Cla97C02G031930 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G031930
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr02 : 4972981 .. 4973307 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTATGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAACCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAA

mRNA sequence

ATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTATGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAACCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAA

Coding sequence (CDS)

ATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTATGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAACCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAA

Protein sequence

MGIFKKNMLIFVGVLVISTNLIEITKAIRSISYIGAPQGGVEVVCSPEDPRVYNLNYANQEPSEFNDVDGCRPQKDHQHNINGDGLGNMAPQSPKEDKSIVTSLPYMN

Homology

[Close]

BLAST of Cla97C02G031930 vs. NCBI nr
Match: KGN44358.1 (hypothetical protein Csa_7G269040 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 1   MGIFKKNMLIFVGVLVISTNLIEITKA-IRSISYIGAPQGGVEVVCSPEDPRVYNLNYAN 60
           M I KKNM +FVG+L+IST LIEITKA  RS++Y GAPQ GVE+VCSPEDPRV+ L+YAN
Sbjct: 1   MDITKKNMFVFVGLLLISTTLIEITKATTRSMNY-GAPQ-GVEIVCSPEDPRVFRLHYAN 60

Query: 61  QEPSEFNDVDGCRPQKDHQHNINGDGLG-NMAPQSPKEDKSIVTS 104
            E SE+N VD C   K    N+N DG   N+  QSP ++ +  TS
Sbjct: 61  DESSEYNAVDDCATLKS---NLNFDGRSQNVPAQSPSQNVAPQTS 100

[Close]

BLAST of Cla97C02G031930 vs. NCBI nr
Match: KGN44357.1 (hypothetical protein Csa_7G269030 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 4.0e-17
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1  MGIFKKNMLIFVGVLVISTNLIEITKA--IRSISYIGAPQGGVEVVCSPEDPRVYNLNYA 60
          MGI KKNML+FVGVL+IST LIEITKA   R+  Y G    GVE+VCSPEDPRV+ L+YA
Sbjct: 1  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDY-GPLDQGVEIVCSPEDPRVFKLHYA 60

Query: 61 NQEPSEFNDVDGCRPQKDHQHNINGDGLGNMAPQ 93
          N E SE+N VD C+  K  + N NG    NMAPQ
Sbjct: 61 NDESSEYNSVDDCKTLKS-KTNFNGQS-PNMAPQ 91

[Close]

BLAST of Cla97C02G031930 vs. TrEMBL
Match: tr|A0A0A0K4C8|A0A0A0K4C8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 1   MGIFKKNMLIFVGVLVISTNLIEITKA-IRSISYIGAPQGGVEVVCSPEDPRVYNLNYAN 60
           M I KKNM +FVG+L+IST LIEITKA  RS++Y GAPQ GVE+VCSPEDPRV+ L+YAN
Sbjct: 1   MDITKKNMFVFVGLLLISTTLIEITKATTRSMNY-GAPQ-GVEIVCSPEDPRVFRLHYAN 60

Query: 61  QEPSEFNDVDGCRPQKDHQHNINGDGLG-NMAPQSPKEDKSIVTS 104
            E SE+N VD C   K    N+N DG   N+  QSP ++ +  TS
Sbjct: 61  DESSEYNAVDDCATLKS---NLNFDGRSQNVPAQSPSQNVAPQTS 100

[Close]

BLAST of Cla97C02G031930 vs. TrEMBL
Match: tr|A0A0A0K7P8|A0A0A0K7P8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1  MGIFKKNMLIFVGVLVISTNLIEITKA--IRSISYIGAPQGGVEVVCSPEDPRVYNLNYA 60
          MGI KKNML+FVGVL+IST LIEITKA   R+  Y G    GVE+VCSPEDPRV+ L+YA
Sbjct: 1  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDY-GPLDQGVEIVCSPEDPRVFKLHYA 60

Query: 61 NQEPSEFNDVDGCRPQKDHQHNINGDGLGNMAPQ 93
          N E SE+N VD C+  K  + N NG    NMAPQ
Sbjct: 61 NDESSEYNSVDDCKTLKS-KTNFNGQS-PNMAPQ 91

The following BLAST results are available for this feature:

BLAST of Cla97C02G031930 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44358.1	1.1e-17	58.10	hypothetical protein Csa_7G269040 [Cucumis sativus]	[more]
KGN44357.1	4.0e-17	61.70	hypothetical protein Csa_7G269030 [Cucumis sativus]	[more]

BLAST of Cla97C02G031930 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4C8\|A0A0A0K4C8_CUCSA	7.0e-18	58.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1	[more]
tr\|A0A0A0K7P8\|A0A0A0K7P8_CUCSA	2.7e-17	61.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1	[more]

BLAST of Cla97C02G031930 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G031930 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C02G031930.1	Cla97C02G031930.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..108

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C02G031930	Csa7G269030	Cucumber (Chinese Long) v2	cuwmbB531
Cla97C02G031930	MELO3C012518	Melon (DHL92) v3.5.1	mewmbB179
Cla97C02G031930	CSPI07G11650	Wild cucumber (PI 183967)	cpiwmbB555
Cla97C02G031930	CsGy7G010900	Cucumber (Gy14) v2	cgybwmbB504
Cla97C02G031930	CsaV3_7G023600	Cucumber (Chinese Long) v3	cucwmbB551
Cla97C02G031930	Bhi05G001097	Wax gourd	wgowmbB250

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C02G031930	Watermelon (97103) v2	wmbwmbB065
Cla97C02G031930	Silver-seed gourd	carwmbB0180
Cla97C02G031930	Silver-seed gourd	carwmbB0324
Cla97C02G031930	Silver-seed gourd	carwmbB0930
Cla97C02G031930	Cucumber (Gy14) v2	cgybwmbB117
Cla97C02G031930	Cucumber (Gy14) v1	cgywmbB151
Cla97C02G031930	Cucumber (Gy14) v1	cgywmbB428
Cla97C02G031930	Cucurbita maxima (Rimu)	cmawmbB102
Cla97C02G031930	Cucurbita maxima (Rimu)	cmawmbB531
Cla97C02G031930	Cucurbita maxima (Rimu)	cmawmbB570
Cla97C02G031930	Cucurbita maxima (Rimu)	cmawmbB619
Cla97C02G031930	Cucurbita moschata (Rifu)	cmowmbB089
Cla97C02G031930	Cucurbita moschata (Rifu)	cmowmbB512
Cla97C02G031930	Cucurbita moschata (Rifu)	cmowmbB550
Cla97C02G031930	Cucurbita moschata (Rifu)	cmowmbB592
Cla97C02G031930	Wild cucumber (PI 183967)	cpiwmbB124
Cla97C02G031930	Cucumber (Chinese Long) v3	cucwmbB126
Cla97C02G031930	Cucumber (Chinese Long) v2	cuwmbB123
Cla97C02G031930	Bottle gourd (USVL1VR-Ls)	lsiwmbB056
Cla97C02G031930	Bottle gourd (USVL1VR-Ls)	lsiwmbB086
Cla97C02G031930	Melon (DHL92) v3.6.1	medwmbB165
Cla97C02G031930	Watermelon (Charleston Gray)	wcgwmbB068
Cla97C02G031930	Watermelon (Charleston Gray)	wcgwmbB138
Cla97C02G031930	Watermelon (97103) v1	wmwmbB317
Cla97C02G031930	Watermelon (97103) v1	wmwmbB367
Cla97C02G031930	Wax gourd	wgowmbB356