Cla97C02G040470 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G040470
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein NIM1-INTERACTING 1-like
Location	Cla97Chr02 : 28420790 .. 28421140 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAAGAGGAAAAAAAAGAAGAAAATTGCAAGAGGAAGAAGAAGAAGAAGAGGGAAAGATGAAGTTGTTCTTTGCTTTGATTCAAAACACAAAAGCCATAAGAGACAGAATGAAATCAAAAGAATCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATAATGGAAATTACAACAACAAATCCAACATCAATCTTCAACTAGCAGCTGCTTCATCTTCAAAAACAAAACAGAGCAATGAAAAGAGAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTGACCTTAATCTCTCTCTTTGA

mRNA sequence

ATGGAAAGAGGAAAAAAAAGAAGAAAATTGCAAGAGGAAGAAGAAGAAGAAGAGGGAAAGATGAAGTTGTTCTTTGCTTTGATTCAAAACACAAAAGCCATAAGAGACAGAATGAAATCAAAAGAATCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATAATGGAAATTACAACAACAAATCCAACATCAATCTTCAACTAGCAGCTGCTTCATCTTCAAAAACAAAACAGAGCAATGAAAAGAGAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTGACCTTAATCTCTCTCTTTGA

Coding sequence (CDS)

ATGGAAAGAGGAAAAAAAAGAAGAAAATTGCAAGAGGAAGAAGAAGAAGAAGAGGGAAAGATGAAGTTGTTCTTTGCTTTGATTCAAAACACAAAAGCCATAAGAGACAGAATGAAATCAAAAGAATCAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCAAAGTTCCAACCAGAAGATTTCATTGAAGATAATGGAAATTACAACAACAAATCCAACATCAATCTTCAACTAGCAGCTGCTTCATCTTCAAAAACAAAACAGAGCAATGAAAAGAGAGAAGAACAAGAAGATAAAGACAAGGTAGGAAAAGGAAAAAATGGGCTTGACCTTAATCTCTCTCTTTGA

Protein sequence

MERGKKRRKLQEEEEEEEGKMKLFFALIQNTKAIRDRMKSKESTEEEKSKGVWNPKFQPEDFIEDNGNYNNKSNINLQLAAASSSKTKQSNEKREEQEDKDKVGKGKNGLDLNLSL

Homology

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BLAST of Cla97C02G040470 vs. NCBI nr
Match: KGN61024.1 (hypothetical protein Csa_2G034770 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 2.3e-10
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 22 KLFFALIQNTKAIRDRMK-SKESTEEEKSKGVWNPKFQPEDFIEDNG 68
          +LF+ALIQNTKA+RD MK SKE TEEEKSKGVWNPKFQPEDF E++G
Sbjct: 23 ELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQPEDFNEEDG 69

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BLAST of Cla97C02G040470 vs. NCBI nr
Match: XP_022156378.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 [Momordica charantia])

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-09
Identity = 34/42 (80.95%), Postives = 40/42 (95.24%), Query Frame = 0


Query: 25 FALIQNTKAIRDRMKSKEST-EEEKSKGVWNPKFQPEDFIED 66
          FALIQNTK+IRDR+KSK+S  +++KSKGVWNPKFQPEDFIED
Sbjct: 32 FALIQNTKSIRDRVKSKQSAPQQDKSKGVWNPKFQPEDFIED 73

[Close]

BLAST of Cla97C02G040470 vs. NCBI nr
Match: RDX69522.1 (hypothetical protein CR513_51353, partial [Mucuna pruriens])

HSP 1 Score: 57.0 bits (136), Expect = 4.9e-05
Identity = 29/42 (69.05%), Postives = 36/42 (85.71%), Query Frame = 0


Query: 24 FFALIQNTKAIRDRMKSKESTEEEKSKGVWNPKFQPEDFIED 66
          FFALI++TK +RDR+ SKE  EEEK+KGVW P FQPEDF++D
Sbjct: 15 FFALIKSTKDVRDRL-SKEK-EEEKAKGVWKPTFQPEDFMDD 54

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BLAST of Cla97C02G040470 vs. NCBI nr
Match: XP_019427458.1 (PREDICTED: protein NIM1-INTERACTING 1 [Lupinus angustifolius] >OIV91082.1 hypothetical protein TanjilG_17042 [Lupinus angustifolius])

HSP 1 Score: 54.3 bits (129), Expect = 3.2e-04
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = 0


Query: 23 LFFALIQNTKAIRDRMKSKESTEEEKSKGVWNPKFQPEDFIED 66
          +FFAL+++TK +RDR+  ++  EEEK+KGVWNP F  EDFI+D
Sbjct: 23 MFFALVKSTKDVRDRLSKRK--EEEKAKGVWNPTFIAEDFIDD 63

[Close]

BLAST of Cla97C02G040470 vs. TrEMBL
Match: tr|A0A0A0LJ23|A0A0A0LJ23_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.5e-10
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 0


Query: 22 KLFFALIQNTKAIRDRMK-SKESTEEEKSKGVWNPKFQPEDFIEDNG 68
          +LF+ALIQNTKA+RD MK SKE TEEEKSKGVWNPKFQPEDF E++G
Sbjct: 23 ELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQPEDFNEEDG 69

The following BLAST results are available for this feature:

BLAST of Cla97C02G040470 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN61024.1	2.3e-10	80.85	hypothetical protein Csa_2G034770 [Cucumis sativus]	[more]
XP_022156378.1	4.3e-09	80.95	LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 [Momordica charantia]	[more]
RDX69522.1	4.9e-05	69.05	hypothetical protein CR513_51353, partial [Mucuna pruriens]	[more]
XP_019427458.1	3.2e-04	58.14	PREDICTED: protein NIM1-INTERACTING 1 [Lupinus angustifolius] >OIV91082.1 hypoth...	[more]

BLAST of Cla97C02G040470 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LJ23\|A0A0A0LJ23_CUCSA	1.5e-10	80.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=4 SV=1	[more]

BLAST of Cla97C02G040470 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G040470 vs. TAIR10


Match Name	E-value	Identity	Description

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Biological Process**
Term	Definition
GO:0010112	regulation of systemic acquired resistance

Vocabulary: **INTERPRO**
Term	Definition
IPR031425	NPR1/NH1-interacting

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010112	regulation of systemic acquired resistance
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G040470.1	Cla97C02G040470.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031425	NPR1/NH1-interacting protein	PFAM	PF15699	NPR1_interact	coord: 13..113 e-value: 4.2E-20 score: 72.3
IPR031425	NPR1/NH1-interacting protein	PANTHER	PTHR33669	FAMILY NOT NAMED	coord: 4..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 88..107
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..54
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 35..116
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 64..87

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G040470	Cla019991	Watermelon (97103) v1	wmwmbB316
Cla97C02G040470	Csa2G034770	Cucumber (Chinese Long) v2	cuwmbB118
Cla97C02G040470	ClCG02G014690	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G040470	CsaV3_2G007290	Cucumber (Chinese Long) v3	cucwmbB123

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G040470	Watermelon (97103) v2	wmbwmbB104
Cla97C02G040470	Silver-seed gourd	carwmbB0068
Cla97C02G040470	Silver-seed gourd	carwmbB0588
Cla97C02G040470	Cucumber (Gy14) v2	cgybwmbB114
Cla97C02G040470	Cucumber (Gy14) v1	cgywmbB100
Cla97C02G040470	Cucurbita maxima (Rimu)	cmawmbB363
Cla97C02G040470	Cucurbita maxima (Rimu)	cmawmbB810
Cla97C02G040470	Cucurbita moschata (Rifu)	cmowmbB347
Cla97C02G040470	Cucurbita moschata (Rifu)	cmowmbB785
Cla97C02G040470	Wild cucumber (PI 183967)	cpiwmbB120
Cla97C02G040470	Bottle gourd (USVL1VR-Ls)	lsiwmbB011
Cla97C02G040470	Bottle gourd (USVL1VR-Ls)	lsiwmbB087
Cla97C02G040470	Melon (DHL92) v3.6.1	medwmbB228
Cla97C02G040470	Melon (DHL92) v3.6.1	medwmbB367
Cla97C02G040470	Melon (DHL92) v3.5.1	mewmbB242
Cla97C02G040470	Melon (DHL92) v3.5.1	mewmbB376
Cla97C02G040470	Watermelon (Charleston Gray)	wcgwmbB261
Cla97C02G040470	Wax gourd	wgowmbB130