Cla97C02G031930.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C02G031930.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr02 : 4972981 .. 4973307 (+)
Sequence length	327

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTATGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAACCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAA

mRNA sequence

ATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTATGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAACCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAA

Coding sequence (CDS)

ATGGGTATCTTCAAGAAAAACATGTTGATTTTTGTTGGTGTTCTTGTTATTAGCACAAACCTAATTGAAATTACAAAAGCAATTAGATCCATCAGTTATATTGGAGCTCCTCAAGGTGGTGTGGAGGTTGTATGTAGTCCAGAAGATCCAAGAGTTTACAACCTGAATTATGCTAACCAAGAACCAAGTGAATTCAATGATGTTGATGGTTGCAGACCTCAAAAAGATCATCAACATAACATCAATGGTGATGGATTGGGAAATATGGCTCCTCAAAGCCCAAAAGAAGATAAAAGTATTGTTACTTCTCTACCATATATGAATTAA

Protein sequence

MGIFKKNMLIFVGVLVISTNLIEITKAIRSISYIGAPQGGVEVVCSPEDPRVYNLNYANQEPSEFNDVDGCRPQKDHQHNINGDGLGNMAPQSPKEDKSIVTSLPYMN

Homology

[Close]

BLAST of Cla97C02G031930.1 vs. NCBI nr
Match: KGN44358.1 (hypothetical protein Csa_7G269040 [Cucumis sativus])

HSP 1 Score: 99.0 bits (245), Expect = 1.1e-17
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 1   MGIFKKNMLIFVGVLVISTNLIEITKA-IRSISYIGAPQGGVEVVCSPEDPRVYNLNYAN 60
           M I KKNM +FVG+L+IST LIEITKA  RS++Y GAPQ GVE+VCSPEDPRV+ L+YAN
Sbjct: 1   MDITKKNMFVFVGLLLISTTLIEITKATTRSMNY-GAPQ-GVEIVCSPEDPRVFRLHYAN 60

Query: 61  QEPSEFNDVDGCRPQKDHQHNINGDGLG-NMAPQSPKEDKSIVTS 104
            E SE+N VD C   K    N+N DG   N+  QSP ++ +  TS
Sbjct: 61  DESSEYNAVDDCATLKS---NLNFDGRSQNVPAQSPSQNVAPQTS 100

[Close]

BLAST of Cla97C02G031930.1 vs. NCBI nr
Match: KGN44357.1 (hypothetical protein Csa_7G269030 [Cucumis sativus])

HSP 1 Score: 97.1 bits (240), Expect = 4.0e-17
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1  MGIFKKNMLIFVGVLVISTNLIEITKA--IRSISYIGAPQGGVEVVCSPEDPRVYNLNYA 60
          MGI KKNML+FVGVL+IST LIEITKA   R+  Y G    GVE+VCSPEDPRV+ L+YA
Sbjct: 1  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDY-GPLDQGVEIVCSPEDPRVFKLHYA 60

Query: 61 NQEPSEFNDVDGCRPQKDHQHNINGDGLGNMAPQ 93
          N E SE+N VD C+  K  + N NG    NMAPQ
Sbjct: 61 NDESSEYNSVDDCKTLKS-KTNFNGQS-PNMAPQ 91

[Close]

BLAST of Cla97C02G031930.1 vs. TrEMBL
Match: tr|A0A0A0K4C8|A0A0A0K4C8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1)

HSP 1 Score: 99.0 bits (245), Expect = 7.0e-18
Identity = 61/105 (58.10%), Postives = 75/105 (71.43%), Query Frame = 0


Query: 1   MGIFKKNMLIFVGVLVISTNLIEITKA-IRSISYIGAPQGGVEVVCSPEDPRVYNLNYAN 60
           M I KKNM +FVG+L+IST LIEITKA  RS++Y GAPQ GVE+VCSPEDPRV+ L+YAN
Sbjct: 1   MDITKKNMFVFVGLLLISTTLIEITKATTRSMNY-GAPQ-GVEIVCSPEDPRVFRLHYAN 60

Query: 61  QEPSEFNDVDGCRPQKDHQHNINGDGLG-NMAPQSPKEDKSIVTS 104
            E SE+N VD C   K    N+N DG   N+  QSP ++ +  TS
Sbjct: 61  DESSEYNAVDDCATLKS---NLNFDGRSQNVPAQSPSQNVAPQTS 100

[Close]

BLAST of Cla97C02G031930.1 vs. TrEMBL
Match: tr|A0A0A0K7P8|A0A0A0K7P8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 2.7e-17
Identity = 58/94 (61.70%), Postives = 67/94 (71.28%), Query Frame = 0


Query: 1  MGIFKKNMLIFVGVLVISTNLIEITKA--IRSISYIGAPQGGVEVVCSPEDPRVYNLNYA 60
          MGI KKNML+FVGVL+IST LIEITKA   R+  Y G    GVE+VCSPEDPRV+ L+YA
Sbjct: 1  MGISKKNMLVFVGVLLISTTLIEITKATTTRTRDY-GPLDQGVEIVCSPEDPRVFKLHYA 60

Query: 61 NQEPSEFNDVDGCRPQKDHQHNINGDGLGNMAPQ 93
          N E SE+N VD C+  K  + N NG    NMAPQ
Sbjct: 61 NDESSEYNSVDDCKTLKS-KTNFNGQS-PNMAPQ 91

The following BLAST results are available for this feature:

BLAST of Cla97C02G031930.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44358.1	1.1e-17	58.10	hypothetical protein Csa_7G269040 [Cucumis sativus]	[more]
KGN44357.1	4.0e-17	61.70	hypothetical protein Csa_7G269030 [Cucumis sativus]	[more]

BLAST of Cla97C02G031930.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0K4C8\|A0A0A0K4C8_CUCSA	7.0e-18	58.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269040 PE=4 SV=1	[more]
tr\|A0A0A0K7P8\|A0A0A0K7P8_CUCSA	2.7e-17	61.70	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G269030 PE=4 SV=1	[more]

BLAST of Cla97C02G031930.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C02G031930.1 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C02G031930	Cla97C02G031930	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C02G031930.1.exon.1	Cla97C02G031930.1.exon.1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C02G031930.1.CDS.1	Cla97C02G031930.1.CDS.1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C02G031930.1	Cla97C02G031930.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..108