ClCG02G017860 (gene) Watermelon (Charleston Gray)

NameClCG02G017860
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Descriptionglycine-rich protein LENGTH=113
LocationCG_Chr02 : 32417348 .. 32417584 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGA

mRNA sequence

ATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGA

Coding sequence (CDS)

ATGGGAAGGCCAATTCTTGTTGCCACCGGCGCTGGCTTCAGAGACGTCAACTTGGTGAGCTCCGGCGGCCTATTTTTGCTATCTGTCATCTTACTATCTATCTCTCTCATATCAATGGTCATATTTGCCTGCGGCGACTCCGGTGACCCTCAAAAGAAAAGATATAATGGCGGCGGTGGAGGTTGCGGCGGCGGAGGTTGTGGTGGTGGTGGTTGTGGGGGGTGTGGAGGAGGCTGA

Protein sequence

MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCGGG
BLAST of ClCG02G017860 vs. Swiss-Prot
Match: Y5768_DICDI (Putative uncharacterized protein DDB_G0287183 OS=Dictyostelium discoideum GN=DDB_G0287183 PE=5 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 2.6e-06
Identity = 24/54 (44.44%), Postives = 28/54 (51.85%), Query Frame = 1

Query: 25 FLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCGGG 79
          F++S   +S      +     + G+       GGGGGCGGGGCGGGG GG GGG
Sbjct: 25 FVMSASFISSETNDDICCLSKEFGNTTSSGGGGGGGGCGGGGCGGGGGGGGGGG 78


HSP 2 Score: 41.6 bits (96), Expect = 4.7e-03
Identity = 17/20 (85.00%), Postives = 15/20 (75.00%), Query Frame = 1

Query: 58 GGGGCGGGGCGGGGCGGCGG 78
          GGGGCGGGG GGGG GG GG
Sbjct: 63 GGGGCGGGGGGGGGGGGGGG 82


HSP 3 Score: 35.4 bits (80), Expect = 3.3e-01
Identity = 17/23 (73.91%), Postives = 15/23 (65.22%), Query Frame = 1

Query: 57 GGGGG--CGGGGCGGGGCGGCGG 78
          GG GG  CGGGG GGGG GG GG
Sbjct: 60 GGCGGGGCGGGGGGGGGGGGGGG 82

BLAST of ClCG02G017860 vs. TrEMBL
Match: A0A0L9TEF9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan618s000900 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 4.2e-11
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 1

Query: 1  MGRPILVATGA---GFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNG 60
          M R  +V  G    G  +  ++ S  +FL  +I+ S+S+IS++IFACGD     K+R   
Sbjct: 1  MARHFVVVDGGESNGGEEALVLHSSPIFLFLMIIASLSIISIIIFACGDDNKDTKRRRGD 60

Query: 61 GGGGCGGGGCGGGGCGGCGGG 79
          GGGG GGGG GGGG GGCGGG
Sbjct: 61 GGGGDGGGG-GGGGGGGCGGG 80

BLAST of ClCG02G017860 vs. TrEMBL
Match: A0A0L9TEF9_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan618s000900 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.2e-10
Identity = 41/93 (44.09%), Postives = 53/93 (56.99%), Query Frame = 1

Query: 1  MGRPILVATGA---GFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYN- 60
          M R  +V  G    G  +  ++ S  +FL  +I+ S+S+IS++IFACGD     K+R   
Sbjct: 1  MARHFVVVDGGESNGGEEALVLHSSPIFLFLMIIASLSIISIIIFACGDDNKDTKRRRGD 60

Query: 61 -----------GGGGGCGGGGCGGGGCGGCGGG 79
                     GGGGGCGGGG GGGGCGG GGG
Sbjct: 61 GGGGDGGGGGGGGGGGCGGGG-GGGGCGGGGGG 92


HSP 2 Score: 49.3 bits (116), Expect = 2.5e-03
Identity = 23/35 (65.71%), Postives = 23/35 (65.71%), Query Frame = 1

Query: 44  CGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCGGG 79
           CG  G        GGGGGCGGGG GGGGCGG GGG
Sbjct: 77  CGGGGGGGGCGGGGGGGGCGGGG-GGGGCGGGGGG 110


HSP 3 Score: 47.0 bits (110), Expect = 1.2e-02
Identity = 24/40 (60.00%), Postives = 24/40 (60.00%), Query Frame = 1

Query: 44  CGDSGDPQKKRYNGGGGGCGGGG----C-GGGGCGGCGGG 79
           CG  G        GGGGGCGGGG    C GGGG GGCGGG
Sbjct: 77  CGGGGGGGGCGGGGGGGGCGGGGGGGGCGGGGGGGGCGGG 116

BLAST of ClCG02G017860 vs. TAIR10
Match: AT3G14480.1 (AT3G14480.1 glycine/proline-rich protein)

HSP 1 Score: 48.1 bits (113), Expect = 2.8e-06
Identity = 27/67 (40.30%), Postives = 31/67 (46.27%), Query Frame = 1

Query: 14  RDVNLVSSGGLFLLSVILLSISLISMVI------FACGDSGDPQKKRYNGGGGGCGGGGC 73
           +D  L+ +G   L++  LL+    S           CG  G        GGGGG GGGGC
Sbjct: 116 KDRELIDTGTAMLVASSLLTSGSASSCSGGGSHGHGCGGGG-------GGGGGGLGGGGC 175

Query: 74  GGGGCGG 75
           GGGGCGG
Sbjct: 176 GGGGCGG 175

BLAST of ClCG02G017860 vs. NCBI nr
Match: gi|567908975|ref|XP_006446801.1| (hypothetical protein CICLE_v10017260mg [Citrus clementina])

HSP 1 Score: 87.4 bits (215), Expect = 1.2e-14
Identity = 47/95 (49.47%), Postives = 56/95 (58.95%), Query Frame = 1

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNG--- 60
          M R +LV   A   + N    GG+F L +++ S S+ISMVIFACGD G P+K R +G   
Sbjct: 1  MARELLVLAAAAHAESNF---GGIFSLCMVVASFSMISMVIFACGDDGSPKKNRTSGGFV 60

Query: 61 ------------GGGGC--GGGGCGGGGCGGCGGG 79
                      GGGGC  GGGGCGGGGCGG GGG
Sbjct: 61 GGGAGLGGLGGAGGGGCGGGGGGCGGGGCGGGGGG 92

BLAST of ClCG02G017860 vs. NCBI nr
Match: gi|567908975|ref|XP_006446801.1| (hypothetical protein CICLE_v10017260mg [Citrus clementina])

HSP 1 Score: 52.0 bits (123), Expect = 5.5e-04
Identity = 21/22 (95.45%), Postives = 21/22 (95.45%), Query Frame = 1

Query: 57 GGGGGCGGGGCGGGGCGGCGGG 79
          GGGGGCGGGGCGGGG GGCGGG
Sbjct: 76 GGGGGCGGGGCGGGG-GGCGGG 96


HSP 2 Score: 48.5 bits (114), Expect = 6.1e-03
Identity = 21/29 (72.41%), Postives = 21/29 (72.41%), Query Frame = 1

Query: 57  GGGGGCG-------GGGCGGGGCGGCGGG 79
           GGGGGCG       GGGCGGGGCGG GGG
Sbjct: 76  GGGGGCGGGGCGGGGGGCGGGGCGGGGGG 104


HSP 3 Score: 46.6 bits (109), Expect = 2.3e-02
Identity = 21/33 (63.64%), Postives = 21/33 (63.64%), Query Frame = 1

Query: 44  CGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCG 77
           CG  G        GGGGGCGGGGCGGGG GG G
Sbjct: 81  CGGGG------CGGGGGGCGGGGCGGGGGGGGG 107


HSP 4 Score: 42.4 bits (98), Expect = 4.4e-01
Identity = 21/34 (61.76%), Postives = 21/34 (61.76%), Query Frame = 1

Query: 44  CGDSGDPQKKRYNGGG-GGCGGGGCGGGGCGGCG 77
           CG  G        GGG GGCGGGGCGGGG GG G
Sbjct: 74  CGGGGGGCGGGGCGGGGGGCGGGGCGGGGGGGGG 107


HSP 5 Score: 87.0 bits (214), Expect = 1.5e-14
Identity = 43/82 (52.44%), Postives = 54/82 (65.85%), Query Frame = 1

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRYNGGGG 60
          M R +LV  GA   +      GG+  L +++ S+S+ISMVIFACGD  +P+K+R N GGG
Sbjct: 1  MARELLVLAGAVHAESYF---GGILFLCMVVASVSMISMVIFACGDDSNPKKRRTNYGGG 60

Query: 61 GC----GGGGCGGGGCGGCGGG 79
          GC    GGG CGGGG G CGGG
Sbjct: 61 GCGGCGGGGACGGGGGGACGGG 79

BLAST of ClCG02G017860 vs. NCBI nr
Match: gi|985434705|ref|XP_015382723.1| (PREDICTED: loricrin-like [Citrus sinensis])

HSP 1 Score: 72.8 bits (177), Expect = 3.0e-10
Identity = 44/99 (44.44%), Postives = 55/99 (55.56%), Query Frame = 1

Query: 1  MGRPILVATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKR--YNGG 60
          M R +LV  GA   +      GG+  L +++ S+S+ISMVIFACGD  +P+K+R  Y GG
Sbjct: 1  MARELLVLAGAVHAESYF---GGILFLCMVVASVSMISMVIFACGDDSNPKKRRTNYGGG 60

Query: 61 G-------------------GGCGGGGCGGGGCGGCGGG 79
          G                   GG GGGGCGGGG GG GGG
Sbjct: 61 GCGGCGGGGACGGGGGGACGGG-GGGGCGGGGGGGGGGG 95


HSP 2 Score: 46.6 bits (109), Expect = 2.3e-02
Identity = 22/36 (61.11%), Postives = 22/36 (61.11%), Query Frame = 1

Query: 43  ACGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGCGGG 79
           ACG  G        GGG G GGGG GGGG GGCGGG
Sbjct: 67  ACGGGGGGACGGGGGGGCGGGGGGGGGGGGGGCGGG 102


HSP 3 Score: 42.0 bits (97), Expect = 5.7e-01
Identity = 19/33 (57.58%), Postives = 19/33 (57.58%), Query Frame = 1

Query: 43  ACGDSGDPQKKRYNGGGGGCGGGGCGGGGCGGC 76
           ACG  G        GGGGG GGGGCGGGG   C
Sbjct: 75  ACGGGGGGGCGGGGGGGGGGGGGGCGGGGGATC 107


HSP 4 Score: 80.1 bits (196), Expect = 1.9e-12
Identity = 45/75 (60.00%), Postives = 52/75 (69.33%), Query Frame = 1

Query: 7  VATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGD--PQKKRYNGGGGGCGG 66
          V + AGF    L SS    LL +I++S+S+ISMVIFACGDSG      +R   GGGGCGG
Sbjct: 13 VHSEAGFL---LDSSEAFLLLCMIVVSLSIISMVIFACGDSGSGGGGGRRRKSGGGGCGG 72

Query: 67 GGCGGG-GCGGCGGG 79
          GGCGGG G GGCGGG
Sbjct: 73 GGCGGGDGGGGCGGG 84

BLAST of ClCG02G017860 vs. NCBI nr
Match: gi|566171168|ref|XP_006383269.1| (hypothetical protein POPTR_0005s13010g [Populus trichocarpa])

HSP 1 Score: 70.1 bits (170), Expect = 2.0e-09
Identity = 46/90 (51.11%), Postives = 55/90 (61.11%), Query Frame = 1

Query: 7  VATGAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQ---KKRYNGGGG--- 66
          V + AGF    L SS    LL +I++S+S+ISMVIFACGDSG      ++R +GGGG   
Sbjct: 13 VHSEAGFL---LDSSEAFLLLCMIVVSLSIISMVIFACGDSGSGGGGGRRRKSGGGGCGG 72

Query: 67 ----------GC-GGGGCGGG-GCGGCGGG 79
                    GC GGGGCGGG G GGCGGG
Sbjct: 73 GGCGGGDGGGGCGGGGGCGGGTGGGGCGGG 99


HSP 2 Score: 77.4 bits (189), Expect = 1.2e-11
Identity = 38/75 (50.67%), Postives = 50/75 (66.67%), Query Frame = 1

Query: 10 GAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKR------YNGGGGGCG 69
          G G     +  SG + ++ ++++SI +ISMVIFACGDS + +KK       +NGGGGGCG
Sbjct: 7  GVGDGGSAIEGSGLMIMVGMVVVSILMISMVIFACGDSSNGRKKSHWVSGGHNGGGGGCG 66

Query: 70 GGGCGGGGCGGCGGG 79
          G G GGGGCGG G G
Sbjct: 67 GDGGGGGGCGGGGDG 81

BLAST of ClCG02G017860 vs. NCBI nr
Match: gi|697095740|ref|XP_009612867.1| (PREDICTED: acanthoscurrin-1-like [Nicotiana tomentosiformis])

HSP 1 Score: 76.6 bits (187), Expect = 2.1e-11
Identity = 39/85 (45.88%), Postives = 51/85 (60.00%), Query Frame = 1

Query: 10 GAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRY-------------- 69
          G G     +  SG + ++ ++++SI +ISMVIFACGDS + +KK +              
Sbjct: 7  GVGDGGSAIEGSGLMIMVGMVVVSILMISMVIFACGDSSNGRKKSHWVSGGHNGGGGGCG 66

Query: 70 --NGGGGGCGGGGCGGGGCGGCGGG 79
             GGGGGCGGGG GGGG GGCGGG
Sbjct: 67 GDGGGGGGCGGGGDGGGGGGGCGGG 91


HSP 2 Score: 71.2 bits (173), Expect = 8.8e-10
Identity = 41/95 (43.16%), Postives = 53/95 (55.79%), Query Frame = 1

Query: 10  GAGFRDVNLVSSGGLFLLSVILLSISLISMVIFACGDSGDPQKKRY------NGGGGGCG 69
           G G     +  SG + ++ ++++SI +ISMVIFACGDS + +KK +      NGGGGGCG
Sbjct: 7   GVGDGGSAIEGSGLMIMVGMVVVSILMISMVIFACGDSSNGRKKSHWVSGGHNGGGGGCG 66

Query: 70  G-----GGC---------------GGGGCGGCGGG 79
           G     GGC               GGGG GGCGGG
Sbjct: 67  GDGGGGGGCGGGGDGGGGGGGCGGGGGGGGGCGGG 101


HSP 3 Score: 40.8 bits (94), Expect = 1.3e+00
Identity = 20/34 (58.82%), Postives = 20/34 (58.82%), Query Frame = 1

Query: 44  CGDSGDPQKKR--YNGGGGGCGGGGCGGGGCGGC 76
           CG  GD         GGGGG GG G GGGGCGGC
Sbjct: 75  CGGGGDGGGGGGGCGGGGGGGGGCGGGGGGCGGC 108


HSP 4 Score: 75.1 bits (183), Expect = 6.1e-11
Identity = 37/59 (62.71%), Postives = 45/59 (76.27%), Query Frame = 1

Query: 26 LLSVILLSISLISMVIFACGDS-GDPQKKRYN-----GGGGGCGGGGCGGGGCGGCGGG 79
          +L + L+S+S++SMVIFACGDS G   +KR+N     GGGGGCGG G GGGG GGCGGG
Sbjct: 1  MLCMFLVSMSILSMVIFACGDSDGHNARKRHNQHSGGGGGGGCGGDGGGGGGGGGCGGG 59

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Y5768_DICDI2.6e-0644.44Putative uncharacterized protein DDB_G0287183 OS=Dictyostelium discoideum GN=DDB... [more]
Match NameE-valueIdentityDescription
A0A0L9TEF9_PHAAN4.2e-1148.15Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan618s000900 PE=4 SV=1[more]
A0A0L9TEF9_PHAAN1.2e-1044.09Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan618s000900 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT3G14480.12.8e-0640.30 glycine/proline-rich protein[more]
Match NameE-valueIdentityDescription
gi|567908975|ref|XP_006446801.1|1.2e-1449.47hypothetical protein CICLE_v10017260mg [Citrus clementina][more]
gi|567908975|ref|XP_006446801.1|5.5e-0495.45hypothetical protein CICLE_v10017260mg [Citrus clementina][more]
gi|985434705|ref|XP_015382723.1|3.0e-1044.44PREDICTED: loricrin-like [Citrus sinensis][more]
gi|566171168|ref|XP_006383269.1|2.0e-0951.11hypothetical protein POPTR_0005s13010g [Populus trichocarpa][more]
gi|697095740|ref|XP_009612867.1|2.1e-1145.88PREDICTED: acanthoscurrin-1-like [Nicotiana tomentosiformis][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG02G017860.1ClCG02G017860.1mRNA


Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR35420FAMILY NOT NAMEDcoord: 2..78
score: 7.1

The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG02G017860Cla013538Watermelon (97103) v1wcgwmB197
ClCG02G017860Cla97C02G043640Watermelon (97103) v2wcgwmbB138
ClCG02G017860Bhi10G000835Wax gourdwcgwgoB292
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG02G017860Cucurbita moschata (Rifu)cmowcgB090
ClCG02G017860Cucurbita moschata (Rifu)cmowcgB182
ClCG02G017860Cucurbita moschata (Rifu)cmowcgB457
ClCG02G017860Cucurbita moschata (Rifu)cmowcgB479
ClCG02G017860Cucurbita moschata (Rifu)cmowcgB499
ClCG02G017860Cucurbita moschata (Rifu)cmowcgB533
ClCG02G017860Cucurbita moschata (Rifu)cmowcgB539
ClCG02G017860Wild cucumber (PI 183967)cpiwcgB460
ClCG02G017860Wild cucumber (PI 183967)cpiwcgB480
ClCG02G017860Cucumber (Chinese Long) v2cuwcgB439
ClCG02G017860Melon (DHL92) v3.5.1mewcgB101
ClCG02G017860Watermelon (97103) v1wcgwmB186
ClCG02G017860Watermelon (97103) v1wcgwmB188
ClCG02G017860Cucurbita pepo (Zucchini)cpewcgB230
ClCG02G017860Cucurbita pepo (Zucchini)cpewcgB263
ClCG02G017860Cucurbita pepo (Zucchini)cpewcgB266
ClCG02G017860Cucurbita pepo (Zucchini)cpewcgB592
ClCG02G017860Cucurbita pepo (Zucchini)cpewcgB645
ClCG02G017860Cucurbita pepo (Zucchini)cpewcgB668
ClCG02G017860Bottle gourd (USVL1VR-Ls)lsiwcgB051
ClCG02G017860Bottle gourd (USVL1VR-Ls)lsiwcgB054
ClCG02G017860Bottle gourd (USVL1VR-Ls)lsiwcgB181
ClCG02G017860Cucumber (Gy14) v2cgybwcgB404
ClCG02G017860Melon (DHL92) v3.6.1medwcgB098
ClCG02G017860Silver-seed gourdcarwcgB0029
ClCG02G017860Silver-seed gourdcarwcgB0033
ClCG02G017860Silver-seed gourdcarwcgB0408
ClCG02G017860Silver-seed gourdcarwcgB0516
ClCG02G017860Silver-seed gourdcarwcgB0695
ClCG02G017860Cucumber (Chinese Long) v3cucwcgB460
ClCG02G017860Watermelon (97103) v2wcgwmbB163
ClCG02G017860Wax gourdwcgwgoB270
ClCG02G017860Wax gourdwcgwgoB298
ClCG02G017860Watermelon (Charleston Gray)wcgwcgB127
ClCG02G017860Watermelon (Charleston Gray)wcgwcgB134
ClCG02G017860Cucumber (Gy14) v1cgywcgB387
ClCG02G017860Cucumber (Gy14) v1cgywcgB660
ClCG02G017860Cucurbita maxima (Rimu)cmawcgB100
ClCG02G017860Cucurbita maxima (Rimu)cmawcgB192
ClCG02G017860Cucurbita maxima (Rimu)cmawcgB458
ClCG02G017860Cucurbita maxima (Rimu)cmawcgB481
ClCG02G017860Cucurbita maxima (Rimu)cmawcgB499
ClCG02G017860Cucurbita maxima (Rimu)cmawcgB535
ClCG02G017860Cucurbita maxima (Rimu)cmawcgB542