Carg06222 (gene) Silver-seed gourd

Overview
NameCarg06222
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSplicing factor 3B, subunit 5
LocationCucurbita_argyrosperma_scaffold_016 : 354622 .. 357299 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAAAACAATATATTTTTAGGGGAAAAAAAAATCGTTTATTTGGACTGCGCCAGGGCCAGATCTTTAACTCGCGCCTTTTCTCTGCTTCGTCGTTTCTGTCGAATCTCCCCCGAATCGAACATGCAGGTGAGCACTGCTAATATAGTTCTCTTATTCTTATGTGTTCTTCGCTCATGTATTCTCGAATTTGGTTTGTTTTTGTTTTGTTTTGTTTTTTTTTTTTTTCATTCATTACAGCAGTAATTCCAAAACCCTAGAACTGATTAGTTGATCGGAGGTTTTTTTTTTGTGATATTTCTGATATCGTGGGAGATAAGGAATTTGATACCGTTGCTTCGCGGAATTACTGCCTCCATTTAGCTTTATTTTTCAATTCATTTAGCGTTTATGTTTATTTACTTCTAGTTGTCGTATGAATCTGGGTTGATGCATTTGTGAAAATTAGCTCTGCTTAAAATGAACTATCAAGAACGGGAAATATCATATGTATGTATTTTTAGGAAACAATTTCATTGATGTATGAAATTTACCGAAAGGAAGCAGTCCACATCCGAGTTAGTGACAAGAAACATTTCTAATTGGATAAAAGGGTAATTTTAGAATTGAAATAGTGAAGATAATTTACATCGATAAGCATGCTCTTTTCCACTGAAATCCCTTTGATTCCTTTCATTCCAAGGAAAGGATACCGTATTGGGGCCATTTGTTTATTTATTTTCCCATTTTGTTCGGATGTTATTAGTGTCATATGTGGAAATCAAACCTCTGAATCAGTAATCCGTATTTGAAATCTAAGGTCTGATCATGGCTTACTGTCTTTGCTTGAGGTTTCCTCAGATGGAGCTAATGTTGGTTTCTGATCTTCAATGCAGGCCAGTGATAGATTCAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCATGCTGACTTAAATAGATTGTTAGTTTTCCTATTCCTTTGGAGCTTTGATCTTATATTACTTCGCATAGTAGTTTGTAATCCTCATTTCATATCTCTTTGTGTACAGTGAATGGGCTGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTATCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACGCTACAACTTTATGCAGGTTGGTACATTGCCTTTACTTGTGTTTATTTGTCTTTTCCCTGTCACGCATTCTCTTCATAGCATTAACCCCCCACCCAAAAGAAAAAAGTCAGAATTGGAAAAGAACTAAGAGAAAAAAAGAGAGAAAAAGATGGGCTCCAATCCATTTTGTTAAACCTTTCCTATAACGTTCACTCCTTCCCCAAGCCTCCAATAAATTTTATTATCAGTAGGCAGTTTTGATTTTCTTTTCTTTTTTAGTGCCAACCATTTCTGAGGTTTCTGGATACATTCATTATAATTGTTCAATATTACCTTCATGTGTCCACCACCCTTATAATGTGCTTTCTGAGTTTCAAGTCATTGTAATATGATTACTGGGTGACTTGTTGCTTTCAACTTTTCAATTTTTAGTATTCAATCTGGTTTGTTTGTCTTCACTTAAACAATAGTGCAAGTATTTCATTCTGCATGCTTTTAGTTATCAATAATAAATTGGACATACCAAATTTGATATGCGGGGTTGTGCCAACCATGTAACTAACTTTCTTTCTTAATGAGGAATAGCAAATTTGACTTTACACGCTATGAGTTGCCAATAACGATTCTTCATACCAACTTTGAAGTTTAGGGTGGAGCCAATCATGTTACTGACTTTCTGTCTTAATGAGGGATGGAAAATTTCATCATCTCTGCCCCTTGATTTCATTTACAACTTAATTAGATACAGAATGGTAACTATTAACATTACTTTTTTGTTTTTTGTTTTTGTTTCTTTGCAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAAATCGTATTAGGTTGTGACAAGAGATTTTAGTACTCTGGATCTTCGTGGGGTTAACGAACTTATCCTTTCGTGAGCTAACTCTGTGTCTGTTCAGAAGCAATGAATGGGAAATATGAACTATTTTCTCTTGTAATGCTCTTGCTTGATTAAGAATCAGTTTCCAACTAATCTACAAGACTGCACTGTACCTTGTTGTTCTCCCTTTTATTTCAAGAAAAAGTTCTATCTCAATCATAGTTTGTGGAACGTTCCCATCTTTAGATGTATAATTTGGCTTAATCAATGAATTGATTGTTTCCTTGACAAGACCATGAATTTAATTTGACAGCTATTGATGCTGGATTTGGTCCATTCAGTTTGTAACTATTATCAGTCGGTTACTCAGTTTCAGGAGTTATTGTGTACCTACTGAGACTACTTGTTACAGGACCACATCAAAACTATGTGATACGTCGCATGCTAATTAATACAGGTGGATGTTTATTAGGTGCTTGACTTGATAATGTTTCTTGTTCAGCATGGTTAGAATGAAAGGAGGACCTTCTTGGAACTGCCTCCAACTTAACTTTGGGGAAGATTTTGGGTTGGCTGGAGGGTGCCTCTCCTAATCCCAGACTCTTGCCAATCAGTTCTCTGGTGTGATTATACAAAGTGGAAAGCAGGTCCAACTGAAGGAAGAGTCGATGAGGGGACAT

mRNA sequence

AAAAAACAATATATTTTTAGGGGAAAAAAAAATCGTTTATTTGGACTGCGCCAGGGCCAGATCTTTAACTCGCGCCTTTTCTCTGCTTCGTCGTTTCTGTCGAATCTCCCCCGAATCGAACATGCAGGCCAGTGATAGATTCAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCATGCTGACTTAAATAGATTTGAATGGGCTGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTATCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACGCTACAACTTTATGCAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGAAATCGTATTAGGTTGTGACAAGAGATTTTAGTACTCTGGATCTTCGTGGGGTTAACGAACTTATCCTTTCGTGAGCTAACTCTGTGTCTGTTCAGAAGCAATGAATGGGAAATATGAACTATTTTCTCTTGTAATGCTCTTGCTTGATTAAGAATCAGTTTCCAACTAATCTACAAGACTGCACTGTACCTTGTTGTTCTCCCTTTTATTTCAAGAAAAAGTTCTATCTCAATCATAGTTTGTGGAACGTTCCCATCTTTAGATGTATAATTTGGCTTAATCAATGAATTGATTGTTTCCTTGACAAGACCATGAATTTAATTTGACAGCTATTGATGCTGGATTTGGTCCATTCAGTTTGTAACTATTATCAGTCGGTTACTCAGTTTCAGGAGTTATTGTGTACCTACTGAGACTACTTGTTACAGGACCACATCAAAACTATGTGATACGTCGCATGCTAATTAATACAGGTGGATGTTTATTAGGTGCTTGACTTGATAATGTTTCTTGTTCAGCATGGTTAGAATGAAAGGAGGACCTTCTTGGAACTGCCTCCAACTTAACTTTGGGGAAGATTTTGGGTTGGCTGGAGGGTGCCTCTCCTAATCCCAGACTCTTGCCAATCAGTTCTCTGGTGTGATTATACAAAGTGGAAAGCAGGTCCAACTGAAGGAAGAGTCGATGAGGGGACAT

Coding sequence (CDS)

ATGCAGGCCAGTGATAGATTCAACATCAATTCCCAGCTTGAGCACCTTCAGGCTAAATATGTGGGAACTGGGCATGCTGACTTAAATAGATTTGAATGGGCTGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTATCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACGCTACAACTTTATGCAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Protein sequence

MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIGRERYNFMQKMLLPCGLPPEREDD
Homology
[Close]
BLAST of Carg06222 vs. NCBI nr
Match: XP_015887858.1 (uncharacterized protein At4g14342 [Ziziphus jujuba] >XP_022947444.1 uncharacterized protein At4g14342 isoform X1 [Cucurbita moschata] >XP_022947450.1 uncharacterized protein At4g14342 isoform X2 [Cucurbita moschata] >XP_022925775.1 uncharacterized protein At4g14342 [Cucurbita moschata] >XP_022978791.1 uncharacterized protein At4g14342 [Cucurbita maxima] >XP_022974505.1 uncharacterized protein At4g14342 isoform X1 [Cucurbita maxima] >XP_022974506.1 uncharacterized protein At4g14342 isoform X2 [Cucurbita maxima] >XP_023521267.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023539132.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023543147.1 uncharacterized protein At4g14342 [Cucurbita pepo subsp. pepo] >XP_023919041.1 uncharacterized protein At4g14342 [Quercus suber] >XP_023919042.1 uncharacterized protein At4g14342 [Quercus suber] >OWM63373.1 hypothetical protein CDL15_Pgr022118 [Punica granatum] >PKI70636.1 hypothetical protein CRG98_008869 [Punica granatum] >POF02078.1 uncharacterized protein CFP56_65328 [Quercus suber])

HSP 1 Score: 186.8 bits (473), Expect = 3.1e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of Carg06222 vs. NCBI nr
Match: XP_004134645.1 (PREDICTED: uncharacterized protein At4g14342 [Cucumis sativus] >XP_008439709.1 PREDICTED: uncharacterized protein At4g14342 isoform X1 [Cucumis melo] >ADN34023.1 splicing factor 3b subunit [Cucumis melo subsp. melo] >KGN49334.1 hypothetical protein Csa_6G520320 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 4.1e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of Carg06222 vs. NCBI nr
Match: XP_021593515.1 (uncharacterized protein At4g14342 [Manihot esculenta] >XP_021640388.1 uncharacterized protein At4g14342 isoform X1 [Hevea brasiliensis] >XP_021640396.1 uncharacterized protein At4g14342 isoform X2 [Hevea brasiliensis])

HSP 1 Score: 186.4 bits (472), Expect = 4.1e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASY+GHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of Carg06222 vs. NCBI nr
Match: CBI23659.3 (unnamed protein product, partial [Vitis vinifera] >PON94782.1 Splicing factor 3B, subunit [Trema orientalis])

HSP 1 Score: 186.0 bits (471), Expect = 5.3e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPLLAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of Carg06222 vs. NCBI nr
Match: XP_010671013.1 (PREDICTED: uncharacterized protein At4g14342 [Beta vulgaris subsp. vulgaris] >XP_010671014.1 PREDICTED: uncharacterized protein At4g14342 [Beta vulgaris subsp. vulgaris] >KMT16602.1 hypothetical protein BVRB_3g048890 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 185.7 bits (470), Expect = 6.9e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPMLAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of Carg06222 vs. TAIR10
Match: AT3G23325.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-45
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]
BLAST of Carg06222 vs. TAIR10
Match: AT4G14342.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-45
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]
BLAST of Carg06222 vs. Swiss-Prot
Match: sp|Q9LW64|SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-44
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]
BLAST of Carg06222 vs. Swiss-Prot
Match: sp|P58728|SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-44
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWAVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]
BLAST of Carg06222 vs. Swiss-Prot
Match: sp|Q9VHI4|SF3B5_DROME (Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 2.1e-28
Identity = 55/83 (66.27%), Postives = 67/83 (80.72%), Query Frame = 0 

Query: 5  DRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESIG 64
          +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  
Sbjct: 3  ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 65 RERYNFMQKMLLPCGLPPEREDD 88
          R R+N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85

[Close]
BLAST of Carg06222 vs. Swiss-Prot
Match: sp|Q56K13|SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 8.9e-27
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]
BLAST of Carg06222 vs. Swiss-Prot
Match: sp|Q9BWJ5|SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 8.9e-27
Identity = 51/84 (60.71%), Postives = 67/84 (79.76%), Query Frame = 0 

Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GRERYNFMQKMLLPCGLPPEREDD 88
           R R+N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]
BLAST of Carg06222 vs. TrEMBL
Match: tr|A0A218VSR0|A0A218VSR0_PUNGR (Splicing factor subunit OS=Punica granatum OX=22663 GN=CDL15_Pgr022118 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of Carg06222 vs. TrEMBL
Match: tr|A0A2P4LA12|A0A2P4LA12_QUESU (Splicing factor subunit OS=Quercus suber OX=58331 GN=CFP56_65328 PE=3 SV=1)

HSP 1 Score: 186.8 bits (473), Expect = 2.1e-44
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of Carg06222 vs. TrEMBL
Match: tr|A0A1S3AZE4|A0A1S3AZE4_CUCME (Splicing factor subunit OS=Cucumis melo OX=3656 GN=LOC103484426 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of Carg06222 vs. TrEMBL
Match: tr|E5GC24|E5GC24_CUCME (Splicing factor subunit OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

[Close]
BLAST of Carg06222 vs. TrEMBL
Match: tr|A0A0A0KKG4|A0A0A0KKG4_CUCSA (Splicing factor subunit OS=Cucumis sativus OX=3659 GN=Csa_6G520320 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 87/87 (100.00%), Query Frame = 0 

Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFA+AEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAVAEN 60

Query: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 88
          ESIGRERYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDD 87

The following BLAST results are available for this feature:
BLAST of Carg06222 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_015887858.13.1e-44100.00uncharacterized protein At4g14342 [Ziziphus jujuba] >XP_022947444.1 uncharacteri... [more]
XP_004134645.14.1e-4498.85PREDICTED: uncharacterized protein At4g14342 [Cucumis sativus] >XP_008439709.1 P... [more]
XP_021593515.14.1e-4498.85uncharacterized protein At4g14342 [Manihot esculenta] >XP_021640388.1 uncharacte... [more]
CBI23659.35.3e-4498.85unnamed protein product, partial [Vitis vinifera] >PON94782.1 Splicing factor 3B... [more]
XP_010671013.16.9e-4498.85PREDICTED: uncharacterized protein At4g14342 [Beta vulgaris subsp. vulgaris] >XP... [more]
BLAST of Carg06222 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G23325.11.2e-4593.10Splicing factor 3B subunit 5/RDS3 complex subunit 10[more]
AT4G14342.11.2e-4593.10Splicing factor 3B subunit 5/RDS3 complex subunit 10[more]
BLAST of Carg06222 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q9LW64|SF3BA_ARATH2.1e-4493.10Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 P... [more]
sp|P58728|SF3BB_ARATH2.1e-4493.10Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 P... [more]
sp|Q9VHI4|SF3B5_DROME2.1e-2866.27Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV... [more]
sp|Q56K13|SF3B5_BOVIN8.9e-2760.71Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1[more]
sp|Q9BWJ5|SF3B5_HUMAN8.9e-2760.71Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1[more]
BLAST of Carg06222 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A218VSR0|A0A218VSR0_PUNGR2.1e-44100.00Splicing factor subunit OS=Punica granatum OX=22663 GN=CDL15_Pgr022118 PE=3 SV=1[more]
tr|A0A2P4LA12|A0A2P4LA12_QUESU2.1e-44100.00Splicing factor subunit OS=Quercus suber OX=58331 GN=CFP56_65328 PE=3 SV=1[more]
tr|A0A1S3AZE4|A0A1S3AZE4_CUCME2.7e-4498.85Splicing factor subunit OS=Cucumis melo OX=3656 GN=LOC103484426 PE=3 SV=1[more]
tr|E5GC24|E5GC24_CUCME2.7e-4498.85Splicing factor subunit OS=Cucumis melo subsp. melo OX=412675 PE=3 SV=1[more]
tr|A0A0A0KKG4|A0A0A0KKG4_CUCSA2.7e-4498.85Splicing factor subunit OS=Cucumis sativus OX=3659 GN=Csa_6G520320 PE=3 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
Vocabulary: INTERPRO
TermDefinition
IPR017089Splicing_factor_3B_subunit_5
IPR009846SF3b5/RDS3-10
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg06222-RACarg06222-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PFAMPF07189SF3b10coord: 5..82
e-value: 1.8E-37
score: 127.2
IPR009846Splicing factor 3B subunit 5/RDS3 complex subunit 10PANTHERPTHR20978FAMILY NOT NAMEDcoord: 4..86
IPR017089Splicing factor 3B, subunit 5PIRSFPIRSF037010SF3B5coord: 1..87
e-value: 1.1E-39
score: 132.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg06222Cla021515Watermelon (97103) v1carwmB0961
Carg06222Csa3G134970Cucumber (Chinese Long) v2carcuB0975
Carg06222MELO3C006416Melon (DHL92) v3.5.1carmeB0941
Carg06222ClCG05G004290Watermelon (Charleston Gray)carwcgB0935
Carg06222CSPI03G11870Wild cucumber (PI 183967)carcpiB0998
Carg06222Cucsa.255470Cucumber (Gy14) v1carcgyB1077
Carg06222CmoCh06G013270Cucurbita moschata (Rifu)carcmoB1288
Carg06222Lsi05G017370Bottle gourd (USVL1VR-Ls)carlsiB878
Carg06222Cp4.1LG08g03420Cucurbita pepo (Zucchini)carcpeB1333
Carg06222Cp4.1LG03g10170Cucurbita pepo (Zucchini)carcpeB1331
Carg06222CsGy3G012000Cucumber (Gy14) v2carcgybB0948
Carg06222MELO3C006416.2Melon (DHL92) v3.6.1carmedB0947
Carg06222CsaV3_3G012020Cucumber (Chinese Long) v3carcucB1003
Carg06222Cla97C05G085030Watermelon (97103) v2carwmbB1008
Carg06222Bhi01G000518Wax gourdcarwgoB1120
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg06222Carg16559Silver-seed gourdcarcarB274
The following block(s) are covering this gene:
GeneOrganismBlock
Carg06222Silver-seed gourdcarcarB266
Carg06222Silver-seed gourdcarcarB600
Carg06222Silver-seed gourdcarcarB610
Carg06222Silver-seed gourdcarcarB649
Carg06222Cucumber (Gy14) v2carcgybB0945
Carg06222Cucumber (Gy14) v1carcgyB1080
Carg06222Cucurbita maxima (Rimu)carcmaB1320
Carg06222Cucurbita maxima (Rimu)carcmaB1321
Carg06222Cucurbita maxima (Rimu)carcmaB1322
Carg06222Cucurbita maxima (Rimu)carcmaB1323
Carg06222Cucurbita maxima (Rimu)carcmaB1325
Carg06222Cucurbita maxima (Rimu)carcmaB1327
Carg06222Cucurbita moschata (Rifu)carcmoB1284
Carg06222Cucurbita moschata (Rifu)carcmoB1285
Carg06222Cucurbita moschata (Rifu)carcmoB1286
Carg06222Cucurbita moschata (Rifu)carcmoB1287
Carg06222Cucurbita moschata (Rifu)carcmoB1289
Carg06222Cucurbita pepo (Zucchini)carcpeB1328
Carg06222Cucurbita pepo (Zucchini)carcpeB1329
Carg06222Cucurbita pepo (Zucchini)carcpeB1330
Carg06222Cucurbita pepo (Zucchini)carcpeB1332
Carg06222Wild cucumber (PI 183967)carcpiB0995
Carg06222Cucumber (Chinese Long) v2carcuB0974
Carg06222Cucumber (Chinese Long) v3carcucB1001
Carg06222Bottle gourd (USVL1VR-Ls)carlsiB876
Carg06222Bottle gourd (USVL1VR-Ls)carlsiB879
Carg06222Melon (DHL92) v3.5.1carmeB0939
Carg06222Melon (DHL92) v3.6.1carmedB0945
Carg06222Watermelon (Charleston Gray)carwcgB0936
Carg06222Watermelon (Charleston Gray)carwcgB0938
Carg06222Watermelon (97103) v1carwmB0962
Carg06222Watermelon (97103) v1carwmB0960
Carg06222Watermelon (97103) v2carwmbB1009
Carg06222Watermelon (97103) v2carwmbB1011
Carg06222Wax gourdcarwgoB1114
Carg06222Wax gourdcarwgoB1123