Cla97C02G043640 (gene) Watermelon (97103) v2

Overview
NameCla97C02G043640
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr02 : 31809114 .. 31809350 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGA

mRNA sequence

ATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGA

Coding sequence (CDS)

ATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGA

Protein sequence

MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCGGG
Homology
[Close]
BLAST of Cla97C02G043640 vs. NCBI nr
Match: XP_015382723.1 (glycine-rich protein 23-like [Citrus sinensis])

HSP 1 Score: 58.2 bits (139), Expect = 1.5e-05
Identity = 30/62 (48.39%), Postives = 41/62 (66.13%), Query Frame = 0 

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGG 60
          M R +LV  GA   +      GG+  L +++ S+S+ISMVIFACGD  +P+K+R N GGG
Sbjct: 1  MARELLVLAGAVHAESYF---GGILFLCMVVASVSMISMVIFACGDDSNPKKRRTNYGGG 59

Query: 61 GC 63
          GC
Sbjct: 61 GC 59

[Close]
BLAST of Cla97C02G043640 vs. NCBI nr
Match: GAY54286.1 (hypothetical protein CUMW_155540 [Citrus unshiu])

HSP 1 Score: 56.6 bits (135), Expect = 4.3e-05
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGG 59
          MGR + V   A   + N    GGL LL +++ SIS+ISMVIFACGD G P++ R NGG
Sbjct: 1  MGRQLSVLAAAAHEESNF---GGLVLLCMVVASISMISMVIFACGDDGHPKRHRTNGG 55

[Close]
BLAST of Cla97C02G043640 vs. NCBI nr
Match: XP_006446801.1 (acanthoscurrin-1 [Citrus clementina] >ESR60041.1 hypothetical protein CICLE_v10017260mg [Citrus clementina])

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-04
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0 

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGG 59
          M R +LV   A   + N    GG+F L +++ S S+ISMVIFACGD G P+K R +GG
Sbjct: 1  MARELLVLAAAAHAESNF---GGIFSLCMVVASFSMISMVIFACGDDGSPKKNRTSGG 55

[Close]
BLAST of Cla97C02G043640 vs. TrEMBL
Match: tr|A0A2H5PPJ4|A0A2H5PPJ4_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_155540 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 2.9e-05
Identity = 30/58 (51.72%), Postives = 38/58 (65.52%), Query Frame = 0 

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGG 59
          MGR + V   A   + N    GGL LL +++ SIS+ISMVIFACGD G P++ R NGG
Sbjct: 1  MGRQLSVLAAAAHEESNF---GGLVLLCMVVASISMISMVIFACGDDGHPKRHRTNGG 55

[Close]
BLAST of Cla97C02G043640 vs. TrEMBL
Match: tr|V4UCP2|V4UCP2_9ROSI (Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017260mg PE=4 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 1.4e-04
Identity = 28/58 (48.28%), Postives = 37/58 (63.79%), Query Frame = 0 

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGG 59
          M R +LV   A   + N    GG+F L +++ S S+ISMVIFACGD G P+K R +GG
Sbjct: 1  MARELLVLAAAAHAESNF---GGIFSLCMVVASFSMISMVIFACGDDGSPKKNRTSGG 55

The following BLAST results are available for this feature:
BLAST of Cla97C02G043640 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_015382723.11.5e-0548.39glycine-rich protein 23-like [Citrus sinensis][more]
GAY54286.14.3e-0551.72hypothetical protein CUMW_155540 [Citrus unshiu][more]
XP_006446801.12.2e-0448.28acanthoscurrin-1 [Citrus clementina] >ESR60041.1 hypothetical protein CICLE_v100... [more]
BLAST of Cla97C02G043640 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A2H5PPJ4|A0A2H5PPJ4_CITUN2.9e-0551.72Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_155540 PE=4 SV=1[more]
tr|V4UCP2|V4UCP2_9ROSI1.4e-0448.28Uncharacterized protein OS=Citrus clementina OX=85681 GN=CICLE_v10017260mg PE=4 ... [more]
BLAST of Cla97C02G043640 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C02G043640 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G043640.1Cla97C02G043640.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35420FAMILY NOT NAMEDcoord: 1..77

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C02G043640Cla013538Watermelon (97103) v1wmwmbB316
Cla97C02G043640ClCG02G017860Watermelon (Charleston Gray)wcgwmbB138
Cla97C02G043640Bhi10G000835Wax gourdwgowmbB361
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G043640Watermelon (97103) v2wmbwmbB097
Cla97C02G043640Watermelon (97103) v2wmbwmbB105
Cla97C02G043640Silver-seed gourdcarwmbB0024
Cla97C02G043640Silver-seed gourdcarwmbB0028
Cla97C02G043640Silver-seed gourdcarwmbB0751
Cla97C02G043640Silver-seed gourdcarwmbB0438
Cla97C02G043640Cucumber (Gy14) v2cgybwmbB031
Cla97C02G043640Cucumber (Gy14) v2cgybwmbB409
Cla97C02G043640Cucumber (Gy14) v1cgywmbB389
Cla97C02G043640Cucumber (Gy14) v1cgywmbB664
Cla97C02G043640Cucurbita maxima (Rimu)cmawmbB103
Cla97C02G043640Cucurbita maxima (Rimu)cmawmbB222
Cla97C02G043640Cucurbita maxima (Rimu)cmawmbB528
Cla97C02G043640Cucurbita maxima (Rimu)cmawmbB568
Cla97C02G043640Cucurbita maxima (Rimu)cmawmbB587
Cla97C02G043640Cucurbita maxima (Rimu)cmawmbB622
Cla97C02G043640Cucurbita maxima (Rimu)cmawmbB630
Cla97C02G043640Cucurbita moschata (Rifu)cmowmbB090
Cla97C02G043640Cucurbita moschata (Rifu)cmowmbB205
Cla97C02G043640Cucurbita moschata (Rifu)cmowmbB508
Cla97C02G043640Melon (DHL92) v3.6.1medwmbB098
Cla97C02G043640Cucurbita moschata (Rifu)cmowmbB545
Cla97C02G043640Cucurbita moschata (Rifu)cmowmbB566
Cla97C02G043640Cucurbita moschata (Rifu)cmowmbB597
Cla97C02G043640Cucurbita moschata (Rifu)cmowmbB603
Cla97C02G043640Wild cucumber (PI 183967)cpiwmbB031
Cla97C02G043640Wild cucumber (PI 183967)cpiwmbB453
Cla97C02G043640Wild cucumber (PI 183967)cpiwmbB471
Cla97C02G043640Cucumber (Chinese Long) v3cucwmbB447
Cla97C02G043640Cucumber (Chinese Long) v2cuwmbB429
Cla97C02G043640Bottle gourd (USVL1VR-Ls)lsiwmbB052
Cla97C02G043640Bottle gourd (USVL1VR-Ls)lsiwmbB050
Cla97C02G043640Melon (DHL92) v3.5.1mewmbB104
Cla97C02G043640Watermelon (Charleston Gray)wcgwmbB183
Cla97C02G043640Watermelon (Charleston Gray)wcgwmbB298
Cla97C02G043640Watermelon (97103) v1wmwmbB121
Cla97C02G043640Watermelon (97103) v1wmwmbB156
Cla97C02G043640Wax gourdwgowmbB245
Cla97C02G043640Wax gourdwgowmbB368