Cla97C02G036940 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G036940
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Transforming growth factor beta receptor type 3
Location	Cla97Chr02 : 22798851 .. 22801051 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGCGCCAACAGTAGCCACCGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGGTGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGGTCACTACAAAGCCTAAACATGTCAACTAATTAAACTATTTTAGTTTCTAGCATGTTTGAGAATGTTTGTCATGTTAAAAAATATTCTAAACATAGTTTTAATGATTAAAAGCAAGTGTTAGAGTGATTTTTCGCATAATCAAAGTCATTTTAACTATTTTAAAATTACTCTAAACCATATCTAAAACACTATCTTTGTATTTGTCTCAAAGCTATGCTTGTTTTAGTTTCCTCCATCTAAAATTGATTCATAGTTAAAAATCCACAAACAATTCAACAGGTTGATTATTTTCTTGATGCAAGATTGTCATTCTTTATTTTGTATCATTCTATACAAAAAGGATAAAACCTTGCCAAAGAAAATAAACACAAAAAGTTTGAGTTTTGTTTCAAAATAGGTTTTTGTAAAAGTTGATTACTCTCCCCTGTACAAAGGTATATTCATACCTCATTTTTATGCTTAATACCGACTTTGACTCTTTAATCAAGTTACAAAATACCTCAAAACCAATTCTTATGAGTTATGTGCAATATTACATGGTAAAGTTTAGGACTGTTATTAAATATAGCAAAATCAGTTAAACTATTTACAAATATAAAAAATTTTCACTGTTTATCAGTTATAAACTCCTATCGCTGATAAACAACCAAAATTTTCTATATTTGTAAATATTTTGATTTTTTTTTATTTATAATAAATTTTTAAGATTCATGTTACCAGCACTATTTCTTTTAAATCATACTTAAATTCAGTCCAAATTTTAATTTCAAAACAAAGGAAAAAAAAAAGTGTACAATAATTAAATCGAAACATCAGATTAGATATAAAACTAAAATTGAAAAATCAGTGACATTTTGTTAGATTTTTGTAGGACCATAATATCATGTGCTCTTCACTACAGCCTCTAGGACGTTAATGTGTTATTATCATAATTTGGCCCAAATCATTAAATATCTTTGATTCATTTAAATCAATTATAAACCATGTAGGGCTTCTATGTGAACTTTGTAGGGAAATTACAAATAAGTTTAAATATTAAAGAAATAACCATTACAAAAACATATAAATCATAAAATATATTAATGTTCAATAATTATTAAAAATCACAAATAATATTCTAGTATAATAAGTTAAAAAACACTTTTCCTCCTATAAAAAGTTATAGGAGTAATAATTTAGTATACTTTTAATTTGTATCGATTTTGTCTTGAACTTTAGTGAATTTAGTGTGCGTAACCATTTTTAGTCTAATATGCAACGATTTATTCTTATTGTATAGTTATGGTTAAGATTTGTTAGAATTTCTTACCTAGGTATAAATTAATAAAAAAAATTAGGGACCAATACGTCTATAATTTTTATAATTTTTTATAAAATTTAAAATCAATAAATGGTAAAAAAAATTTGATATTTAATTTTGATGAAATTTTGTACGAAATAAATAAAATTGTTATAAATTTGAAAGTATATAGATTAAATACTTAATAAATCAAAATTTAAGTACTAAATTTTAGGTAAATTAAAGTTAGGGCCAAAATTGAATTCTAGTCTCTTATTTATTTATTTATTTTAATCACATTTTGTATACAAGGAGACTAAATTTTAGGTCCATCAAAGTTAGGGACAAAAAGTTAACTATTTAATCCACTTATTATTATTATTATTATTATTATTATTATTATTATTATTATTTTTCCTTTTTAAACTATGAGTGAATTTGATGCTTACACAATAAGCTAAAAATAAGGAAAGAATAAGATAAAATAAGATAAGATTCAACCTAATTTGTTTGGAATTTGAAAAAACTCATATTTCTTCTCCATTATAGAGTCGAGATCCATGCGTAGACGACCGCGAACAGTGTAGAACTCACCAACAGCTGGACATGACCTTACGGTTGGCGGACAACTAG

mRNA sequence

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGCGCCAACAGTAGCCACCGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGGTGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGAGTCGAGATCCATGCGTAGACGACCGCGAACAGTGTAGAACTCACCAACAGCTGGACATGACCTTACGGTTGGCGGACAACTAG

Coding sequence (CDS)

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGCGCCAACAGTAGCCACCGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGGTGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGAGTCGAGATCCATGCGTAGACGACCGCGAACAGTGTAGAACTCACCAACAGCTGGACATGACCTTACGGTTGGCGGACAACTAG

Protein sequence

MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIRSRDPCVDDREQCRTHQQLDMTLRLADN

Homology

[Close]

BLAST of Cla97C02G036940 vs. NCBI nr
Match: XP_023532519.1 (uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 136.3 bits (342), Expect = 6.8e-29
Identity = 72/95 (75.79%), Postives = 79/95 (83.16%), Query Frame = 0


Query: 3   AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAI 62
           AVVR GL+C++L GM L QLTAA+ AEAPTVATAMPFFGA  G E E+  Q GVA GP I
Sbjct: 15  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFGAEIGMEMEMENQQGVAAGPEI 74

Query: 63  RRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
           RRLGKHH HTS+ GGGVL+GGLATAVFAVVFCYIR
Sbjct: 75  RRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIR 109

[Close]

BLAST of Cla97C02G036940 vs. NCBI nr
Match: XP_022947872.1 (uncharacterized protein LOC111451632 [Cucurbita moschata])

HSP 1 Score: 135.6 bits (340), Expect = 1.2e-28
Identity = 73/95 (76.84%), Postives = 80/95 (84.21%), Query Frame = 0


Query: 3  AVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEI-RQPGVAEGPAI 62
          AVVR GL+C++L GM L QLTAA+ AEAPTVATAMPFFG   GKE E+  QPGVA GP I
Sbjct: 2  AVVRHGLLCLVLVGMWLSQLTAASTAEAPTVATAMPFFG-EIGKEVEMENQPGVAAGPEI 61

Query: 63 RRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          RRLGKHH HTS+ GGGVL+GGLATAVFAVVFCYIR
Sbjct: 62 RRLGKHHLHTSMAGGGVLLGGLATAVFAVVFCYIR 95

[Close]

BLAST of Cla97C02G036940 vs. NCBI nr
Match: KGN46704.1 (hypothetical protein Csa_6G124190 [Cucumis sativus])

HSP 1 Score: 135.2 bits (339), Expect = 1.5e-28
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPA 60
          MAAVVRL LM ++LAGM  IQLTAANV EAP V TA+ FFG+  GKEE ++ P VAEGPA
Sbjct: 1  MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKEEAVQGPVVAEGPA 60

Query: 61 IRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          IRRLGKHHFHTS+ GG VLIG LATAVFA+VFCYIR
Sbjct: 61 IRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIR 95

[Close]

BLAST of Cla97C02G036940 vs. NCBI nr
Match: CAN69916.1 (hypothetical protein VITISV_044272 [Vitis vinifera])

HSP 1 Score: 75.1 bits (183), Expect = 1.9e-10
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 6  RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLG 65
          RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE PA RRLG
Sbjct: 3  RLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLE--VAEAPANRRLG 62

Query: 66 KHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          KHH   SI GGGV+IGGLATA+FA VFCYIR
Sbjct: 63 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIR 91

[Close]

BLAST of Cla97C02G036940 vs. NCBI nr
Match: KGN43559.1 (hypothetical protein Csa_7G045480 [Cucumis sativus])

HSP 1 Score: 73.2 bits (178), Expect = 7.1e-10
Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 9  LMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPG-VAEGPAIRRLGKH 68
          L C+++  + LIQ    ++A      T +P   A    E+  R+   VAE P IRRLGKH
Sbjct: 7  LFCLIVGEIFLIQAITTSIA----TTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKH 66

Query: 69 HFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          H   S+ GGGV+IGGL TAVFA VFCYIR
Sbjct: 67 HGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

[Close]

BLAST of Cla97C02G036940 vs. TrEMBL
Match: tr|A0A0A0KCY0|A0A0A0KCY0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 1.0e-28
Identity = 72/96 (75.00%), Postives = 80/96 (83.33%), Query Frame = 0


Query: 1  MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPA 60
          MAAVVRL LM ++LAGM  IQLTAANV EAP V TA+ FFG+  GKEE ++ P VAEGPA
Sbjct: 1  MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKEEAVQGPVVAEGPA 60

Query: 61 IRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          IRRLGKHHFHTS+ GG VLIG LATAVFA+VFCYIR
Sbjct: 61 IRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIR 95

[Close]

BLAST of Cla97C02G036940 vs. TrEMBL
Match: tr|A5BAN6|A5BAN6_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 1.2e-10
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 6  RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLG 65
          RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE PA RRLG
Sbjct: 3  RLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLE--VAEAPANRRLG 62

Query: 66 KHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          KHH   SI GGGV+IGGLATA+FA VFCYIR
Sbjct: 63 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIR 91

[Close]

BLAST of Cla97C02G036940 vs. TrEMBL
Match: tr|F6GXP2|F6GXP2_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0134g00170 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 2.1e-10
Identity = 46/91 (50.55%), Postives = 56/91 (61.54%), Query Frame = 0


Query: 6  RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLG 65
          RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE PA RRLG
Sbjct: 3  RLILVCLLLAEILVVQALAGGSGVDPLGSVVRVADQPSPGGGGESLE--VAEAPANRRLG 62

Query: 66 KHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          KHH   SI GGGV+IGGLATA+FA VFCYIR
Sbjct: 63 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIR 91

[Close]

BLAST of Cla97C02G036940 vs. TrEMBL
Match: tr|A0A2N9IXN3|A0A2N9IXN3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 3.6e-10
Identity = 48/116 (41.38%), Postives = 59/116 (50.86%), Query Frame = 0


Query: 6   RLGLMCMLLAGMLLIQLTA-------------------------ANVAEAPTVATAMPFF 65
           RLGL C++LA +L++Q  A                         A VA+ P  + A    
Sbjct: 3   RLGLFCLILAEILVVQAMAEKSEGSELNPFGLKAQNKNGALGVVARVADQPVSSIA---- 62

Query: 66  GANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
                  E      VAE P IRR+GKHH   S+ GGGV+IGGLATA+FAVVFCYIR
Sbjct: 63  ----ESPESKEYSDVAEAPVIRRMGKHHSDKSLAGGGVIIGGLATAIFAVVFCYIR 110

[Close]

BLAST of Cla97C02G036940 vs. TrEMBL
Match: tr|A0A0A0K3N0|A0A0A0K3N0_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 4.7e-10
Identity = 43/89 (48.31%), Postives = 54/89 (60.67%), Query Frame = 0


Query: 9  LMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPG-VAEGPAIRRLGKH 68
          L C+++  + LIQ    ++A      T +P   A    E+  R+   VAE P IRRLGKH
Sbjct: 7  LFCLIVGEIFLIQAITTSIA----TTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKH 66

Query: 69 HFHTSIPGGGVLIGGLATAVFAVVFCYIR 97
          H   S+ GGGV+IGGL TAVFA VFCYIR
Sbjct: 67 HGDKSMAGGGVIIGGLVTAVFAAVFCYIR 91

The following BLAST results are available for this feature:

BLAST of Cla97C02G036940 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_023532519.1	6.8e-29	75.79	uncharacterized protein LOC111794654 [Cucurbita pepo subsp. pepo]	[more]
XP_022947872.1	1.2e-28	76.84	uncharacterized protein LOC111451632 [Cucurbita moschata]	[more]
KGN46704.1	1.5e-28	75.00	hypothetical protein Csa_6G124190 [Cucumis sativus]	[more]
CAN69916.1	1.9e-10	50.55	hypothetical protein VITISV_044272 [Vitis vinifera]	[more]
KGN43559.1	7.1e-10	48.31	hypothetical protein Csa_7G045480 [Cucumis sativus]	[more]

BLAST of Cla97C02G036940 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KCY0\|A0A0A0KCY0_CUCSA	1.0e-28	75.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124190 PE=4 SV=1	[more]
tr\|A5BAN6\|A5BAN6_VITVI	1.2e-10	50.55	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VITISV_044272 PE=4 SV=1	[more]
tr\|F6GXP2\|F6GXP2_VITVI	2.1e-10	50.55	Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_12s0134g00170 PE=4 SV=...	[more]
tr\|A0A2N9IXN3\|A0A2N9IXN3_FAGSY	3.6e-10	41.38	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS56997 PE=4 SV=1	[more]
tr\|A0A0A0K3N0\|A0A0A0K3N0_CUCSA	4.7e-10	48.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G045480 PE=4 SV=1	[more]

BLAST of Cla97C02G036940 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G036940 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G036940.1	Cla97C02G036940.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558:SF4	F3L24.15 PROTEIN	coord: 6..96
None	No IPR available	PANTHER	PTHR34558	FAMILY NOT NAMED	coord: 6..96

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G036940	Cla001734	Watermelon (97103) v1	wmwmbB320
Cla97C02G036940	Csa6G124190	Cucumber (Chinese Long) v2	cuwmbB446
Cla97C02G036940	ClCG02G011170	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G036940	CSPI06G10110	Wild cucumber (PI 183967)	cpiwmbB455
Cla97C02G036940	Cucsa.119430	Cucumber (Gy14) v1	cgywmbB179
Cla97C02G036940	CmoCh02G001450	Cucurbita moschata (Rifu)	cmowmbB611
Cla97C02G036940	Carg13550	Silver-seed gourd	carwmbB0025
Cla97C02G036940	CsaV3_6G012600	Cucumber (Chinese Long) v3	cucwmbB464
Cla97C02G036940	Bhi10G000933	Wax gourd	wgowmbB360

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G036940	Silver-seed gourd	carwmbB0344
Cla97C02G036940	Cucumber (Gy14) v2	cgybwmbB411
Cla97C02G036940	Cucumber (Gy14) v2	cgybwmbB423
Cla97C02G036940	Cucumber (Gy14) v1	cgywmbB177
Cla97C02G036940	Cucurbita maxima (Rimu)	cmawmbB574
Cla97C02G036940	Cucurbita maxima (Rimu)	cmawmbB640
Cla97C02G036940	Cucurbita moschata (Rifu)	cmowmbB565
Cla97C02G036940	Cucumber (Chinese Long) v3	cucwmbB449
Cla97C02G036940	Cucumber (Chinese Long) v3	cucwmbB456
Cla97C02G036940	Cucumber (Chinese Long) v2	cuwmbB431
Cla97C02G036940	Cucumber (Chinese Long) v2	cuwmbB439
Cla97C02G036940	Bottle gourd (USVL1VR-Ls)	lsiwmbB048
Cla97C02G036940	Watermelon (97103) v1	wmwmbB316