CsaV3_2G007290 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_2G007290
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr2 : 3678620 .. 3679808 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAAGTGTGGAAACAAACAAAATTGCTCTCTTATCTTTTCTTCATTATCCAAATTAAATAGCATATCATGATGAAGCTCTTCACAAATAATAAGTAAACAAAAAGATCAATCACTTTTGATCATCTCTTCAAATATCATACATCTCTGTTTTTGCAATTCTCTCTCTAATCCATATCTCACCATTGGAACAAAAAAGCCATGGAAAGTGGAAGAAAAAGAAGAAAATTGCAAGAGGAAGAAGAAGAAGAAGAAGATGAAAAGATGGAGTTGTTCTATGCTTTGATTCAAAACACGAAGGCCATGAGAGACGGAATGAAATATTCAAAAGAATTAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCGAAGTTTCAACCAGAAGATTTCAATGAAGAAGATGGTTATAATTACAACAACAAATCCAACATCATTCCTCTTCAATTATCAGCTGCTTCATCTTCAACAACAAAACAATTCAATGAAAAGAAACAACAAGAAGAAGATAAACATTACAAGGTTGTAGAAGTAAAAAAGGGGCTTGACCTTAATCTCTCTCTTTGATTTTTCTTTTTCTTAGTTGTAATTAACAGTTTTATGATGGTTTGCATGCTTTTGATTTTTGTTGATGTGACGACCGAGTTGATAAATGTCTATGGGTGCGATCATACTAGCACTAGTACACTGGATCTCATTAGATCTCTTAAGTTAAGCGTATTTAGACAATAATAGTATTAAGTTGGGTGACCATTTAAAAAGTTCTCATGTTGCACCAAATGTACTTACGAAATCGAATCGAATATCACTCTTGGTGTGGTGTTGGGTCATACACACTGATCTGATTCTGACTATTTAAAAAGTTTATCAACCTCTAACTTTGCTGCATTATTCTTAGTGTGTTTGGGCTGAGGGGGCCATGAATTCTCTTTCCAAGATCACAATGATAGGGGTACTATCAAGTTATCTCTACAATCTTTTATTGACGATCTGAAAGAAAATCTAATCGAAAAAATCTGATGAATTGCTACGACTCAACACCCACTAAAGAAAACGTGCATGTTTACGACCTTTTTCTTCTAAATCATTCAAAGTACATTTACGCTGACTTTTCCATATTCCTATACCTCAAGTTTTACCACACATTCTTAACAATCCAAAACTTTCTACCATACAATACGGTTGTTCTTTT

mRNA sequence

ATGGAAAGTGGAAGAAAAAGAAGAAAATTGCAAGAGGAAGAAGAAGAAGAAGAAGATGAAAAGATGGAGTTGTTCTATGCTTTGATTCAAAACACGAAGGCCATGAGAGACGGAATGAAATATTCAAAAGAATTAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCGAAGTTTCAACCAGAAGATTTCAATGAAGAAGATGGTTATAATTACAACAACAAATCCAACATCATTCCTCTTCAATTATCAGCTGCTTCATCTTCAACAACAAAACAATTCAATGAAAAGAAACAACAAGAAGAAGATAAACATTACAAGGTTGTAGAAGTAAAAAAGGGGCTTGACCTTAATCTCTCTCTTTGA

Coding sequence (CDS)

ATGGAAAGTGGAAGAAAAAGAAGAAAATTGCAAGAGGAAGAAGAAGAAGAAGAAGATGAAAAGATGGAGTTGTTCTATGCTTTGATTCAAAACACGAAGGCCATGAGAGACGGAATGAAATATTCAAAAGAATTAACAGAAGAAGAGAAATCAAAAGGGGTTTGGAATCCGAAGTTTCAACCAGAAGATTTCAATGAAGAAGATGGTTATAATTACAACAACAAATCCAACATCATTCCTCTTCAATTATCAGCTGCTTCATCTTCAACAACAAAACAATTCAATGAAAAGAAACAACAAGAAGAAGATAAACATTACAAGGTTGTAGAAGTAAAAAAGGGGCTTGACCTTAATCTCTCTCTTTGA

Protein sequence

MESGRKRRKLQEEEEEEEDEKMELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQPEDFNEEDGYNYNNKSNIIPLQLSAASSSTTKQFNEKKQQEEDKHYKVVEVKKGLDLNLSL
Homology
[Close]
BLAST of CsaV3_2G007290 vs. NCBI nr
Match: KGN61024.1 (hypothetical protein Csa_2G034770 [Cucumis sativus])

HSP 1 Score: 155.2 bits (391), Expect = 1.4e-34
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MESGRXXXXXXXXXXXXXXXXXELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ 60
           MESGRXXXXXXXXXXXXXXXXXELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ
Sbjct: 1   MESGRXXXXXXXXXXXXXXXXXELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ 60

Query: 61  PEDFNEEDGYNYNNKSNIIPLQLSXXXXXXXXXXXXXXXXXXXXXYKVVEVKKGLDLNLS 120
           PEDFNEEDGYNYNNKSNIIPLQLSXXXXXXXXXXXXXXXXXXXXXYKVVEVKKGLDLNLS
Sbjct: 61  PEDFNEEDGYNYNNKSNIIPLQLSXXXXXXXXXXXXXXXXXXXXXYKVVEVKKGLDLNLS 120

Query: 121 L 122
           L
Sbjct: 121 L 121

[Close]
BLAST of CsaV3_2G007290 vs. NCBI nr
Match: XP_022156378.1 (LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 [Momordica charantia])

HSP 1 Score: 59.3 bits (142), Expect = 1.0e-05
Identity = 30/55 (54.55%), Postives = 40/55 (72.73%), Query Frame = 0 

Query: 26 YALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQPEDFNEEDGYNYNNKSNIIP 81
          +ALIQNTK++RD +K  +   +++KSKGVWNPKFQPEDF E+     + KSN  P
Sbjct: 32 FALIQNTKSIRDRVKSKQSAPQQDKSKGVWNPKFQPEDFIED----CDKKSNPTP 82

[Close]
BLAST of CsaV3_2G007290 vs. TrEMBL
Match: tr|A0A0A0LJ23|A0A0A0LJ23_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 9.3e-35
Identity = 121/121 (100.00%), Postives = 121/121 (100.00%), Query Frame = 0 

Query: 1   MESGRXXXXXXXXXXXXXXXXXELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ 60
           MESGRXXXXXXXXXXXXXXXXXELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ
Sbjct: 1   MESGRXXXXXXXXXXXXXXXXXELFYALIQNTKAMRDGMKYSKELTEEEKSKGVWNPKFQ 60

Query: 61  PEDFNEEDGYNYNNKSNIIPLQLSXXXXXXXXXXXXXXXXXXXXXYKVVEVKKGLDLNLS 120
           PEDFNEEDGYNYNNKSNIIPLQLSXXXXXXXXXXXXXXXXXXXXXYKVVEVKKGLDLNLS
Sbjct: 61  PEDFNEEDGYNYNNKSNIIPLQLSXXXXXXXXXXXXXXXXXXXXXYKVVEVKKGLDLNLS 120

Query: 121 L 122
           L
Sbjct: 121 L 121

The following BLAST results are available for this feature:
BLAST of CsaV3_2G007290 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN61024.11.4e-34100.00hypothetical protein Csa_2G034770 [Cucumis sativus][more]
XP_022156378.11.0e-0554.55LOW QUALITY PROTEIN: uncharacterized protein LOC111023284 [Momordica charantia][more]
BLAST of CsaV3_2G007290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G007290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_2G007290 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LJ23|A0A0A0LJ23_CUCSA9.3e-35100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G034770 PE=4 SV=1[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0010112regulation of systemic acquired resistance
Vocabulary: INTERPRO
TermDefinition
IPR031425NPR1/NH1-interacting
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0010112 regulation of systemic acquired resistance
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_2G007290.1CsaV3_2G007290.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031425NPR1/NH1-interacting proteinPFAMPF15699NPR1_interactcoord: 14..118
e-value: 3.1E-19
score: 69.5
IPR031425NPR1/NH1-interacting proteinPANTHERPTHR33669FAMILY NOT NAMEDcoord: 4..121
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..20

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_2G007290Cla019991Watermelon (97103) v1cucwmB159
CsaV3_2G007290ClCG02G014690Watermelon (Charleston Gray)cucwcgB137
CsaV3_2G007290Cla97C02G040470Watermelon (97103) v2cucwmbB123
CsaV3_2G007290Bhi06G001359Wax gourdcucwgoB136
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_2G007290Bottle gourd (USVL1VR-Ls)cuclsiB108
CsaV3_2G007290Melon (DHL92) v3.5.1cucmeB119
CsaV3_2G007290Melon (DHL92) v3.5.1cucmeB141
CsaV3_2G007290Melon (DHL92) v3.6.1cucmedB113
CsaV3_2G007290Melon (DHL92) v3.6.1cucmedB134
CsaV3_2G007290Watermelon (97103) v2cucwmbB153
CsaV3_2G007290Silver-seed gourdcarcucB0598
CsaV3_2G007290Cucurbita maxima (Rimu)cmacucB0934
CsaV3_2G007290Cucumber (Gy14) v2cgybcucB064
CsaV3_2G007290Cucumber (Gy14) v1cgycucB097
CsaV3_2G007290Cucurbita moschata (Rifu)cmocucB0069
CsaV3_2G007290Cucurbita moschata (Rifu)cmocucB0924
CsaV3_2G007290Cucurbita pepo (Zucchini)cpecucB0115
CsaV3_2G007290Wild cucumber (PI 183967)cpicucB080