Cla97C02G031040 (gene) Watermelon (97103) v2

NameCla97C02G031040
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptioncold shock domain-containing protein 3-like
LocationCla97Chr02 : 4002614 .. 4003636 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGTGAAATCCCAAAAGTACCCTTGGCCGTTAGACTTCCGTCGCAAATCGCACGGCGAGTTGCTCCATTCCAAGGCAGAGAAGCGGAAGAGCCCTGGCCGTCAGATCTCGTCGGAAACCACCCGCCGTCGCTGAGAATCGGACGGTCAGCATCGAATAATGTGACCCCACAAAATCACAAATGGAAAAAGCGTCGTTTACGGATGACGGGGCGCTCTTCCCGTTTCCAAGCTTTTCGATTCACAAAGTACGTTTCTTTTTTTTTTTTTTTAATAAATTTTTCTTCCTTATTATATATAAAAACCCTTTTTCTCCCAAATCTAGAGAGAGAAATTGGGTGATTAGGGTTTTGCAGTTGTTGGGTTTCTTTGTGAGAGAGAAGAAGAGATCGAGAAATGGCTGAAAGGGTTAGTGGGAAAGTGAAGTGGTTCAGTGACCAGAAAGGCTATGGCTTCATTTCTCCCAACGATGGAGGTGAAGATCTTTTCGTTCATCAGTCTTCCATCAGATCCGACGGTTTCCGAAGCCTCGGCGTTGGTGAGGATGTCGAGTTTCTGATCGAGGCTGAGTCCGATGGCCGTTCCAAGGCTGTTGATGTCACCGGCCCAGGAGAAGCTTCTGTGCAGGGAAGTCGCGGTGGTGGCGGCGGAGGTGGAGGAGGTGGTTACTCCAGCGGAGGAGGAGGTGGGTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGCGGCGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGTGGGTATGGTGGTGGGGGTTATGGAGGAGGTGGTGGGGGCGGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGAGATAGGTACGGCGGAGGCGGAGGCGGCGGTGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGGGAGTGTCCAAGCAGTGGTCGTTGA

mRNA sequence

ATGAGTGAAATCCCAAAAGTACCCTTGGCCGTTAGACTTCCGTCGCAAATCGCACGGCGAGTTGCTCCATTCCAAGGCAGAGAAGCGGAAGAGCCCTGGCCGTCAGATCTCGTCGGAAACCACCCGCCGTCGCTGAGAATCGGACGGTCAGCATCGAATAATGTGACCCCACAAAATCACAAATGGAAAAAGCGTCGTTTACGGATGACGGGGCGCTCTTCCCGTTTCCAAGCTTTTCGATTCACAAAAAGAAGAGATCGAGAAATGGCTGAAAGGGTTAGTGGGAAAGTGAAGTGGTTCAGTGACCAGAAAGGCTATGGCTTCATTTCTCCCAACGATGGAGGTGAAGATCTTTTCGTTCATCAGTCTTCCATCAGATCCGACGGTTTCCGAAGCCTCGGCGTTGGTGAGGATGTCGAGTTTCTGATCGAGGCTGAGTCCGATGGCCGTTCCAAGGCTGTTGATGTCACCGGCCCAGGAGAAGCTTCTGTGCAGGGAAGTCGCGGTGGTGGCGGCGGAGGTGGAGGAGGTGGTTACTCCAGCGGAGGAGGAGGTGGGTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGCGGCGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGTGGGTATGGTGGTGGGGGTTATGGAGGAGGTGGTGGGGGCGGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGAGATAGGTACGGCGGAGGCGGAGGCGGCGGTGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGGGAGTGTCCAAGCAGTGGTCGTTGA

Coding sequence (CDS)

ATGAGTGAAATCCCAAAAGTACCCTTGGCCGTTAGACTTCCGTCGCAAATCGCACGGCGAGTTGCTCCATTCCAAGGCAGAGAAGCGGAAGAGCCCTGGCCGTCAGATCTCGTCGGAAACCACCCGCCGTCGCTGAGAATCGGACGGTCAGCATCGAATAATGTGACCCCACAAAATCACAAATGGAAAAAGCGTCGTTTACGGATGACGGGGCGCTCTTCCCGTTTCCAAGCTTTTCGATTCACAAAAAGAAGAGATCGAGAAATGGCTGAAAGGGTTAGTGGGAAAGTGAAGTGGTTCAGTGACCAGAAAGGCTATGGCTTCATTTCTCCCAACGATGGAGGTGAAGATCTTTTCGTTCATCAGTCTTCCATCAGATCCGACGGTTTCCGAAGCCTCGGCGTTGGTGAGGATGTCGAGTTTCTGATCGAGGCTGAGTCCGATGGCCGTTCCAAGGCTGTTGATGTCACCGGCCCAGGAGAAGCTTCTGTGCAGGGAAGTCGCGGTGGTGGCGGCGGAGGTGGAGGAGGTGGTTACTCCAGCGGAGGAGGAGGTGGGTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGCGGCGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGTGGGTATGGTGGTGGGGGTTATGGAGGAGGTGGTGGGGGCGGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGAGATAGGTACGGCGGAGGCGGAGGCGGCGGTGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGGGAGTGTCCAAGCAGTGGTCGTTGA

Protein sequence

MSEIPKVPLAVRLPSQIARRVAPFQGREAEEPWPSDLVGNHPPSLRIGRSASNNVTPQNHKWKKRRLRMTGRSSRFQAFRFTKRRDREMAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGPGEASVQGSRGGGGGGGGGGYSSGGGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGYGGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGGGGNCYSCGESGHFARECPSSGR
BLAST of Cla97C02G031040 vs. NCBI nr
Match: XP_011658593.1 (PREDICTED: glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_7G010300 [Cucumis sativus])

HSP 1 Score: 159.1 bits (401), Expect = 2.4e-35
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0

Query: 89  MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 148
           M ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 149 GRSKAVDVTGPGEASVQGS 168
           GRSKAVDVTGPGEASVQGS
Sbjct: 61  GRSKAVDVTGPGEASVQGS 79

BLAST of Cla97C02G031040 vs. NCBI nr
Match: XP_022952475.1 (glycine-rich protein 2-like [Cucurbita moschata])

HSP 1 Score: 151.4 bits (381), Expect = 4.9e-33
Identity = 72/79 (91.14%), Postives = 77/79 (97.47%), Query Frame = 0

Query: 89  MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 148
           M+ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+D
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 149 GRSKAVDVTGPGEASVQGS 168
           GR KA+DVTGPGE+SVQGS
Sbjct: 61  GRCKAIDVTGPGESSVQGS 79

BLAST of Cla97C02G031040 vs. NCBI nr
Match: XP_022969511.1 (glycine-rich protein 2-like [Cucurbita maxima])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0

Query: 89  MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 148
           M+ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+D
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 149 GRSKAVDVTGPGEASVQG 167
           GR KAVDVTGPGE+SVQG
Sbjct: 61  GRCKAVDVTGPGESSVQG 78

BLAST of Cla97C02G031040 vs. NCBI nr
Match: XP_023554277.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-32
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0

Query: 89  MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 148
           M+ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+D
Sbjct: 1   MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 149 GRSKAVDVTGPGEASVQG 167
           GR KAVDVTGPGE+SVQG
Sbjct: 61  GRCKAVDVTGPGESSVQG 78

BLAST of Cla97C02G031040 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata])

HSP 1 Score: 149.8 bits (377), Expect = 1.4e-32
Identity = 72/78 (92.31%), Postives = 76/78 (97.44%), Query Frame = 0

Query: 89  MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 148
           M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+D
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 149 GRSKAVDVTGPGEASVQG 167
           GRSKAVDVTGPGE+SVQG
Sbjct: 61  GRSKAVDVTGPGESSVQG 78

BLAST of Cla97C02G031040 vs. TrEMBL
Match: tr|A0A0A0K4M5|A0A0A0K4M5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.6e-35
Identity = 78/79 (98.73%), Postives = 78/79 (98.73%), Query Frame = 0

Query: 89  MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 148
           M ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD
Sbjct: 1   MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 149 GRSKAVDVTGPGEASVQGS 168
           GRSKAVDVTGPGEASVQGS
Sbjct: 61  GRSKAVDVTGPGEASVQGS 79

BLAST of Cla97C02G031040 vs. TrEMBL
Match: tr|A0A1S3BIY4|A0A1S3BIY4_CUCME (LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC103490405 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 2.8e-29
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0

Query: 100 FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 159
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 160 GEASVQGS 168
           GEASVQGS
Sbjct: 61  GEASVQGS 68

BLAST of Cla97C02G031040 vs. TrEMBL
Match: tr|A0A2N9HCQ1|A0A2N9HCQ1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37261 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 9.2e-28
Identity = 63/80 (78.75%), Postives = 72/80 (90.00%), Query Frame = 0

Query: 89  MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 148
           MAER+SG VKWF+DQKG+GFI+PNDG EDLFVHQSSIRS+GFRSLG GE VE+ IE+ +D
Sbjct: 1   MAERLSGTVKWFNDQKGFGFITPNDGAEDLFVHQSSIRSEGFRSLGEGETVEYQIESGND 60

Query: 149 GRSKAVDVTGPGEASVQGSR 169
           GR+KAVDVTGPGE  VQGSR
Sbjct: 61  GRTKAVDVTGPGEGPVQGSR 80

BLAST of Cla97C02G031040 vs. TrEMBL
Match: tr|A0A251MYP5|A0A251MYP5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G163000 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 2.0e-27
Identity = 61/80 (76.25%), Postives = 72/80 (90.00%), Query Frame = 0

Query: 89  MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 148
           M ER+SG VKWF+DQKG+GFI+PNDGG+DLFVHQSSIR++GFR+LG GE VEF IE++SD
Sbjct: 1   MGERLSGTVKWFNDQKGFGFITPNDGGDDLFVHQSSIRTEGFRTLGDGESVEFQIESDSD 60

Query: 149 GRSKAVDVTGPGEASVQGSR 169
           GR+KAVDVTGP E  VQGSR
Sbjct: 61  GRTKAVDVTGPAEGPVQGSR 80

BLAST of Cla97C02G031040 vs. TrEMBL
Match: tr|W9QKF3|W9QKF3_9ROSA (Glycine-rich protein 2b OS=Morus notabilis OX=981085 GN=L484_024979 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 5.9e-27
Identity = 62/80 (77.50%), Postives = 71/80 (88.75%), Query Frame = 0

Query: 89  MAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 148
           M ERV+G VKWFSDQKG+GFI+PNDGG+DLFVHQSSIR+DGFRSL  GE VEF+IE++  
Sbjct: 1   MGERVTGIVKWFSDQKGFGFITPNDGGDDLFVHQSSIRTDGFRSLADGETVEFVIESDPS 60

Query: 149 GRSKAVDVTGPGEASVQGSR 169
           GR+KAVDVTGP EA VQGSR
Sbjct: 61  GRTKAVDVTGPDEAPVQGSR 80

BLAST of Cla97C02G031040 vs. Swiss-Prot
Match: sp|P27484|GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 119.4 bits (298), Expect = 6.8e-26
Identity = 56/79 (70.89%), Postives = 65/79 (82.28%), Query Frame = 0

Query: 88  EMAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAES 147
           E  +R  G VKWFSDQKG+GFI+P+DGGEDLFVHQS IRS+GFRSL  GE VEF +E+  
Sbjct: 4   ESGQRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGG 63

Query: 148 DGRSKAVDVTGPGEASVQG 167
           DGR+KAVDVTGP  A+VQG
Sbjct: 64  DGRTKAVDVTGPDGAAVQG 82

BLAST of Cla97C02G031040 vs. Swiss-Prot
Match: sp|Q41188|CSP2_ARATH (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 1.0e-21
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 86  DREMAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEA 145
           D    ER  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E 
Sbjct: 4   DNGGGERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEI 63

Query: 146 ESDGRSKAVDVTGPGEASVQGS 168
           +++ R KA+DV+GP  A VQG+
Sbjct: 64  DNNNRPKAIDVSGPDGAPVQGN 85

BLAST of Cla97C02G031040 vs. Swiss-Prot
Match: sp|Q94C69|CSP3_ARATH (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-21
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 0

Query: 88  EMAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAES 147
           + A R  GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   S
Sbjct: 6   QSAARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGS 65

Query: 148 DGRSKAVDVTGPGEASV 165
           DG++KA++VT PG  S+
Sbjct: 66  DGKTKAIEVTAPGGGSL 82

BLAST of Cla97C02G031040 vs. Swiss-Prot
Match: sp|Q38896|CSP4_ARATH (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.7e-21
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 0

Query: 91  ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGR 150
           +R  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 151 SKAVDVTGPGEASVQGS 168
            KA++V+GP  A VQG+
Sbjct: 73  PKAIEVSGPDGAPVQGN 89

BLAST of Cla97C02G031040 vs. Swiss-Prot
Match: sp|O65639|CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 1.8e-18
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 88  EMAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAES 147
           + A R +GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   S
Sbjct: 6   QSAARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGS 65

Query: 148 DGRSKAVDVTGPG 161
           DG++KAV+VT PG
Sbjct: 66  DGKTKAVNVTAPG 78

BLAST of Cla97C02G031040 vs. TAIR10
Match: AT4G38680.1 (glycine rich protein 2)

HSP 1 Score: 105.5 bits (262), Expect = 5.6e-23
Identity = 50/82 (60.98%), Postives = 62/82 (75.61%), Query Frame = 0

Query: 86  DREMAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEA 145
           D    ER  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E 
Sbjct: 4   DNGGGERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEI 63

Query: 146 ESDGRSKAVDVTGPGEASVQGS 168
           +++ R KA+DV+GP  A VQG+
Sbjct: 64  DNNNRPKAIDVSGPDGAPVQGN 85

BLAST of Cla97C02G031040 vs. TAIR10
Match: AT2G21060.1 (glycine-rich protein 2B)

HSP 1 Score: 104.8 bits (260), Expect = 9.6e-23
Identity = 48/77 (62.34%), Postives = 61/77 (79.22%), Query Frame = 0

Query: 91  ERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGR 150
           +R  G VKWF  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR
Sbjct: 13  DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 151 SKAVDVTGPGEASVQGS 168
            KA++V+GP  A VQG+
Sbjct: 73  PKAIEVSGPDGAPVQGN 89

BLAST of Cla97C02G031040 vs. TAIR10
Match: AT2G17870.1 (cold shock domain protein 3)

HSP 1 Score: 104.8 bits (260), Expect = 9.6e-23
Identity = 50/77 (64.94%), Postives = 61/77 (79.22%), Query Frame = 0

Query: 88  EMAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAES 147
           + A R  GKV WFSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   S
Sbjct: 6   QSAARSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGS 65

Query: 148 DGRSKAVDVTGPGEASV 165
           DG++KA++VT PG  S+
Sbjct: 66  DGKTKAIEVTAPGGGSL 82

BLAST of Cla97C02G031040 vs. TAIR10
Match: AT4G36020.1 (cold shock domain protein 1)

HSP 1 Score: 94.7 bits (234), Expect = 9.9e-20
Identity = 45/73 (61.64%), Postives = 57/73 (78.08%), Query Frame = 0

Query: 88  EMAERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAES 147
           + A R +GKV WF+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   S
Sbjct: 6   QSAARSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGS 65

Query: 148 DGRSKAVDVTGPG 161
           DG++KAV+VT PG
Sbjct: 66  DGKTKAVNVTAPG 78

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_011658593.12.4e-3598.73PREDICTED: glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical pro... [more]
XP_022952475.14.9e-3391.14glycine-rich protein 2-like [Cucurbita moschata][more]
XP_022969511.11.1e-3292.31glycine-rich protein 2-like [Cucurbita maxima][more]
XP_023554277.11.1e-3292.31glycine-rich protein 2-like [Cucurbita pepo subsp. pepo][more]
XP_022928350.11.4e-3292.31glycine-rich protein 2-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
tr|A0A0A0K4M5|A0A0A0K4M5_CUCSA1.6e-3598.73Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1[more]
tr|A0A1S3BIY4|A0A1S3BIY4_CUCME2.8e-29100.00LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A2N9HCQ1|A0A2N9HCQ1_FAGSY9.2e-2878.75Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37261 PE=4 SV=1[more]
tr|A0A251MYP5|A0A251MYP5_PRUPE2.0e-2776.25Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G163000 PE=4 SV=1[more]
tr|W9QKF3|W9QKF3_9ROSA5.9e-2777.50Glycine-rich protein 2b OS=Morus notabilis OX=981085 GN=L484_024979 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
sp|P27484|GRP2_NICSY6.8e-2670.89Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1[more]
sp|Q41188|CSP2_ARATH1.0e-2160.98Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1[more]
sp|Q94C69|CSP3_ARATH1.7e-2164.94Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P... [more]
sp|Q38896|CSP4_ARATH1.7e-2162.34Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P... [more]
sp|O65639|CSP1_ARATH1.8e-1861.64Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
AT4G38680.15.6e-2360.98glycine rich protein 2[more]
AT2G21060.19.6e-2362.34glycine-rich protein 2B[more]
AT2G17870.19.6e-2364.94cold shock domain protein 3[more]
AT4G36020.19.9e-2061.64cold shock domain protein 1[more]
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR036875Znf_CCHC_sf
IPR012340NA-bd_OB-fold
IPR019844Cold-shock_CS
IPR011129CSD
IPR001878Znf_CCHC
IPR002059CSP_DNA-bd
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C02G031040.1Cla97C02G031040.1mRNA


Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 95..110
score: 63.69
coord: 116..125
score: 64.04
coord: 131..149
score: 40.8
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 94..158
e-value: 2.5E-24
score: 84.8
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 93..158
e-value: 5.91637E-26
score: 97.2641
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 240..256
e-value: 1.4E-5
score: 34.5
coord: 277..293
e-value: 2.2E-5
score: 33.9
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 277..293
e-value: 2.0E-7
score: 30.7
coord: 240..254
e-value: 3.7E-7
score: 29.8
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 278..293
score: 11.285
IPR001878Zinc finger, CCHC-typePROSITEPS50158ZF_CCHCcoord: 241..254
score: 11.054
IPR011129Cold shock domainSMARTSM00357csp_8coord: 94..159
e-value: 6.1E-23
score: 92.2
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 85..169
e-value: 1.6E-28
score: 100.7
NoneNo IPR availableGENE3DG3DSA:4.10.60.10coord: 274..296
e-value: 7.8E-7
score: 30.7
coord: 237..265
e-value: 5.3E-7
score: 31.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 150..177
NoneNo IPR availablePANTHERPTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINScoord: 89..292
NoneNo IPR availablePANTHERPTHR11544:SF101COLD SHOCK DOMAIN-CONTAINING PROTEIN 3-RELATEDcoord: 89..292
IPR019844Cold-shock conserved sitePROSITEPS00352COLD_SHOCKcoord: 106..125
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 89..158
IPR036875Zinc finger, CCHC-type superfamilySUPERFAMILYSSF57756Retrovirus zinc finger-like domainscoord: 231..294

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C02G031040Wax gourdwgowmbB356
Cla97C02G031040Watermelon (97103) v2wmbwmbB089
Cla97C02G031040Watermelon (97103) v2wmbwmbB109
Cla97C02G031040Silver-seed gourdcarwmbB0144
Cla97C02G031040Silver-seed gourdcarwmbB0360
Cla97C02G031040Silver-seed gourdcarwmbB1028
Cla97C02G031040Silver-seed gourdcarwmbB1081
Cla97C02G031040Cucumber (Gy14) v2cgybwmbB117
Cla97C02G031040Cucumber (Gy14) v2cgybwmbB120
Cla97C02G031040Cucumber (Gy14) v1cgywmbB277
Cla97C02G031040Cucurbita maxima (Rimu)cmawmbB101
Cla97C02G031040Cucurbita maxima (Rimu)cmawmbB570
Cla97C02G031040Cucurbita maxima (Rimu)cmawmbB813
Cla97C02G031040Cucurbita moschata (Rifu)cmowmbB094
Cla97C02G031040Cucurbita moschata (Rifu)cmowmbB163
Cla97C02G031040Cucurbita moschata (Rifu)cmowmbB553
Cla97C02G031040Cucurbita moschata (Rifu)cmowmbB787
Cla97C02G031040Wild cucumber (PI 183967)cpiwmbB130
Cla97C02G031040Wild cucumber (PI 183967)cpiwmbB127
Cla97C02G031040Cucumber (Chinese Long) v3cucwmbB128
Cla97C02G031040Cucumber (Chinese Long) v3cucwmbB131
Cla97C02G031040Cucumber (Chinese Long) v2cuwmbB125
Cla97C02G031040Cucumber (Chinese Long) v2cuwmbB128
Cla97C02G031040Bottle gourd (USVL1VR-Ls)lsiwmbB058
Cla97C02G031040Melon (DHL92) v3.6.1medwmbB095
Cla97C02G031040Melon (DHL92) v3.6.1medwmbB273
Cla97C02G031040Melon (DHL92) v3.5.1mewmbB100
Cla97C02G031040Melon (DHL92) v3.5.1mewmbB288
Cla97C02G031040Watermelon (Charleston Gray)wcgwmbB145
Cla97C02G031040Watermelon (Charleston Gray)wcgwmbB324
Cla97C02G031040Watermelon (97103) v1wmwmbB087
Cla97C02G031040Watermelon (97103) v1wmwmbB328