Cla97C05G085030.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C05G085030.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Splicing factor 3B subunit 5/RDS3 complex subunit 10
Location	Cla97Chr05 : 3773028 .. 3774945 (-)
Sequence length	264

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCAGGTGCGCTCTAAGAACATAAATCTCTTGTTTTCCGTATCATCTACTCCTGTATTGCCAAATTTTTTTTTTTTTTTTTTTTTTAAATTCATTTCAGCTGTAATTCCAAAACCCTACAACTCATTGCAATCTCATTTCTGAAGATGCTAATTTATACATTTCTTCGTACTTGCATTCCCATTCCATTTAGTTGATAAGACGTTTTTCTTTGTTCTGAATTTTGATATTTCTGATATCGTGGAAGATTAGGAATTTGAGTAATTCCATTTACCGTTTATTCATACATTTGGTTAGTGTTTAAGGTTATTTATTTTTACTTGCCATATGAATCCGAGTTATGCTTGAAAATCAGCTCTGCTTGAAGTGAACAATCAAGAACGGGGAATACATACATGCCAAGTCCATTGATTCCTAGGAAAGGTTACCATTTTGAGTCCCTAGTTTATTTAAGTTATTTTCCTTATTTTATTCAGATGGTTTTTAGTGTGGGTGATAACTAGTGTTTTTTAAAGCTGAAGGCACAATAGTCTTCTGCAATTTAAGCTCAATGTCTAAAGTTTTTTTTAGAAAGGAGAAAGCAAGTGGGAATATGAAAAAAAAAAACGAAAACACAGGAAATTTTGCAATTAGGCTTAATAAATTTTATTTGTGGTTCATAAAGAAGGAAAGCCCTAATTATTGGTAACTTTTTTAAAATAACGAAAAATCCCTAAGGCCAAGTCGCGATTGTGTACCAAGCCGTTTCAAGGCGAGGTGCCAGACTTGCTCTACAGACTAGGCACGCGCTTGGATGGGCTTTTTAAAATACAGTGATAACCTGTAATCCATTTTTTGAATCTAAGATCTGATCATGGCCTCCTGTCTTTACTTGAGATTGTCTCAGTGGGCGCTAATATTGGTTTTGGATATTCAATACAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCCAAATATGTGGGAACTGGGCATGCCGATTTAAATAGATTGTAAGTTTCCTTATTCCTTTAAAGCCTTCATCTTATATTGCTATGCATAGTAGTTTGTAAACCTCAGTCCACATCTCTGTGTGTACAGCGAATGGACCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGGTTGATACTTTGCTTTATCTTTTTGTTTTTATTTGTCTTTTCCCCGGCAAGTTTCCTCTTCTTAGCATTAGTACCCCTCCCCCCTATATTTTTTGTTGTTTGAAGAACCATTTCAGATGTGGCTAGTATATGTTGTTATCGTTGTTATAGCTTTGAAATCTATGTTTGTTATTTTTGGATAATACCCTCCCCCCCCCCCCCCACAAAAAAAAAAAAAAAAAAAAACAGAGAGAGAGGGACAGATTGAAGATGGGTATTATCAATGGGCAATTTTTCTCTTCTTTTCTTTTTTTAAGCCAACAATTGCTGAGGTTTCTGCATACATTCATCACTACTTTCACTTGTCCTATTATTACTTATTAGGTGAATTGTTCCTTTCAATTTTTCAATTTTTTGTTTTCAGTGTGGCCTTTTATCTTCACTTGAACTGTAGCCCCAAGTAATTTCATTCTTCACAACATGAAGTGTCAAGAATAAATTGGTCCTACCACTTTTGAAATGTGGGGTTGTGCCCATCATGTAACTAAACGTCTTTCATAATGAGTGATAGAAAATTTCCTCATAGTTTCTCCTGGAAATCATTTACAGCTTAATTAGATAAAGAAAGGTAATTTTTAACACTCGTTTTTTGTTTTTTTGTTCTTTTTGTAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

mRNA sequence

ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCCAAATATGTGGGAACTGGGCATGCCGATTTAAATAGATTCGAATGGACCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Coding sequence (CDS)

ATGCAGGCCAGCGATAGATTTAACATCAATTCCCAGCTTGAGCACCTGCAGGCCAAATATGTGGGAACTGGGCATGCCGATTTAAATAGATTCGAATGGACCGTGAACATTCAGCGTGATAGCTATGCATCATATGTTGGACATTACCCCATTCTAGCTTACTTCGCTATAGCAGAAAATGAATCCATTGGAAGGGAACACTACAATTTTATGCAGAAAATGCTATTACCTTGCGGCCTTCCTCCAGAAAGAGAAGATGATTGA

Protein sequence

MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAENESIGREHYNFMQKMLLPCGLPPEREDD

Homology

[Close]

BLAST of Cla97C05G085030.1 vs. NCBI nr
Match: XP_006489711.1 (uncharacterized protein At4g14342 [Citrus sinensis] >XP_006489712.1 uncharacterized protein At4g14342 [Citrus sinensis] >XP_008438507.1 PREDICTED: uncharacterized protein At4g14342-like isoform X1 [Cucumis melo] >XP_008438508.1 PREDICTED: uncharacterized protein At4g14342-like isoform X2 [Cucumis melo] >XP_011650926.1 PREDICTED: uncharacterized protein At4g14342-like isoform X1 [Cucumis sativus] >XP_011650927.1 PREDICTED: uncharacterized protein At4g14342-like isoform X2 [Cucumis sativus] >XP_018812282.1 PREDICTED: uncharacterized protein At4g14342 [Juglans regia] >KGN56849.1 hypothetical protein Csa_3G134970 [Cucumis sativus])

HSP 1 Score: 186.4 bits (472), Expect = 4.1e-44
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030.1 vs. NCBI nr
Match: ESR33493.1 (hypothetical protein CICLE_v10006856mg [Citrus clementina])

HSP 1 Score: 185.3 bits (469), Expect = 9.0e-44
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
           MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYF+IAEN
Sbjct: 104 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAEN 163

Query: 61  ESIGREHYNFMQKMLLPCGLPPEREDD 88
           ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 164 ESIGREHYNFMQKMLLPCGLPPEREDD 190

[Close]

BLAST of Cla97C05G085030.1 vs. NCBI nr
Match: GAY60739.1 (hypothetical protein CUMW_204370 [Citrus unshiu])

HSP 1 Score: 185.3 bits (469), Expect = 9.0e-44
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
           MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYF+IAEN
Sbjct: 104 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAEN 163

Query: 61  ESIGREHYNFMQKMLLPCGLPPEREDD 88
           ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 164 ESIGREHYNFMQKMLLPCGLPPEREDD 190

[Close]

BLAST of Cla97C05G085030.1 vs. NCBI nr
Match: XP_024045677.1 (uncharacterized protein At4g14342 [Citrus clementina] >XP_024045682.1 uncharacterized protein At4g14342 [Citrus clementina])

HSP 1 Score: 185.3 bits (469), Expect = 9.0e-44
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYF+IAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030.1 vs. NCBI nr
Match: XP_006428364.1 (uncharacterized protein At4g14342 [Citrus clementina] >XP_024038189.1 uncharacterized protein At4g14342 [Citrus clementina] >XP_024948508.1 uncharacterized protein At4g14342 [Citrus sinensis] >XP_024948509.1 uncharacterized protein At4g14342 [Citrus sinensis] >ESR41603.1 hypothetical protein CICLE_v10013219mg [Citrus clementina] >ESR41604.1 hypothetical protein CICLE_v10013219mg [Citrus clementina] >KDO49993.1 hypothetical protein CISIN_1g047539mg [Citrus sinensis] >GAY59853.1 hypothetical protein CUMW_197660 [Citrus unshiu] >GAY59854.1 hypothetical protein CUMW_197660 [Citrus unshiu])

HSP 1 Score: 184.9 bits (468), Expect = 1.2e-43
Identity = 84/87 (96.55%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASY+GHYP+LAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYIGHYPMLAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030.1 vs. TrEMBL
Match: tr|A0A1S3AX72|A0A1S3AX72_CUCME (Splicing factor subunit OS=Cucumis melo OX=3656 GN=LOC103483584 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030.1 vs. TrEMBL
Match: tr|A0A2I4DYR2|A0A2I4DYR2_9ROSI (Splicing factor subunit OS=Juglans regia OX=51240 GN=LOC108984696 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030.1 vs. TrEMBL
Match: tr|A0A0A0L732|A0A0A0L732_CUCSA (Splicing factor subunit OS=Cucumis sativus OX=3659 GN=Csa_3G134970 PE=3 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 2.7e-44
Identity = 86/87 (98.85%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 87

[Close]

BLAST of Cla97C05G085030.1 vs. TrEMBL
Match: tr|V4RHN1|V4RHN1_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006856mg PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.0e-44
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
           MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYF+IAEN
Sbjct: 104 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAEN 163

Query: 61  ESIGREHYNFMQKMLLPCGLPPEREDD 88
           ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 164 ESIGREHYNFMQKMLLPCGLPPEREDD 190

[Close]

BLAST of Cla97C05G085030.1 vs. TrEMBL
Match: tr|A0A2H5Q7X7|A0A2H5Q7X7_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_204370 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 6.0e-44
Identity = 85/87 (97.70%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1   MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
           MQASDRFNINSQLEHLQAKYVGTGHADLNRFEW VNIQRDSYASYVGHYPILAYF+IAEN
Sbjct: 104 MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWAVNIQRDSYASYVGHYPILAYFSIAEN 163

Query: 61  ESIGREHYNFMQKMLLPCGLPPEREDD 88
           ESIGREHYNFMQKMLLPCGLPPEREDD
Sbjct: 164 ESIGREHYNFMQKMLLPCGLPPEREDD 190

[Close]

BLAST of Cla97C05G085030.1 vs. Swiss-Prot
Match: sp|Q9LW64|SF3BA_ARATH (Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 PE=3 SV=1)

HSP 1 Score: 179.1 bits (453), Expect = 2.1e-44
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWTVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGRE YNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of Cla97C05G085030.1 vs. Swiss-Prot
Match: sp|P58728|SF3BB_ARATH (Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 PE=3 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 2.3e-43
Identity = 79/87 (90.80%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGRE YNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

[Close]

BLAST of Cla97C05G085030.1 vs. Swiss-Prot
Match: sp|Q9VHI4|SF3B5_DROME (Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 8.1e-28
Identity = 54/83 (65.06%), Postives = 66/83 (79.52%), Query Frame = 0


Query: 5  DRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAENESIG 64
          +R+NI+SQLEHLQ+KY+GTGHAD  +FEW  N  RDS ASY+GHY IL YFAIAENES  
Sbjct: 3  ERYNIHSQLEHLQSKYIGTGHADTTKFEWLTNQHRDSLASYMGHYDILNYFAIAENESKA 62

Query: 65 REHYNFMQKMLLPCGLPPEREDD 88
          R  +N M++ML PCG PPE+ +D
Sbjct: 63 RVRFNLMERMLQPCGPPPEKLED 85

[Close]

BLAST of Cla97C05G085030.1 vs. Swiss-Prot
Match: sp|Q56K13|SF3B5_BOVIN (Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-26
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GREHYNFMQKMLLPCGLPPEREDD 88
           R  +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]

BLAST of Cla97C05G085030.1 vs. Swiss-Prot
Match: sp|Q9BWJ5|SF3B5_HUMAN (Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1)

HSP 1 Score: 118.6 bits (296), Expect = 3.4e-26
Identity = 50/84 (59.52%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 4  SDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAENESI 63
          +DR+ I+SQLEHLQ+KY+GTGHAD  ++EW VN  RDSY SY+GH+ +L YFAIAENES 
Sbjct: 2  TDRYTIHSQLEHLQSKYIGTGHADTTKWEWLVNQHRDSYCSYMGHFDLLNYFAIAENESK 61

Query: 64 GREHYNFMQKMLLPCGLPPEREDD 88
           R  +N M+KML PCG P ++ ++
Sbjct: 62 ARVRFNLMEKMLQPCGPPADKPEE 85

[Close]

BLAST of Cla97C05G085030.1 vs. TAIR10
Match: AT3G23325.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)

HSP 1 Score: 179.1 bits (453), Expect = 1.2e-45
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEWTVNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWTVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGRE YNFMQKMLLPCGLPPERED+
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREDE 87

[Close]

BLAST of Cla97C05G085030.1 vs. TAIR10
Match: AT4G14342.1 (Splicing factor 3B subunit 5/RDS3 complex subunit 10)

HSP 1 Score: 175.6 bits (444), Expect = 1.3e-44
Identity = 79/87 (90.80%), Postives = 85/87 (97.70%), Query Frame = 0


Query: 1  MQASDRFNINSQLEHLQAKYVGTGHADLNRFEWTVNIQRDSYASYVGHYPILAYFAIAEN 60
          MQASDRFNINSQLEHLQAKYVGTGHADL+RFEW VNIQRDSYASY+GHYP+L+YFAIAEN
Sbjct: 1  MQASDRFNINSQLEHLQAKYVGTGHADLSRFEWAVNIQRDSYASYIGHYPMLSYFAIAEN 60

Query: 61 ESIGREHYNFMQKMLLPCGLPPEREDD 88
          ESIGRE YNFMQKMLLPCGLPPERE++
Sbjct: 61 ESIGRERYNFMQKMLLPCGLPPEREEE 87

The following BLAST results are available for this feature:

BLAST of Cla97C05G085030.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_006489711.1	4.1e-44	98.85	uncharacterized protein At4g14342 [Citrus sinensis] >XP_006489712.1 uncharacteri...	[more]
ESR33493.1	9.0e-44	97.70	hypothetical protein CICLE_v10006856mg [Citrus clementina]	[more]
GAY60739.1	9.0e-44	97.70	hypothetical protein CUMW_204370 [Citrus unshiu]	[more]
XP_024045677.1	9.0e-44	97.70	uncharacterized protein At4g14342 [Citrus clementina] >XP_024045682.1 uncharacte...	[more]
XP_006428364.1	1.2e-43	96.55	uncharacterized protein At4g14342 [Citrus clementina] >XP_024038189.1 uncharacte...	[more]

BLAST of Cla97C05G085030.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AX72\|A0A1S3AX72_CUCME	2.7e-44	98.85	Splicing factor subunit OS=Cucumis melo OX=3656 GN=LOC103483584 PE=3 SV=1	[more]
tr\|A0A2I4DYR2\|A0A2I4DYR2_9ROSI	2.7e-44	98.85	Splicing factor subunit OS=Juglans regia OX=51240 GN=LOC108984696 PE=3 SV=1	[more]
tr\|A0A0A0L732\|A0A0A0L732_CUCSA	2.7e-44	98.85	Splicing factor subunit OS=Cucumis sativus OX=3659 GN=Csa_3G134970 PE=3 SV=1	[more]
tr\|V4RHN1\|V4RHN1_9ROSI	6.0e-44	97.70	Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10006856mg PE=4 ...	[more]
tr\|A0A2H5Q7X7\|A0A2H5Q7X7_CITUN	6.0e-44	97.70	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_204370 PE=4 SV=1	[more]

BLAST of Cla97C05G085030.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9LW64\|SF3BA_ARATH	2.1e-44	93.10	Uncharacterized protein At3g23325 OS=Arabidopsis thaliana OX=3702 GN=At3g23325 P...	[more]
sp\|P58728\|SF3BB_ARATH	2.3e-43	90.80	Uncharacterized protein At4g14342 OS=Arabidopsis thaliana OX=3702 GN=At4g14342 P...	[more]
sp\|Q9VHI4\|SF3B5_DROME	8.1e-28	65.06	Splicing factor 3B subunit 5 OS=Drosophila melanogaster OX=7227 GN=Sf3b5 PE=1 SV...	[more]
sp\|Q56K13\|SF3B5_BOVIN	3.4e-26	59.52	Splicing factor 3B subunit 5 OS=Bos taurus OX=9913 GN=SF3B5 PE=3 SV=1	[more]
sp\|Q9BWJ5\|SF3B5_HUMAN	3.4e-26	59.52	Splicing factor 3B subunit 5 OS=Homo sapiens OX=9606 GN=SF3B5 PE=1 SV=1	[more]

BLAST of Cla97C05G085030.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G23325.1	1.2e-45	93.10	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]
AT4G14342.1	1.3e-44	90.80	Splicing factor 3B subunit 5/RDS3 complex subunit 10	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **Biological Process**
Term	Definition
GO:0000398	mRNA splicing, via spliceosome

Vocabulary: **INTERPRO**
Term	Definition
IPR017089	Splicing_factor_3B_subunit_5
IPR009846	SF3b5/RDS3-10

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0000398	mRNA splicing, via spliceosome

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C05G085030	Cla97C05G085030	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C05G085030.1	Cla97C05G085030.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C05G085030.1.CDS.4	Cla97C05G085030.1.CDS.4	CDS
Cla97C05G085030.1.CDS.3	Cla97C05G085030.1.CDS.3	CDS
Cla97C05G085030.1.CDS.2	Cla97C05G085030.1.CDS.2	CDS
Cla97C05G085030.1.CDS.1	Cla97C05G085030.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C05G085030.1.exon.4	Cla97C05G085030.1.exon.4	exon
Cla97C05G085030.1.exon.3	Cla97C05G085030.1.exon.3	exon
Cla97C05G085030.1.exon.2	Cla97C05G085030.1.exon.2	exon
Cla97C05G085030.1.exon.1	Cla97C05G085030.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PFAM	PF07189	SF3b10	coord: 5..82 e-value: 1.2E-36 score: 124.5
IPR009846	Splicing factor 3B subunit 5/RDS3 complex subunit 10	PANTHER	PTHR20978	FAMILY NOT NAMED	coord: 4..86
IPR017089	Splicing factor 3B, subunit 5	PIRSF	PIRSF037010	SF3B5	coord: 1..87 e-value: 9.0E-39 score: 129.4