ClCG02G011170 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G011170
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	F3L24.15 protein
Location	CG_Chr02 : 23134552 .. 23134869 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGCGCCAACAGTAGCCACCGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGGTGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGGTCACTACAAAGCCTAAACATGTCAACTAA

mRNA sequence

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGCGCCAACAGTAGCCACCGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGGTGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGGTCACTACAAAGCCTAAACATGTCAACTAA

Coding sequence (CDS)

ATGGCAGCTGTGGTTCGACTTGGTTTGATGTGTATGCTTCTTGCTGGGATGTTGTTGATTCAACTCACGGCTGCGAATGTCGCGGAGGCGCCAACAGTAGCCACCGCGATGCCGTTCTTCGGGGCTAACTTTGGAAAGGAGGAGGAGATTCGGCAGCCGGGAGTGGCTGAAGGTCCTGCAATCAGACGGCTGGGAAAGCATCATTTTCACACCTCCATCCCCGGCGGTGGGGTGCTCATCGGCGGCCTTGCTACTGCTGTTTTTGCTGTTGTGTTTTGCTACATAAGGGTCACTACAAAGCCTAAACATGTCAACTAA

Protein sequence

MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIRVTTKPKHVN

Homology

[Close]

BLAST of ClCG02G011170 vs. TrEMBL
Match: A0A0A0KCY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124190 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 3.3e-35
Identity = 79/105 (75.24%), Postives = 87/105 (82.86%), Query Frame = 1


Query: 1   MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPA 60
           MAAVVRL LM ++LAGM  IQLTAANV EAP V TA+ FFG+  GKEE ++ P VAEGPA
Sbjct: 1   MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKEEAVQGPVVAEGPA 60

Query: 61  IRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIRVTTKPKHVN 106
           IRRLGKHHFHTS+ GG VLIG LATAVFA+VFCYIRVT KP HVN
Sbjct: 61  IRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104

[Close]

BLAST of ClCG02G011170 vs. TrEMBL
Match: A5BAN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044272 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 2.7e-13
Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = 1


Query: 6   RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLG 65
           RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE PA RRLG
Sbjct: 3   RLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLE--VAEAPANRRLG 62

Query: 66  KHHFHTSIPGGGVLIGGLATAVFAVVFCYIRVTTK 101
           KHH   SI GGGV+IGGLATA+FA VFCYIR+T +
Sbjct: 63  KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRR 95

[Close]

BLAST of ClCG02G011170 vs. TrEMBL
Match: A0A0A0K3N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 3.6e-13
Identity = 46/93 (49.46%), Postives = 57/93 (61.29%), Query Frame = 1


Query: 9   LMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPG-VAEGPAIRRLGKH 68
           L C+++  + LIQ    ++A      T +P   A    E+  R+   VAE P IRRLGKH
Sbjct: 7   LFCLIVGEIFLIQAITTSIA----TTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKH 66

Query: 69  HFHTSIPGGGVLIGGLATAVFAVVFCYIRVTTK 101
           H   S+ GGGV+IGGL TAVFA VFCYIRVT K
Sbjct: 67  HGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRK 95

[Close]

BLAST of ClCG02G011170 vs. TrEMBL
Match: A0A067KB75_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13835 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.7e-13
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 1


Query: 3   AVVRLGLMCMLLAGMLLIQLTA-ANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAI 62
           A +RL + C++LAG+L++Q TA  +  ++P+VA   P   ++  +E        AE P I
Sbjct: 2   ARLRLVISCLILAGILIVQATADESEKKSPSVAD-QPVASSHEWEE--------AEAPEI 61

Query: 63  RRLGKHHFHT-SIPGGGVLIGGLATAVFAVVFCYIRVTTK 101
           RRLGKHH    S+ GGGV+IGGL TA+FA VFCYIRVT K
Sbjct: 62  RRLGKHHSSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRK 92

[Close]

BLAST of ClCG02G011170 vs. TrEMBL
Match: F6GXP2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0134g00170 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 6.1e-13
Identity = 47/93 (50.54%), Postives = 58/93 (62.37%), Query Frame = 1


Query: 6  RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLG 65
          RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE PA RRLG
Sbjct: 3  RLILVCLLLAEILVVQALAGGSGVDPLGSVVRVADQPSPGGGGESLE--VAEAPANRRLG 62

Query: 66 KHHFHTSIPGGGVLIGGLATAVFAVVFCYIRVT 99
          KHH   SI GGGV+IGGLATA+FA VFCYIR+T
Sbjct: 63 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRIT 93

[Close]

BLAST of ClCG02G011170 vs. TAIR10
Match: AT3G09280.1 (AT3G09280.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 5.3e-08
Identity = 38/96 (39.58%), Postives = 46/96 (47.92%), Query Frame = 1


Query: 9   LMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLGKHH 68
           ++C LL  +  +   AA  +EA   AT     G +    EE   P V+      R G HH
Sbjct: 7   VLCFLLTYVFSM---AAASSEAEPPATRK--LGRHEWPGEEAEAPEVSHLEETVRRGHHH 66

Query: 69  --FHTSIPGGGVLIGGLATAVFAVVFCYIRVTTKPK 103
                S+ GGGV++GGLAT    VVFCYIR T K K
Sbjct: 67  STVERSVAGGGVILGGLATTFLVVVFCYIRATRKHK 97

[Close]

BLAST of ClCG02G011170 vs. NCBI nr
Match: gi|700191500|gb|KGN46704.1| (hypothetical protein Csa_6G124190 [Cucumis sativus])

HSP 1 Score: 155.6 bits (392), Expect = 4.8e-35
Identity = 79/105 (75.24%), Postives = 87/105 (82.86%), Query Frame = 1


Query: 1   MAAVVRLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPA 60
           MAAVVRL LM ++LAGM  IQLTAANV EAP V TA+ FFG+  GKEE ++ P VAEGPA
Sbjct: 1   MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTAL-FFGSKIGKEEAVQGPVVAEGPA 60

Query: 61  IRRLGKHHFHTSIPGGGVLIGGLATAVFAVVFCYIRVTTKPKHVN 106
           IRRLGKHHFHTS+ GG VLIG LATAVFA+VFCYIRVT KP HVN
Sbjct: 61  IRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104

[Close]

BLAST of ClCG02G011170 vs. NCBI nr
Match: gi|147778492|emb|CAN69916.1| (hypothetical protein VITISV_044272 [Vitis vinifera])

HSP 1 Score: 82.8 bits (203), Expect = 3.9e-13
Identity = 47/95 (49.47%), Postives = 59/95 (62.11%), Query Frame = 1


Query: 6   RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLG 65
           RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE PA RRLG
Sbjct: 3   RLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLE--VAEAPANRRLG 62

Query: 66  KHHFHTSIPGGGVLIGGLATAVFAVVFCYIRVTTK 101
           KHH   SI GGGV+IGGLATA+FA VFCYIR+T +
Sbjct: 63  KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRR 95

[Close]

BLAST of ClCG02G011170 vs. NCBI nr
Match: gi|700188326|gb|KGN43559.1| (hypothetical protein Csa_7G045480 [Cucumis sativus])

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-13
Identity = 46/93 (49.46%), Postives = 57/93 (61.29%), Query Frame = 1


Query: 9   LMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPG-VAEGPAIRRLGKH 68
           L C+++  + LIQ    ++A      T +P   A    E+  R+   VAE P IRRLGKH
Sbjct: 7   LFCLIVGEIFLIQAITTSIA----TTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKH 66

Query: 69  HFHTSIPGGGVLIGGLATAVFAVVFCYIRVTTK 101
           H   S+ GGGV+IGGL TAVFA VFCYIRVT K
Sbjct: 67  HGDKSMAGGGVIIGGLVTAVFAAVFCYIRVTRK 95

[Close]

BLAST of ClCG02G011170 vs. NCBI nr
Match: gi|643722407|gb|KDP32228.1| (hypothetical protein JCGZ_13835 [Jatropha curcas])

HSP 1 Score: 82.0 bits (201), Expect = 6.7e-13
Identity = 49/100 (49.00%), Postives = 66/100 (66.00%), Query Frame = 1


Query: 3   AVVRLGLMCMLLAGMLLIQLTA-ANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAI 62
           A +RL + C++LAG+L++Q TA  +  ++P+VA   P   ++  +E        AE P I
Sbjct: 2   ARLRLVISCLILAGILIVQATADESEKKSPSVAD-QPVASSHEWEE--------AEAPEI 61

Query: 63  RRLGKHHFHT-SIPGGGVLIGGLATAVFAVVFCYIRVTTK 101
           RRLGKHH    S+ GGGV+IGGL TA+FA VFCYIRVT K
Sbjct: 62  RRLGKHHSSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRK 92

[Close]

BLAST of ClCG02G011170 vs. NCBI nr
Match: gi|731409912|ref|XP_010657366.1| (PREDICTED: uncharacterized protein LOC104880901 [Vitis vinifera])

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-13
Identity = 47/93 (50.54%), Postives = 58/93 (62.37%), Query Frame = 1


Query: 6   RLGLMCMLLAGMLLIQLTAANVAEAPTVATAMPFFGANFGKEEEIRQPGVAEGPAIRRLG 65
           RL L+C+LLA +L++Q  A      P  +        + G   E  +  VAE PA RRLG
Sbjct: 68  RLILVCLLLAEILVVQALAGGSGVDPLGSVVRVADQPSPGGGGESLE--VAEAPANRRLG 127

Query: 66  KHHFHTSIPGGGVLIGGLATAVFAVVFCYIRVT 99
           KHH   SI GGGV+IGGLATA+FA VFCYIR+T
Sbjct: 128 KHHVDRSIAGGGVIIGGLATAIFAAVFCYIRIT 158

The following BLAST results are available for this feature:

BLAST of ClCG02G011170 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCY0_CUCSA	3.3e-35	75.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124190 PE=4 SV=1	[more]
A5BAN6_VITVI	2.7e-13	49.47	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044272 PE=4 SV=1	[more]
A0A0A0K3N0_CUCSA	3.6e-13	49.46	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1	[more]
A0A067KB75_JATCU	4.7e-13	49.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13835 PE=4 SV=1	[more]
F6GXP2_VITVI	6.1e-13	50.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0134g00170 PE=4 SV=...	[more]

BLAST of ClCG02G011170 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09280.1	5.3e-08	39.58	unknown protein	[more]

BLAST of ClCG02G011170 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191500\|gb\|KGN46704.1\|	4.8e-35	75.24	hypothetical protein Csa_6G124190 [Cucumis sativus]	[more]
gi\|147778492\|emb\|CAN69916.1\|	3.9e-13	49.47	hypothetical protein VITISV_044272 [Vitis vinifera]	[more]
gi\|700188326\|gb\|KGN43559.1\|	5.1e-13	49.46	hypothetical protein Csa_7G045480 [Cucumis sativus]	[more]
gi\|643722407\|gb\|KDP32228.1\|	6.7e-13	49.00	hypothetical protein JCGZ_13835 [Jatropha curcas]	[more]
gi\|731409912\|ref\|XP_010657366.1\|	8.7e-13	50.54	PREDICTED: uncharacterized protein LOC104880901 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G011170.1	ClCG02G011170.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	FAMILY NOT NAMED	coord: 6..100 score: 5.4
None	No IPR available	PANTHER	PTHR34558:SF2	SUBFAMILY NOT NAMED	coord: 6..100 score: 5.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G011170	Csa6G124190	Cucumber (Chinese Long) v2	cuwcgB449
ClCG02G011170	Cla001734	Watermelon (97103) v1	wcgwmB200
ClCG02G011170	Cla97C02G036940	Watermelon (97103) v2	wcgwmbB138
ClCG02G011170	Bhi10G000933	Wax gourd	wcgwgoB290
ClCG02G011170	CSPI06G10110	Wild cucumber (PI 183967)	cpiwcgB470
ClCG02G011170	CmoCh02G001450	Cucurbita moschata (Rifu)	cmowcgB548
ClCG02G011170	Cp4.1LG05g14540	Cucurbita pepo (Zucchini)	cpewcgB656
ClCG02G011170	Carg13550	Silver-seed gourd	carwcgB0030
ClCG02G011170	CsaV3_6G012600	Cucumber (Chinese Long) v3	cucwcgB469

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G011170	Cucumber (Gy14) v1	cgywcgB182
ClCG02G011170	Cucurbita maxima (Rimu)	cmawcgB487
ClCG02G011170	Cucurbita maxima (Rimu)	cmawcgB553
ClCG02G011170	Cucurbita moschata (Rifu)	cmowcgB498
ClCG02G011170	Wild cucumber (PI 183967)	cpiwcgB477
ClCG02G011170	Watermelon (97103) v1	wcgwmB197
ClCG02G011170	Cucurbita pepo (Zucchini)	cpewcgB264
ClCG02G011170	Bottle gourd (USVL1VR-Ls)	lsiwcgB049
ClCG02G011170	Bottle gourd (USVL1VR-Ls)	lsiwcgB102
ClCG02G011170	Cucumber (Gy14) v2	cgybwcgB419
ClCG02G011170	Cucumber (Chinese Long) v3	cucwcgB475