085030	CmaCh06G013180	Cucurbita maxima (Rimu)	cmawmbB856
Cla97C05G085030	CmaCh14G018150	Cucurbita maxima (Rimu)	cmawmbB263
Cla97C05G085030	CmoCh14G018540	Cucurbita moschata (Rifu)	cmowmbB243
Cla97C05G085030	CmoCh06G013270	Cucurbita moschata (Rifu)	cmowmbB833
Cla97C05G085030	Lsi05G017370	Bottle gourd (USVL1VR-Ls)	lsiwmbB333
Cla97C05G085030	CsGy3G012000	Cucumber (Gy14) v2	cgybwmbB196
Cla97C05G085030	MELO3C006416.2	Melon (DHL92) v3.6.1	medwmbB423
Cla97C05G085030	Carg06222	Silver-seed gourd	carwmbB1008
Cla97C05G085030	CsaV3_3G012020	Cucumber (Chinese Long) v3	cucwmbB206
Cla97C05G085030	Bhi01G000518	Wax gourd	wgowmbB183

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C05G085030	Watermelon (97103) v2	wmbwmbB137
Cla97C05G085030	Watermelon (97103) v2	wmbwmbB141
Cla97C05G085030	Silver-seed gourd	carwmbB0229
Cla97C05G085030	Silver-seed gourd	carwmbB0236
Cla97C05G085030	Silver-seed gourd	carwmbB0786
Cla97C05G085030	Silver-seed gourd	carwmbB0817
Cla97C05G085030	Silver-seed gourd	carwmbB1131
Cla97C05G085030	Cucumber (Gy14) v2	cgybwmbB124
Cla97C05G085030	Cucumber (Gy14) v1	cgywmbB657
Cla97C05G085030	Cucurbita maxima (Rimu)	cmawmbB366
Cla97C05G085030	Cucurbita maxima (Rimu)	cmawmbB538
Cla97C05G085030	Cucurbita maxima (Rimu)	cmawmbB648
Cla97C05G085030	Cucurbita maxima (Rimu)	cmawmbB914
Cla97C05G085030	Cucurbita moschata (Rifu)	cmowmbB350
Cla97C05G085030	Cucurbita moschata (Rifu)	cmowmbB517
Cla97C05G085030	Cucurbita moschata (Rifu)	cmowmbB622
Cla97C05G085030	Cucurbita moschata (Rifu)	cmowmbB886
Cla97C05G085030	Wild cucumber (PI 183967)	cpiwmbB133
Cla97C05G085030	Wild cucumber (PI 183967)	cpiwmbB218
Cla97C05G085030	Cucumber (Chinese Long) v3	cucwmbB134
Cla97C05G085030	Cucumber (Chinese Long) v3	cucwmbB215
Cla97C05G085030	Cucumber (Chinese Long) v2	cuwmbB131
Cla97C05G085030	Cucumber (Chinese Long) v2	cuwmbB211
Cla97C05G085030	Bottle gourd (USVL1VR-Ls)	lsiwmbB015
Cla97C05G085030	Bottle gourd (USVL1VR-Ls)	lsiwmbB335
Cla97C05G085030	Melon (DHL92) v3.6.1	medwmbB323
Cla97C05G085030	Melon (DHL92) v3.6.1	medwmbB374
Cla97C05G085030	Melon (DHL92) v3.5.1	mewmbB335
Cla97C05G085030	Melon (DHL92) v3.5.1	mewmbB384
Cla97C05G085030	Watermelon (Charleston Gray)	wcgwmbB269
Cla97C05G085030	Watermelon (Charleston Gray)	wcgwmbB304
Cla97C05G085030	Watermelon (97103) v1	wmwmbB161
Cla97C05G085030	Watermelon (97103) v1	wmwmbB402
Cla97C05G085030	Wax gourd	wgowmbB072
Cla97C05G085030	Wax gourd	wgowmbB257