Cla013538 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013538
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr2 : 28265073 .. 28265309 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGA

mRNA sequence

ATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGA

Coding sequence (CDS)

ATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGA

Protein sequence

MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCGGG

Homology

[Close]

BLAST of Cla013538 vs. Swiss-Prot
Match: Y5768_DICDI (Putative uncharacterized protein DDB_G0287183 OS=Dictyostelium discoideum GN=DDB_G0287183 PE=5 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-06
Identity = 24/54 (44.44%), Postives = 28/54 (51.85%), Query Frame = 1


Query: 25 FLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCGGG 79
          F++S   +S      +     + G+       GGGGGCGGGGCGGGG GG GGG
Sbjct: 25 FVMSASFISSETNDDICCLSKEFGNTTSSGGGGGGGGCGGGGCGGGGGGGGGGG 78

HSP 2 Score: 41.6 bits (96), Expect = 4.7e-03
Identity = 17/20 (85.00%), Postives = 15/20 (75.00%), Query Frame = 1


Query: 58 GGGGCGGGGCGGGGCGGCGG 78
          GGGGCGGGG GGGG GG GG
Sbjct: 63 GGGGCGGGGGGGGGGGGGGG 82

HSP 3 Score: 35.4 bits (80), Expect = 3.3e-01
Identity = 17/23 (73.91%), Postives = 15/23 (65.22%), Query Frame = 1


Query: 57 GGGGG--CGGGGCGGGGCGGCGG 78
          GG GG  CGGGG GGGG GG GG
Sbjct: 60 GGCGGGGCGGGGGGGGGGGGGGG 82

[Close]

BLAST of Cla013538 vs. TrEMBL
Match: A0A0L9TEF9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan618s000900 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-11
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 1


Query: 1  MGRPILVATGA---GFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNG 60
          M R  +V  G    G  +  ++ S  +FL  +I+ S+S+IS++IFACGD     K+R   
Sbjct: 1  MARHFVVVDGGESNGGEEALVLHSSPIFLFLMIIASLSIISIIIFACGDDNKDTKRRRGD 60

Query: 61 GGGGCGGGGCGGGGCGGCGGG 79
          GGGG GGGG GGGG GGCGGG
Sbjct: 61 GGGGDGGGG-GGGGGGGCGGG 80

[Close]

BLAST of Cla013538 vs. TrEMBL
Match: A0A0L9TEF9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan618s000900 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 1


Query: 1  MGRPILVATGA---GFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYN- 60
          M R  +V  G    G  +  ++ S  +FL  +I+ S+S+IS++IFACGD     K+R   
Sbjct: 1  MARHFVVVDGGESNGGEEALVLHSSPIFLFLMIIASLSIISIIIFACGDDNKDTKRRRGD 60

Query: 61 -----------GGGGGCGGGGCGGGGCGGCGGG 79
                     GGGGGCGGGG GGGGCGG GGG
Sbjct: 61 GGGGDGGGGGGGGGGGCGGGG-GGGGCGGGGGG 92

HSP 2 Score: 49.3 bits (116), Expect = 2.5e-03
Identity = 23/35 (65.71%), Postives = 23/35 (65.71%), Query Frame = 1


Query: 44  CGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCGGG 79
           CG  G        GGGGGCGGGG GGGGCGG GGG
Sbjct: 77  CGGGGGGGGCGGGGGGGGCGGGG-GGGGCGGGGGG 110

HSP 3 Score: 47.0 bits (110), Expect = 1.2e-02
Identity = 24/40 (60.00%), Postives = 24/40 (60.00%), Query Frame = 1


Query: 44  CGDSGDPQKKRYNGGGGGCGGGG----C-GGGGCGGCGGG 79
           CG  G        GGGGGCGGGG    C GGGG GGCGGG
Sbjct: 77  CGGGGGGGGCGGGGGGGGCGGGGGGGGCGGGGGGGGCGGG 116

[Close]

BLAST of Cla013538 vs. NCBI nr
Match: gi|567908975|ref|XP_006446801.1| (hypothetical protein CICLE_v10017260mg [Citrus clementina])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1


Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNG--- 60
          M R +LV   A   + N    GG+F L +++ S S+ISMVIFACGD G P+K R +G   
Sbjct: 1  MARELLVLAAAAHAESNF---GGIFSLCMVVASFSMISMVIFACGDDGSPKKNRTSGGFV 60

Query: 61 ------------GGGGC--GGGGCGGGGCGGCGGG 79
                      GGGGC  GGGGCGGGGCGG GGG
Sbjct: 61 GGGAGLGGLGGAGGGGCGGGGGGCGGGGCGGGGGG 92

[Close]

BLAST of Cla013538 vs. NCBI nr
Match: gi|567908975|ref|XP_006446801.1| (hypothetical protein CICLE_v10017260mg [Citrus clementina])

HSP 1 Score: 52.0 bits (123), Expect = 5.5e-04
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 1


Query: 57 GGGGGCGGGGCGGGGCGGCGGG 79
          GGGGGCGGGGCGGGG GGCGGG
Sbjct: 76 GGGGGCGGGGCGGGG-GGCGGG 96

HSP 2 Score: 48.5 bits (114), Expect = 6.1e-03
Identity = 21/29 (72.41%), Postives = 21/29 (72.41%), Query Frame = 1


Query: 57  GGGGGCG-------GGGCGGGGCGGCGGG 79
           GGGGGCG       GGGCGGGGCGG GGG
Sbjct: 76  GGGGGCGGGGCGGGGGGCGGGGCGGGGGG 104

HSP 3 Score: 46.6 bits (109), Expect = 2.3e-02
Identity = 21/33 (63.64%), Postives = 21/33 (63.64%), Query Frame = 1


Query: 44  CGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCG 77
           CG  G        GGGGGCGGGGCGGGG GG G
Sbjct: 81  CGGGG------CGGGGGGCGGGGCGGGGGGGGG 107

HSP 4 Score: 42.4 bits (98), Expect = 4.4e-01
Identity = 21/34 (61.76%), Postives = 21/34 (61.76%), Query Frame = 1


Query: 44  CGDSGDPQKKRYNGGG-GGCGGGGCGGGGCGGCG 77
           CG  G        GGG GGCGGGGCGGGG GG G
Sbjct: 74  CGGGGGGCGGGGCGGGGGGCGGGGCGGGGGGGGG 107

HSP 5 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1


Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGG 60
          M R +LV  GA   +      GG+  L +++ S+S+ISMVIFACGD  +P+K+R N GGG
Sbjct: 1  MARELLVLAGAVHAESYF---GGILFLCMVVASVSMISMVIFACGDDSNPKKRRTNYGGG 60

Query: 61 GC----GGGGCGGGGCGGCGGG 79
          GC    GGG CGGGG G CGGG
Sbjct: 61 GCGGCGGGGACGGGGGGACGGG 79

[Close]

BLAST of Cla013538 vs. NCBI nr
Match: gi|985434705|ref|XP_015382723.1| (PREDICTED: loricrin-like [Citrus sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-10
Identity = 44/99 (44.44%), Postives = 55/99 (55.56%), Query Frame = 1


Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKR--YNGG 60
          M R +LV  GA   +      GG+  L +++ S+S+ISMVIFACGD  +P+K+R  Y GG
Sbjct: 1  MARELLVLAGAVHAESYF---GGILFLCMVVASVSMISMVIFACGDDSNPKKRRTNYGGG 60

Query: 61 G-------------------GGCGGGGCGGGGCGGCGGG 79
          G                   GG GGGGCGGGG GG GGG
Sbjct: 61 GCGGCGGGGACGGGGGGACGGG-GGGGCGGGGGGGGGGG 95

HSP 2 Score: 46.6 bits (109), Expect = 2.3e-02
Identity = 22/36 (61.11%), Postives = 22/36 (61.11%), Query Frame = 1


Query: 43  ACGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCGGG 79
           ACG  G        GGG G GGGG GGGG GGCGGG
Sbjct: 67  ACGGGGGGACGGGGGGGCGGGGGGGGGGGGGGCGGG 102

HSP 3 Score: 42.0 bits (97), Expect = 5.7e-01
Identity = 19/33 (57.58%), Postives = 19/33 (57.58%), Query Frame = 1


Query: 43  ACGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGC 76
           ACG  G        GGGGG GGGGCGGGG   C
Sbjct: 75  ACGGGGGGGCGGGGGGGGGGGGGGCGGGGGATC 107

HSP 4 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 1


Query: 7  VATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGD--PQKKRYNGGGGGCGG 66
          V + AGF    L SS    LL +I++S+S+ISMVIFACGDSG      +R   GGGGCGG
Sbjct: 13 VHSEAGFL---LDSSEAFLLLCMIVVSLSIISMVIFACGDSGSGGGGGRRRKSGGGGCGG 72

Query: 67 GGCGGG-GCGGCGGG 79
          GGCGGG G GGCGGG
Sbjct: 73 GGCGGGDGGGGCGGG 84

[Close]

BLAST of Cla013538 vs. NCBI nr
Match: gi|566171168|ref|XP_006383269.1| (hypothetical protein POPTR_0005s13010g [Populus trichocarpa])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 1


Query: 7  VATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQ---KKRYNGGGG--- 66
          V + AGF    L SS    LL +I++S+S+ISMVIFACGDSG      ++R +GGGG   
Sbjct: 13 VHSEAGFL---LDSSEAFLLLCMIVVSLSIISMVIFACGDSGSGGGGGRRRKSGGGGCGG 72

Query: 67 ----------GC-GGGGCGGG-GCGGCGGG 79
                    GC GGGGCGGG G GGCGGG
Sbjct: 73 GGCGGGDGGGGCGGGGGCGGGTGGGGCGGG 99

HSP 2 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 10 GAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKR------YNGGGGGCG 69
          G G     +  SG + ++ ++++SI +ISMVIFACGDS + +KK       +NGGGGGCG
Sbjct: 7  GVGDGGSAIEGSGLMIMVGMVVVSILMISMVIFACGDSSNGRKKSHWVSGGHNGGGGGCG 66

Query: 70 GGGCGGGGCGGCGGG 79
          G G GGGGCGG G G
Sbjct: 67 GDGGGGGGCGGGGDG 81

[Close]

BLAST of Cla013538 vs. NCBI nr
Match: gi|697095740|ref|XP_009612867.1| (PREDICTED: acanthoscurrin-1-like [Nicotiana tomentosiformis])

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1


Query: 10 GAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRY-------------- 69
          G G     +  SG + ++ ++++SI +ISMVIFACGDS + +KK +              
Sbjct: 7  GVGDGGSAIEGSGLMIMVGMVVVSILMISMVIFACGDSSNGRKKSHWVSGGHNGGGGGCG 66

Query: 70 --NGGGGGCGGGGCGGGGCGGCGGG 79
             GGGGGCGGGG GGGG GGCGGG
Sbjct: 67 GDGGGGGGCGGGGDGGGGGGGCGGG 91

HSP 2 Score: 71.2 bits (173), Expect = 8.8e-10
Identity = 41/95 (43.16%), Postives = 53/95 (55.79%), Query Frame = 1


Query: 10  GAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRY------NGGGGGCG 69
           G G     +  SG + ++ ++++SI +ISMVIFACGDS + +KK +      NGGGGGCG
Sbjct: 7   GVGDGGSAIEGSGLMIMVGMVVVSILMISMVIFACGDSSNGRKKSHWVSGGHNGGGGGCG 66

Query: 70  G-----GGC---------------GGGGCGGCGGG 79
           G     GGC               GGGG GGCGGG
Sbjct: 67  GDGGGGGGCGGGGDGGGGGGGCGGGGGGGGGCGGG 101

HSP 3 Score: 40.8 bits (94), Expect = 1.3e+00
Identity = 20/34 (58.82%), Postives = 20/34 (58.82%), Query Frame = 1


Query: 44  CGDSGDPQKKR--YNGGGGGCGGGGCGGGGCGGC 76
           CG  GD         GGGGG GG G GGGGCGGC
Sbjct: 75  CGGGGDGGGGGGGCGGGGGGGGGCGGGGGGCGGC 108

HSP 4 Score: 75.1 bits (183), Expect = 6.1e-11
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1


Query: 26 LLSVILLSISLISMVIFACGDS-GDPQKKRYN-----GGGGGCGGGGCGGGGCGGCGGG 79
          +L + L+S+S++SMVIFACGDS G   +KR+N     GGGGGCGG G GGGG GGCGGG
Sbjct: 1  MLCMFLVSMSILSMVIFACGDSDGHNARKRHNQHSGGGGGGGCGGDGGGGGGGGGCGGG 59

The following BLAST results are available for this feature:

BLAST of Cla013538 vs. Swiss-Prot


Match Name	E-value	Identity	Description
Y5768_DICDI	2.6e-06	44.44	Putative uncharacterized protein DDB_G0287183 OS=Dictyostelium discoideum GN=DDB...	[more]

BLAST of Cla013538 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0L9TEF9_PHAAN	4.2e-11	48.15	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan618s000900 PE=4 SV=1	[more]
A0A0L9TEF9_PHAAN	1.2e-10	44.09	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan618s000900 PE=4 SV=1	[more]

BLAST of Cla013538 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|567908975\|ref\|XP_006446801.1\|	1.2e-14	49.47	hypothetical protein CICLE_v10017260mg [Citrus clementina]	[more]
gi\|567908975\|ref\|XP_006446801.1\|	5.5e-04	95.45	hypothetical protein CICLE_v10017260mg [Citrus clementina]	[more]
gi\|985434705\|ref\|XP_015382723.1\|	3.0e-10	44.44	PREDICTED: loricrin-like [Citrus sinensis]	[more]
gi\|566171168\|ref\|XP_006383269.1\|	2.0e-09	51.11	hypothetical protein POPTR_0005s13010g [Populus trichocarpa]	[more]
gi\|697095740\|ref\|XP_009612867.1\|	2.1e-11	45.88	PREDICTED: acanthoscurrin-1-like [Nicotiana tomentosiformis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013538	Cla013538.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR35420	FAMILY NOT NAMED	coord: 2..78 score: 7.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013538	Cla97C02G043640	Watermelon (97103) v2	wmwmbB316
Cla013538	ClCG02G017860	Watermelon (Charleston Gray)	wcgwmB197
Cla013538	Bhi10G000835	Wax gourd	wgowmB390

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013538	Cucurbita pepo (Zucchini)	cpewmB054
Cla013538	Cucurbita pepo (Zucchini)	cpewmB750
Cla013538	Cucurbita pepo (Zucchini)	cpewmB265
Cla013538	Cucurbita pepo (Zucchini)	cpewmB298
Cla013538	Cucurbita pepo (Zucchini)	cpewmB303
Cla013538	Cucurbita pepo (Zucchini)	cpewmB668
Cla013538	Cucurbita pepo (Zucchini)	cpewmB724
Cla013538	Bottle gourd (USVL1VR-Ls)	lsiwmB073
Cla013538	Bottle gourd (USVL1VR-Ls)	lsiwmB078
Cla013538	Cucumber (Gy14) v2	cgybwmB481
Cla013538	Melon (DHL92) v3.6.1	medwmB112
Cla013538	Silver-seed gourd	carwmB0030
Cla013538	Silver-seed gourd	carwmB0034
Cla013538	Silver-seed gourd	carwmB0412
Cla013538	Silver-seed gourd	carwmB0530
Cla013538	Silver-seed gourd	carwmB0719
Cla013538	Cucumber (Chinese Long) v3	cucwmB082
Cla013538	Cucumber (Chinese Long) v3	cucwmB538
Cla013538	Watermelon (97103) v2	wmwmbB339
Cla013538	Watermelon (97103) v2	wmwmbB347
Cla013538	Wax gourd	wgowmB277
Cla013538	Wax gourd	wgowmB396
Cla013538	Watermelon (97103) v1	wmwmB093
Cla013538	Watermelon (97103) v1	wmwmB109
Cla013538	Cucumber (Gy14) v1	cgywmB413
Cla013538	Cucumber (Gy14) v1	cgywmB698
Cla013538	Cucurbita maxima (Rimu)	cmawmB125
Cla013538	Cucurbita maxima (Rimu)	cmawmB500
Cla013538	Cucurbita maxima (Rimu)	cmawmB524
Cla013538	Cucurbita maxima (Rimu)	cmawmB540
Cla013538	Cucurbita maxima (Rimu)	cmawmB588
Cla013538	Cucurbita maxima (Rimu)	cmawmB593
Cla013538	Cucurbita moschata (Rifu)	cmowmB112
Cla013538	Cucurbita moschata (Rifu)	cmowmB199
Cla013538	Cucurbita moschata (Rifu)	cmowmB493
Cla013538	Cucurbita moschata (Rifu)	cmowmB513
Cla013538	Cucurbita moschata (Rifu)	cmowmB530
Cla013538	Cucurbita moschata (Rifu)	cmowmB582
Cla013538	Cucurbita moschata (Rifu)	cmowmB586
Cla013538	Melon (DHL92) v3.5.1	mewmB114
Cla013538	Watermelon (Charleston Gray)	wcgwmB245
Cla013538	Watermelon (Charleston Gray)	wcgwmB388
Cla013538	Cucumber (Chinese Long) v2	cuwmB514