Cla97C02G038730 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G038730
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Synechocystis YCF37
Location	Cla97Chr02 : 26288806 .. 26289309 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCCACAGCAATCTCACCCGTCCTCCAACTCCTCCAACCACGATGTCGATTAAACATCACCGTCCGTGCCGCCGCAGTGAAATCGTCGCCGGAATCTCTCTCCGCTAGCAGAAATCGGCGACAGACTCTGTTGTTTCTGACGACGACGGCGATGGCGGCGGTCGTGGGGAGAGAGAATCCGTCAATGGCGGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAACTGAAGAAGGTGGAGGAGGAGGCGGAGGAGATCGTGAGAGAAGGATTCGAGGCAGCGGAGAAAGAACTTGAGACGGCGGAGCGAGGGATTGTGACGGCGGAGCAGGGGATTGTAGCGGCGGAGAGAGGGATTGAAACGGCGGAAAAAGAAATCGAAACGGCAGTAAATTTCGGAGCGCTTTCTCAGGCCGGGGCAGTCGCCGGAGCGGAGGTCGTTGGAGTTCTCGTAGCTACGTCGATCGTTAACGGTATTTTGGGTCCTGAAGGGCAGAGTTAA

mRNA sequence

ATGTCTTCCACAGCAATCTCACCCGTCCTCCAACTCCTCCAACCACGATGTCGATTAAACATCACCGTCCGTGCCGCCGCAGTGAAATCGTCGCCGGAATCTCTCTCCGCTAGCAGAAATCGGCGACAGACTCTGTTGTTTCTGACGACGACGGCGATGGCGGCGGTCGTGGGGAGAGAGAATCCGTCAATGGCGGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAACTGAAGAAGGTGGAGGAGGAGGCGGAGGAGATCGTGAGAGAAGGATTCGAGGCAGCGGAGAAAGAACTTGAGACGGCGGAGCGAGGGATTGTGACGGCGGAGCAGGGGATTGTAGCGGCGGAGAGAGGGATTGAAACGGCGGAAAAAGAAATCGAAACGGCAGTAAATTTCGGAGCGCTTTCTCAGGCCGGGGCAGTCGCCGGAGCGGAGGTCGTTGGAGTTCTCGTAGCTACGTCGATCGTTAACGGTATTTTGGGTCCTGAAGGGCAGAGTTAA

Coding sequence (CDS)

ATGTCTTCCACAGCAATCTCACCCGTCCTCCAACTCCTCCAACCACGATGTCGATTAAACATCACCGTCCGTGCCGCCGCAGTGAAATCGTCGCCGGAATCTCTCTCCGCTAGCAGAAATCGGCGACAGACTCTGTTGTTTCTGACGACGACGGCGATGGCGGCGGTCGTGGGGAGAGAGAATCCGTCAATGGCGGAGGACATTCCTCTGTTCGGGCTGAGGAAGAAACTGAAGAAGGTGGAGGAGGAGGCGGAGGAGATCGTGAGAGAAGGATTCGAGGCAGCGGAGAAAGAACTTGAGACGGCGGAGCGAGGGATTGTGACGGCGGAGCAGGGGATTGTAGCGGCGGAGAGAGGGATTGAAACGGCGGAAAAAGAAATCGAAACGGCAGTAAATTTCGGAGCGCTTTCTCAGGCCGGGGCAGTCGCCGGAGCGGAGGTCGTTGGAGTTCTCGTAGCTACGTCGATCGTTAACGGTATTTTGGGTCCTGAAGGGCAGAGTTAA

Protein sequence

MSSTAISPVLQLLQPRCRLNITVRAAAVKSSPESLSASRNRRQTLLFLTTTAMAAVVGRENPSMAEDIPLFGLRKKLKKVEEEAEEIVREGFEAAEKELETAERGIVTAEQGIVAAERGIETAEKEIETAVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS

Homology

[Close]

BLAST of Cla97C02G038730 vs. NCBI nr
Match: XP_008457854.1 (PREDICTED: uncharacterized protein LOC103497439 [Cucumis melo])

HSP 1 Score: 164.5 bits (415), Expect = 3.2e-37
Identity = 152/167 (91.02%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 1   MSSTAISPVLQLLQPRCRLNITVRAAAVKSSPESLSASRNRRQTLLFLTTTAMAAVVGRE 60
           M+STAISP LQ+L+PRCRL+ TVRAAAVK   ESLSASR RRQTLLFLT T  AAVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFLTAT--AAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS 168
           XXXXXXXXXXX+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPEGQS
Sbjct: 121 XXXXXXXXXXXSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQS 165

[Close]

BLAST of Cla97C02G038730 vs. NCBI nr
Match: XP_022158696.1 (uncharacterized protein LOC111025160 [Momordica charantia])

HSP 1 Score: 152.1 bits (383), Expect = 1.6e-33
Identity = 144/167 (86.23%), Postives = 151/167 (90.42%), Query Frame = 0


Query: 1   MSSTAISPVLQLLQPRCRLNITVRAAAVKSSPESLSASRNRRQTLLFLTTTAMAAVVGRE 60
           M+ST+ SP+LQ+L+PRCR+N TVRAA VK  PESLSA   RRQ LLF T T  AA+  RE
Sbjct: 1   MASTS-SPILQILRPRCRVNTTVRAAVVKLQPESLSAGTTRRQALLFFTAT--AAIAARE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS 168
           XXXXXXXXXX NFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS
Sbjct: 121 XXXXXXXXXXLNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS 164

[Close]

BLAST of Cla97C02G038730 vs. NCBI nr
Match: XP_004148045.1 (PREDICTED: uncharacterized protein LOC101208092 [Cucumis sativus] >KGN62038.1 hypothetical protein Csa_2G292190 [Cucumis sativus])

HSP 1 Score: 137.5 bits (345), Expect = 4.1e-29
Identity = 138/167 (82.63%), Postives = 143/167 (85.63%), Query Frame = 0


Query: 1   MSSTAISPVLQLLQPRCRLNITVRAAAVKSSPESLSASRNRRQTLLFLTTTAMAAVVGRE 60
           M+STAISP LQ+L+PRCRL+ TVRAAAVKS  ES                    AVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKSPSESXXXXXXXXXXXXXXXXXXXXAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS 168
           XXXXXXXXXXXNFGALSQAGAVAGAEVVGVL+ATSIVNGILGPEGQS
Sbjct: 121 XXXXXXXXXXXNFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQS 167

[Close]

BLAST of Cla97C02G038730 vs. NCBI nr
Match: XP_022971729.1 (uncharacterized protein LOC111470397 [Cucurbita maxima])

HSP 1 Score: 129.8 bits (325), Expect = 8.6e-27
Identity = 135/167 (80.84%), Postives = 140/167 (83.83%), Query Frame = 0


Query: 1   MSSTAISPVLQLLQPRCRLNITVRAAAVKSSPESLSASRNRRQTLLFLTTTAMAAVVGRE 60
           M+ST ISP+LQ+LQPRCRLNITVRAA+VK                         AVVGRE
Sbjct: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPXXXXXXXXXXXXXXXXXXXXXXXAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NPSMAE+IPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NPSMAENIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS 168
           XXXXXXXXXX NFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS
Sbjct: 121 XXXXXXXXXXVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS 166

[Close]

BLAST of Cla97C02G038730 vs. NCBI nr
Match: XP_022928047.1 (uncharacterized protein LOC111434949 [Cucurbita moschata] >XP_023512058.1 uncharacterized protein LOC111776892 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 134/166 (80.72%), Postives = 138/166 (83.13%), Query Frame = 0


Query: 1   MSSTAISPVLQLLQPRCRLNITVRAAAVKSSPESLSASRNRRQTLLFLTTTAMAAVVGRE 60
           M+ST ISP+LQ+LQPRCRLNITVRAA+VK                         AVVGRE
Sbjct: 1   MAST-ISPILQILQPRCRLNITVRAASVKPPXXXXXXXXXXXXXXXXXXXXXXXAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 167
           XXXXXXXXXX NFGALSQAGAVAGAEVVGVLVATSIVNGILGPE Q
Sbjct: 121 XXXXXXXXXXVNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEAQ 165

[Close]

BLAST of Cla97C02G038730 vs. TrEMBL
Match: tr|A0A1S3C6G5|A0A1S3C6G5_CUCME (uncharacterized protein LOC103497439 OS=Cucumis melo OX=3656 GN=LOC103497439 PE=4 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.1e-37
Identity = 152/167 (91.02%), Postives = 158/167 (94.61%), Query Frame = 0


Query: 1   MSSTAISPVLQLLQPRCRLNITVRAAAVKSSPESLSASRNRRQTLLFLTTTAMAAVVGRE 60
           M+STAISP LQ+L+PRCRL+ TVRAAAVK   ESLSASR RRQTLLFLT T  AAVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKPPSESLSASRTRRQTLLFLTAT--AAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS 168
           XXXXXXXXXXX+FGALSQAGAVAGAEVVGVL+ATSIVNGILGPEGQS
Sbjct: 121 XXXXXXXXXXXSFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQS 165

[Close]

BLAST of Cla97C02G038730 vs. TrEMBL
Match: tr|A0A0A0LJU7|A0A0A0LJU7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292190 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 2.7e-29
Identity = 138/167 (82.63%), Postives = 143/167 (85.63%), Query Frame = 0


Query: 1   MSSTAISPVLQLLQPRCRLNITVRAAAVKSSPESLSASRNRRQTLLFLTTTAMAAVVGRE 60
           M+STAISP LQ+L+PRCRL+ TVRAAAVKS  ES                    AVVGRE
Sbjct: 1   MASTAISPALQILRPRCRLSNTVRAAAVKSPSESXXXXXXXXXXXXXXXXXXXXAVVGRE 60

Query: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  NPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS 168
           XXXXXXXXXXXNFGALSQAGAVAGAEVVGVL+ATSIVNGILGPEGQS
Sbjct: 121 XXXXXXXXXXXNFGALSQAGAVAGAEVVGVLIATSIVNGILGPEGQS 167

[Close]

BLAST of Cla97C02G038730 vs. TrEMBL
Match: tr|A0A2N9IEZ3|A0A2N9IEZ3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50511 PE=4 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.8e-15
Identity = 110/169 (65.09%), Postives = 122/169 (72.19%), Query Frame = 0


Query: 1   MSSTAISPVLQLLQPRCRLNITVRAAAVKS--SPESLSASRNRRQTLLFLTTTAMAAVVG 60
           M+ST ISP+ Q L  R     + +A A K   +P + +   NRRQ L  L  TA  A+  
Sbjct: 1   MASTIISPLFQTLSLRRAPPTSCKAHASKPALAPRTATVISNRRQLLFLL--TASTALTS 60

Query: 61  RENPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           RE PS+AEDIPLFG RKKLKK E          XXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RELPSVAEDIPLFGFRKKLKKAE-------EEAXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQS 168
           XXXXXXXXXXXXX+FG L+QAG VAGAE VGVLVATSIVNGILGPE Q+
Sbjct: 121 XXXXXXXXXXXXXSFGGLAQAGVVAGAEFVGVLVATSIVNGILGPEAQN 160

[Close]

BLAST of Cla97C02G038730 vs. TrEMBL
Match: tr|A0A1R3INR2|A0A1R3INR2_9ROSI (Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_22180 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 6.6e-15
Identity = 109/168 (64.88%), Postives = 122/168 (72.62%), Query Frame = 0


Query: 1   MSSTAISPVLQLLQPRCRLNITVRAA--AVKSSPESLSASRNRRQTLLFLTTTAMAAVVG 60
           M+ST   PVL  L  RC  N   R +  A  S P  + +  NRRQ L FL+TT   A+  
Sbjct: 1   MASTISPPVLHSLSVRCTNNAHPRRSVKAHVSKPSPVVSLPNRRQLLFFLSTT--TALTI 60

Query: 61  RENPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           R+  S AEDIPLFG RKKLK+ E        XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RQPESHAEDIPLFGFRKKLKRAEDEAVELVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 167
           XXXXXXXXXXXX +FGAL+QAGAVA AE++GV+VATSIVNGILGPE Q
Sbjct: 121 XXXXXXXXXXXXISFGALAQAGAVAAAELLGVVVATSIVNGILGPEAQ 166

[Close]

BLAST of Cla97C02G038730 vs. TrEMBL
Match: tr|A0A1R3GFD1|A0A1R3GFD1_COCAP (Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_26262 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.5e-14
Identity = 108/168 (64.29%), Postives = 121/168 (72.02%), Query Frame = 0


Query: 1   MSSTAISPVLQLLQPRCRLNITVRAA--AVKSSPESLSASRNRRQTLLFLTTTAMAAVVG 60
           M+ST   PVL  L  RC  N   R +  A  S P  + +  NRRQ L FL+TT   A+  
Sbjct: 1   MASTISPPVLHSLSVRCTNNAHPRRSVKAHVSKPSPVVSLPNRRQLLFFLSTT--TALTI 60

Query: 61  RENPSMAEDIPLFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120
           R+  S AEDIPLFG+RKKLK+ E        XXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 61  RQPESHAEDIPLFGIRKKLKRAEDEAVELVKXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 120

Query: 121 XXXXXXXXXXXXXNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 167
           XXXXXXXXXXXX +F AL+QAGAVA AE +GV+VATSIVNGILGPE Q
Sbjct: 121 XXXXXXXXXXXXISFPALAQAGAVAAAEFLGVVVATSIVNGILGPEAQ 166

[Close]

BLAST of Cla97C02G038730 vs. TAIR10
Match: AT2G23670.1 (homolog of Synechocystis YCF37)

HSP 1 Score: 72.0 bits (175), Expect = 3.9e-13
Identity = 95/157 (60.51%), Postives = 107/157 (68.15%), Query Frame = 0


Query: 13  LQPRCRLNITVRAAAVKSSPESLSA---SRNRRQTLLFLTTTAMAAVVGRENPSMAEDIP 72
           LQ RC     V   A  S+  +LS+   +   R+ LLF + TA   V G +  SMAE+IP
Sbjct: 17  LQARCARTAHVSPRAAHSNKPALSSFSLTGASRRNLLF-SLTAATVVTGLQPASMAENIP 76

Query: 73  LFGLRKKLKKVEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 132
           LFG+RKKLKK E             XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
Sbjct: 77  LFGIRKKLKKAE-------EEAVEIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 136

Query: 133 XXNFGALSQAGAVAGAEVVGVLVATSIVNGILGPEGQ 167
           X +F  L+QAGAV  AE VGVLVATS+VNGILGPE Q
Sbjct: 137 XVSFNGLTQAGAVVAAEFVGVLVATSVVNGILGPEAQ 165

The following BLAST results are available for this feature:

BLAST of Cla97C02G038730 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008457854.1	3.2e-37	91.02	PREDICTED: uncharacterized protein LOC103497439 [Cucumis melo]	[more]
XP_022158696.1	1.6e-33	86.23	uncharacterized protein LOC111025160 [Momordica charantia]	[more]
XP_004148045.1	4.1e-29	82.63	PREDICTED: uncharacterized protein LOC101208092 [Cucumis sativus] >KGN62038.1 hy...	[more]
XP_022971729.1	8.6e-27	80.84	uncharacterized protein LOC111470397 [Cucurbita maxima]	[more]
XP_022928047.1	4.3e-26	80.72	uncharacterized protein LOC111434949 [Cucurbita moschata] >XP_023512058.1 unchar...	[more]

BLAST of Cla97C02G038730 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C6G5\|A0A1S3C6G5_CUCME	2.1e-37	91.02	uncharacterized protein LOC103497439 OS=Cucumis melo OX=3656 GN=LOC103497439 PE=...	[more]
tr\|A0A0A0LJU7\|A0A0A0LJU7_CUCSA	2.7e-29	82.63	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G292190 PE=4 SV=1	[more]
tr\|A0A2N9IEZ3\|A0A2N9IEZ3_FAGSY	3.8e-15	65.09	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS50511 PE=4 SV=1	[more]
tr\|A0A1R3INR2\|A0A1R3INR2_9ROSI	6.6e-15	64.88	Uncharacterized protein OS=Corchorus olitorius OX=93759 GN=COLO4_22180 PE=4 SV=1	[more]
tr\|A0A1R3GFD1\|A0A1R3GFD1_COCAP	5.5e-14	64.29	Uncharacterized protein OS=Corchorus capsularis OX=210143 GN=CCACVL1_26262 PE=4 ...	[more]

BLAST of Cla97C02G038730 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G038730 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G23670.1	3.9e-13	60.51	homolog of Synechocystis YCF37	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019288	isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway
biological_process	GO:0006098	pentose-phosphate shunt
biological_process	GO:0010027	thylakoid membrane organization
biological_process	GO:0008150	biological_process
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0009534	chloroplast thylakoid
cellular_component	GO:0009579	thylakoid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G038730.1	Cla97C02G038730.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 70..90
None	No IPR available	COILS	Coil	Coil	coord: 92..112
None	No IPR available	PANTHER	PTHR36734	FAMILY NOT NAMED	coord: 2..166

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G038730	Cla020164	Watermelon (97103) v1	wmwmbB316
Cla97C02G038730	Csa2G292190	Cucumber (Chinese Long) v2	cuwmbB115
Cla97C02G038730	MELO3C020917	Melon (DHL92) v3.5.1	mewmbB108
Cla97C02G038730	ClCG02G013060	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G038730	CSPI02G14590	Wild cucumber (PI 183967)	cpiwmbB117
Cla97C02G038730	Cucsa.366560	Cucumber (Gy14) v1	cgywmbB635
Cla97C02G038730	CmaCh20G011410	Cucurbita maxima (Rimu)	cmawmbB578
Cla97C02G038730	CmoCh20G011740	Cucurbita moschata (Rifu)	cmowmbB558
Cla97C02G038730	Lsi10G005940	Bottle gourd (USVL1VR-Ls)	lsiwmbB044
Cla97C02G038730	MELO3C020917.2	Melon (DHL92) v3.6.1	medwmbB101
Cla97C02G038730	Carg20930	Silver-seed gourd	carwmbB1045
Cla97C02G038730	CsaV3_2G017140	Cucumber (Chinese Long) v3	cucwmbB120
Cla97C02G038730	Bhi10G001800	Wax gourd	wgowmbB354

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G038730	Watermelon (97103) v2	wmbwmbB011
Cla97C02G038730	Silver-seed gourd	carwmbB1116
Cla97C02G038730	Cucumber (Gy14) v2	cgybwmbB110
Cla97C02G038730	Cucumber (Gy14) v2	cgybwmbB113
Cla97C02G038730	Cucumber (Gy14) v1	cgywmbB130
Cla97C02G038730	Cucurbita maxima (Rimu)	cmawmbB178
Cla97C02G038730	Cucurbita maxima (Rimu)	cmawmbB621
Cla97C02G038730	Cucurbita moschata (Rifu)	cmowmbB594
Cla97C02G038730	Cucumber (Chinese Long) v2	cuwmbB441
Cla97C02G038730	Wax gourd	wgowmbB366