CSPI06G10110 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G10110
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Transmembrane protein, putative
Location	Chr6 : 8741226 .. 8741809 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AAGAGTTCAGTTCAGCTATCAATTTCTCTCTCTATATAACCCTTTCCCATTTCATCCCGCTGTCCACTGCTAGCAGCTTTTTCCCTCTCCCAAGTTTACATTTTCAAAAGAAAAAAAATTCCAATTCCAATTCCAATTCCAATTCAGATTCAAAATCTATGGCAGCTGTGGTTCGACTTGCTTTGATGTCTCTGATTCTTGCTGGGATGTTTTTTATTCAACTAACGGCTGCGAATGTCACGGAGGCACCAATGGTAGACACTGCGTTGTTTTTCGGGTCTAAAATTGGAAAGGAAGAGGCAGTTCAAGGGCCGGTAGTGGCTGAAGGTCCTGCAATCAGAAGGCTGGGCAAGCATCATTTTCACACCTCGGTTGCCGGCGGTCGGGTGCTCATCGGTAGCCTTGCTACTGCTGTGTTTGCTATTGTGTTTTGCTACATAAGGGTGACTAGAAAGCCTAACCATGTCAACTAGTCGAACTCTTTTAGTTTCTTTTTCCACTTTTTCTTTACTGATTACGAGTACGTGTGAGAGTGATTCTTGAATGTTTTATAATCATTTTTTGTGTCATAAAGTGTTCTAAAC

mRNA sequence

ATGGCAGCTGTGGTTCGACTTGCTTTGATGTCTCTGATTCTTGCTGGGATGTTTTTTATTCAACTAACGGCTGCGAATGTCACGGAGGCACCAATGGTAGACACTGCGTTGTTTTTCGGGTCTAAAATTGGAAAGGAAGAGGCAGTTCAAGGGCCGGTAGTGGCTGAAGGTCCTGCAATCAGAAGGCTGGGCAAGCATCATTTTCACACCTCGGTTGCCGGCGGTCGGGTGCTCATCGGTAGCCTTGCTACTGCTGTGTTTGCTATTGTGTTTTGCTACATAAGGGTGACTAGAAAGCCTAACCATGTCAACTAG

Coding sequence (CDS)

ATGGCAGCTGTGGTTCGACTTGCTTTGATGTCTCTGATTCTTGCTGGGATGTTTTTTATTCAACTAACGGCTGCGAATGTCACGGAGGCACCAATGGTAGACACTGCGTTGTTTTTCGGGTCTAAAATTGGAAAGGAAGAGGCAGTTCAAGGGCCGGTAGTGGCTGAAGGTCCTGCAATCAGAAGGCTGGGCAAGCATCATTTTCACACCTCGGTTGCCGGCGGTCGGGTGCTCATCGGTAGCCTTGCTACTGCTGTGTTTGCTATTGTGTTTTGCTACATAAGGGTGACTAGAAAGCCTAACCATGTCAACTAG

Homology

[Close]

BLAST of CSPI06G10110 vs. TrEMBL
Match: A0A0A0KCY0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124190 PE=4 SV=1)

HSP 1 Score: 197.6 bits (501), Expect = 7.6e-48
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1


Query: 1   MAAVVRLALMSLILAGMFFIQLTAANVTEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60
           MAAVVRLALMSLILAGMFFIQLTAANV EAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI
Sbjct: 1   MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60

Query: 61  RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 105
           RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN
Sbjct: 61  RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104

[Close]

BLAST of CSPI06G10110 vs. TrEMBL
Match: W9R8T9_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_008734 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 50/112 (44.64%), Postives = 60/112 (53.57%), Query Frame = 1


Query: 4   VVRLALMSLILAGMFFIQLTAANVTEAPMVDTALFFGSKIGKE------------EAVQG 63
           + R+ L+ LIL G+  IQ  AA     P         S++  +            EA   
Sbjct: 1   MARIYLLGLILVGILVIQTLAAKSELNPADQVQSGARSRVADQPVSSAEERSEGKEASDD 60

Query: 64  PVVAEGPAIRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHV 104
              AE PAIRRLGKHH   S+AGG V+IG L TA+FA VFCYIRVTRK N V
Sbjct: 61  ENEAEAPAIRRLGKHHSDKSMAGGGVIIGGLVTAIFAAVFCYIRVTRKRNSV 112

[Close]

BLAST of CSPI06G10110 vs. TrEMBL
Match: A0A0A0K3N0_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 1.5e-11
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 9   LMSLILAGMFFIQLTAANVTEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAIRRLGKHHF 68
           L  LI+  +F IQ    ++  A   +  L    +  ++   +G  VAE P IRRLGKHH 
Sbjct: 7   LFCLIVGEIFLIQAITTSI--ATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHG 66

Query: 69  HTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 105
             S+AGG V+IG L TAVFA VFCYIRVTRK + V+
Sbjct: 67  DKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVD 100

[Close]

BLAST of CSPI06G10110 vs. TrEMBL
Match: A5BAN6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044272 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 6   RLALMSLILAGMFFIQLTAANVTEAPMVDTALFFG--SKIGKEEAVQGPVVAEGPAIRRL 65
           RL L+ L+LA +  +Q  A      P+          S  G  E+++   VAE PA RRL
Sbjct: 3   RLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLE---VAEAPANRRL 62

Query: 66  GKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRK 100
           GKHH   S+AGG V+IG LATA+FA VFCYIR+TR+
Sbjct: 63  GKHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRR 95

[Close]

BLAST of CSPI06G10110 vs. TrEMBL
Match: V4U997_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017232mg PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.8e-10
Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 52  PVVAEGPAIRRLGKHHFH---TSVAGGRVLIGSLATAVFAIVFCYIRVTRKPN 102
           P  AE P IRRLGKHH H    SVAGG V+IG L TA+FA VFCYIRVTRK N
Sbjct: 58  PEAAEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRN 110

[Close]

BLAST of CSPI06G10110 vs. TAIR10
Match: AT3G09280.1 (AT3G09280.1 unknown protein)

HSP 1 Score: 50.4 bits (119), Expect = 7.6e-07
Identity = 28/60 (46.67%), Postives = 34/60 (56.67%), Query Frame = 1


Query: 47  EAVQGPVVAEGPAIRRLGKHH--FHTSVAGGRVLIGSLATAVFAIVFCYIRVTR--KPNH 103
           E  + P V+      R G HH     SVAGG V++G LAT    +VFCYIR TR  KPN+
Sbjct: 41  EEAEAPEVSHLEETVRRGHHHSTVERSVAGGGVILGGLATTFLVVVFCYIRATRKHKPNY 100

[Close]

BLAST of CSPI06G10110 vs. NCBI nr
Match: gi|700191500|gb|KGN46704.1| (hypothetical protein Csa_6G124190 [Cucumis sativus])

HSP 1 Score: 197.6 bits (501), Expect = 1.1e-47
Identity = 103/104 (99.04%), Postives = 103/104 (99.04%), Query Frame = 1


Query: 1   MAAVVRLALMSLILAGMFFIQLTAANVTEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60
           MAAVVRLALMSLILAGMFFIQLTAANV EAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI
Sbjct: 1   MAAVVRLALMSLILAGMFFIQLTAANVKEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAI 60

Query: 61  RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 105
           RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN
Sbjct: 61  RRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 104

[Close]

BLAST of CSPI06G10110 vs. NCBI nr
Match: gi|703094258|ref|XP_010095197.1| (hypothetical protein L484_008734 [Morus notabilis])

HSP 1 Score: 77.4 bits (189), Expect = 1.6e-11
Identity = 50/112 (44.64%), Postives = 60/112 (53.57%), Query Frame = 1


Query: 4   VVRLALMSLILAGMFFIQLTAANVTEAPMVDTALFFGSKIGKE------------EAVQG 63
           + R+ L+ LIL G+  IQ  AA     P         S++  +            EA   
Sbjct: 1   MARIYLLGLILVGILVIQTLAAKSELNPADQVQSGARSRVADQPVSSAEERSEGKEASDD 60

Query: 64  PVVAEGPAIRRLGKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHV 104
              AE PAIRRLGKHH   S+AGG V+IG L TA+FA VFCYIRVTRK N V
Sbjct: 61  ENEAEAPAIRRLGKHHSDKSMAGGGVIIGGLVTAIFAAVFCYIRVTRKRNSV 112

[Close]

BLAST of CSPI06G10110 vs. NCBI nr
Match: gi|700188326|gb|KGN43559.1| (hypothetical protein Csa_7G045480 [Cucumis sativus])

HSP 1 Score: 77.0 bits (188), Expect = 2.1e-11
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 9   LMSLILAGMFFIQLTAANVTEAPMVDTALFFGSKIGKEEAVQGPVVAEGPAIRRLGKHHF 68
           L  LI+  +F IQ    ++  A   +  L    +  ++   +G  VAE P IRRLGKHH 
Sbjct: 7   LFCLIVGEIFLIQAITTSI--ATTTELPLSVAPESSEKGTREGSEVAEAPEIRRLGKHHG 66

Query: 69  HTSVAGGRVLIGSLATAVFAIVFCYIRVTRKPNHVN 105
             S+AGG V+IG L TAVFA VFCYIRVTRK + V+
Sbjct: 67  DKSMAGGGVIIGGLVTAVFAAVFCYIRVTRKRDGVD 100

[Close]

BLAST of CSPI06G10110 vs. NCBI nr
Match: gi|147778492|emb|CAN69916.1| (hypothetical protein VITISV_044272 [Vitis vinifera])

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-10
Identity = 45/96 (46.88%), Postives = 58/96 (60.42%), Query Frame = 1


Query: 6   RLALMSLILAGMFFIQLTAANVTEAPMVDTALFFG--SKIGKEEAVQGPVVAEGPAIRRL 65
           RL L+ L+LA +  +Q  A      P+          S  G  E+++   VAE PA RRL
Sbjct: 3   RLILVCLLLAEILVVQALAGGSGXDPLGSVVRVADQPSPGGGXESLE---VAEAPANRRL 62

Query: 66  GKHHFHTSVAGGRVLIGSLATAVFAIVFCYIRVTRK 100
           GKHH   S+AGG V+IG LATA+FA VFCYIR+TR+
Sbjct: 63  GKHHVDRSIAGGGVIIGGLATAIFAAVFCYIRITRR 95

[Close]

BLAST of CSPI06G10110 vs. NCBI nr
Match: gi|567910263|ref|XP_006447445.1| (hypothetical protein CICLE_v10017232mg [Citrus clementina])

HSP 1 Score: 72.8 bits (177), Expect = 4.1e-10
Identity = 37/53 (69.81%), Postives = 39/53 (73.58%), Query Frame = 1


Query: 52  PVVAEGPAIRRLGKHHFH---TSVAGGRVLIGSLATAVFAIVFCYIRVTRKPN 102
           P  AE P IRRLGKHH H    SVAGG V+IG L TA+FA VFCYIRVTRK N
Sbjct: 58  PEAAEAPEIRRLGKHHQHHSDKSVAGGGVIIGGLVTAIFAAVFCYIRVTRKRN 110

The following BLAST results are available for this feature:

BLAST of CSPI06G10110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G10110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KCY0_CUCSA	7.6e-48	99.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G124190 PE=4 SV=1	[more]
W9R8T9_9ROSA	1.1e-11	44.64	Uncharacterized protein OS=Morus notabilis GN=L484_008734 PE=4 SV=1	[more]
A0A0A0K3N0_CUCSA	1.5e-11	46.88	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G045480 PE=4 SV=1	[more]
A5BAN6_VITVI	2.8e-10	46.88	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_044272 PE=4 SV=1	[more]
V4U997_9ROSI	2.8e-10	69.81	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017232mg PE=4 SV=1	[more]

BLAST of CSPI06G10110 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G09280.1	7.6e-07	46.67	unknown protein	[more]

BLAST of CSPI06G10110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191500\|gb\|KGN46704.1\|	1.1e-47	99.04	hypothetical protein Csa_6G124190 [Cucumis sativus]	[more]
gi\|703094258\|ref\|XP_010095197.1\|	1.6e-11	44.64	hypothetical protein L484_008734 [Morus notabilis]	[more]
gi\|700188326\|gb\|KGN43559.1\|	2.1e-11	46.88	hypothetical protein Csa_7G045480 [Cucumis sativus]	[more]
gi\|147778492\|emb\|CAN69916.1\|	4.1e-10	46.88	hypothetical protein VITISV_044272 [Vitis vinifera]	[more]
gi\|567910263\|ref\|XP_006447445.1\|	4.1e-10	69.81	hypothetical protein CICLE_v10017232mg [Citrus clementina]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G10110.1	CSPI06G10110.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34558	FAMILY NOT NAMED	coord: 54..99 score: 1.2
None	No IPR available	PANTHER	PTHR34558:SF2	SUBFAMILY NOT NAMED	coord: 54..99 score: 1.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G10110	Cla001734	Watermelon (97103) v1	cpiwmB542
CSPI06G10110	Csa6G124190	Cucumber (Chinese Long) v2	cpicuB314
CSPI06G10110	ClCG02G011170	Watermelon (Charleston Gray)	cpiwcgB470
CSPI06G10110	CsaV3_6G012600	Cucumber (Chinese Long) v3	cpicucB364
CSPI06G10110	Cla97C02G036940	Watermelon (97103) v2	cpiwmbB455
CSPI06G10110	Bhi10G000933	Wax gourd	cpiwgoB605
CSPI06G10110	Cucsa.119430	Cucumber (Gy14) v1	cgycpiB156

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G10110	Cucurbita maxima (Rimu)	cmacpiB575
CSPI06G10110	Cucurbita moschata (Rifu)	cmocpiB564
CSPI06G10110	Melon (DHL92) v3.5.1	cpimeB419
CSPI06G10110	Melon (DHL92) v3.5.1	cpimeB438
CSPI06G10110	Melon (DHL92) v3.5.1	cpimeB442
CSPI06G10110	Watermelon (Charleston Gray)	cpiwcgB477
CSPI06G10110	Cucurbita pepo (Zucchini)	cpecpiB291
CSPI06G10110	Bottle gourd (USVL1VR-Ls)	cpilsiB425
CSPI06G10110	Bottle gourd (USVL1VR-Ls)	cpilsiB426
CSPI06G10110	Melon (DHL92) v3.6.1	cpimedB414
CSPI06G10110	Melon (DHL92) v3.6.1	cpimedB440
CSPI06G10110	Melon (DHL92) v3.6.1	cpimedB436
CSPI06G10110	Cucumber (Gy14) v2	cgybcpiB288
CSPI06G10110	Silver-seed gourd	carcpiB0384