Carg19359 (gene) Silver-seed gourd

Overview
NameCarg19359
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionCold shock protein
LocationCucurbita_argyrosperma_scaffold_096 : 106051 .. 108347 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AGGGATGAATTCCCAAAAGTACCCTTAGCCGTTCAGACTTCCGTCGCAAATGCCACGGTGAAATGCTCCGTTCCAAAGAAGAGAAGAGGAAGATCCCTGGCCGTCAGATCTCGTCGGAAACCGCCCGCGTCGTTGAGAATCGGACGGTCAGAATCGAAGAATATGACCCCACAAAATCTTAAATGGAAAATTACGTCGTTTACGGATGACGGGGCGGTCTTCCCGTTTCCAAGCTTTTCGATTATATATATATATATATATAAAACCCATTTCATTCTTTGAGAAATTTGGGTTATTAGGGTTTTGCAATTGTTGGGTCTGAGAGAGATCGAGAAATGAGCGAGAGGGTCAGTGGAAAGGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGAGGGAGGCGAAGATCTTTTCGTTCATCAGTCCTCCATTAGATCCGACGGTTTTCGGAGCCTCGGCGTCGGTGAGGATGTTGAGTTTCTGATCGAGCCTGAAGCCGATGGCCGTTGCAAGGCCGTTGATGTCACTGGCCCTGGAGAATCTTCTGTGCAGGGAAGTCGCGGTGGTAGCGGCGGCGGCGGTGGTGAAAGGGGGAGTCGAGGTGGTGGATATGGGTTTAATGGCGGAGGCGGAGGTGGCCGAGGTGGGTACGGCCGTGGAGGCGGAGGGTATGGTGGAGGCTATGGAGGAGGAGGCGGCGGCGGGGGTGGTTGTTTTAAGTGTGGTGAAACTGGGCATATGGCGAGAGACTGCTACCAGGGTGGATCTCAAGGTGGTGGAGATAGGTACGGCGGCGGCGGTGGCGGTGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGATTGTCAAAGCAGTGGCCGTTGATCGCTTAAATTGCTGACTATAACAACAAGACGAGGCGATTTACTTTTTTTTGCTCGAATCTGGGGGTGTTTTGTTCGATTTTCCTTTACGTTTGTAAGGTTTGATTAGCTTTTATCACGGATCACCATTAGTTTAGTATCTGTTTACTGTCTTTTGGGTATTGAATGATGTTCGTTTCATGGATTTTAGGGGTATTTTTATCAGCGATCCTTAGAAAAATAGATGATCATTGTGGGATGAACGTTCCTTGATTCTCTGTTTCTTGAACTGTTGATAGAACTATTTCGTATACAATGCCTTCTGATTTTGGATGAATGATTGAATGATCCATATCTGATATCTCTTTTCCATTTCATTTTGATTGACAAATAACTCTTTGATTGATTCAATGCAATGGGGACTCTGCTTTATTTTTTTCCTATGCAATTATTGATGGAATGAACAGAGACTGAGAAAGGGAAATGCAGGCTGGAAAGAAGTAAAGTGGTTTCACTTTTGTGGAAGAGCTGTGTGTTCATTGATTGAGATGTTTTTCCTAATTGTGAAAACAAGTGAATAGTGATTGCAAACTCGTCTGTTTCCATTACTGTTCACTAAATGCCCTTTAAACTGTTTATAGTAGTGTTCTTTATTATGCAAGATTCCATTACTTCTGGTTATGGGTTTGAATGGATTCTCAATATCATCTTGTTGATGGGAGAAGAAAATGGGATTGCTTCATTTTTATTGCAAGAGTCGCATGCTTCTTGAATCTCCCAGAGTCTCCTTGTGAGATCCCACATCGGTGGGAGAGGGGAACGAAACATTTCTTATAAGGGCGTGGAAATCTCTCCCTAGCATATGCGTTTTAGAATCGTGAGTCGTGAGGATGTTGGAGAGGGAACGAAACATTCCTTATAAGGGTGTGGAAACCTCTCTCTGGCATATGCATTTTAAGATTGTTAGGATGACGACAATACGTCATAGGCCAAAATAGACAATGTTTACTAACGGTAGGGTTGGACTGTTACAAATGGTAATAGTATTAGAGCTCGACATCGGGTAGTGTGCTAGCGAGGACACTAGGCTCCAAGGAATAGATTGTGAGATTGCACATCGGTTGAAGAGAGGTTGAAGAGAGGAATAGACACGGGGTGGTGTGCCATTGAGGACACTAGGTAGGTTCTTGCATTTTCATTTTTAGGTACCACTAAAGAAGAAGAAGAGGCCCACGCCAAAGTAAAAAGAGACTGGATAATGATAGTGTACTATTTCGGATGAACAAGAGCCACATTCCTCCCCTAGGCTGCAGTACGGTGCATAGAAAACACATCCCAATCATCCCTTAACCTCAACTATTTCATCAATGGCTACCAATATGGTGGACGTGGTGCTGATGCAGCAGCGGTGGTGGTGCAGCCGTGA

mRNA sequence

AGGGATGAATTCCCAAAAGTACCCTTAGCCGTTCAGACTTCCGTCGCAAATGCCACGGTGAAATGCTCCGTTCCAAAGAAGAGAAGAGGAAGATCCCTGGCCGTCAGATCTCGTCGGAAACCGCCCGCGTCGTTGAGAATCGGACGGTCAGAATCGAAGAATATGACCCCACAAAATCTTAAATGGAAAATTACGTCGTTTACGGATGACGGGGCGGTCTTCCCGTTTCCAAGCTTTTCGATTATATATATATATATATATAAAACCCATTTCATTCTTTGAGAAATTTGGGTTATTAGGGTTTTGCAATTGTTGGGTCTGAGAGAGATCGAGAAATGAGCGAGAGGGTCAGTGGAAAGGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGAGGGAGGCGAAGATCTTTTCGTTCATCAGTCCTCCATTAGATCCGACGGTTTTCGGAGCCTCGGCGTCGGTGAGGATGTTGAGTTTCTGATCGAGCCTGAAGCCGATGGCCGTTGCAAGGCCGTTGATGTCACTGGCCCTGGAGAATCTTCTGTGCAGGGAAGTCGCGGTGGTAGCGGCGGCGGCGGTGGTGAAAGGGGGAGTCGAGGTGGTGGATATGGGTTTAATGGCGGAGGCGGAGGTGGCCGAGGTGGGTACGGCCGTGGAGGCGGAGGGTATGGTGGAGGCTATGGAGGAGGAGGCGGCGGCGGGGGTGGTTGTTTTAAGGTGGATCTCAAGGTGGTGGAGATAGGTACGGCGGCGGCGGTGGCGGTGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGATTGTCAAAGCAGTGGCCGCTGCAGTACGGTGCATAGAAAACACATCCCAATCATCCCTTAACCTCAACTATTTCATCAATGGCTACCAATATGGTGGACGTGGTGCTGATGCAGCAGCGGTGGTGGTGCAGCCGTGA

Coding sequence (CDS)

ATGAGCGAGAGGGTCAGTGGAAAGGTGAAGTGGTTCAGTGACCAGAAGGGCTATGGCTTCATTTCTCCCAACGAGGGAGGCGAAGATCTTTTCGTTCATCAGTCCTCCATTAGATCCGACGGTTTTCGGAGCCTCGGCGTCGGTGAGGATGTTGAGTTTCTGATCGAGCCTGAAGCCGATGGCCGTTGCAAGGCCGTTGATGTCACTGGCCCTGGAGAATCTTCTGTGCAGGGAAGTCGCGGTGGTAGCGGCGGCGGCGGTGGTGAAAGGGGGAGTCGAGGTGGTGGATATGGGTTTAATGGCGGAGGCGGAGGTGGCCGAGGTGGGTACGGCCGTGGAGGCGGAGGGTATGGTGGAGGCTATGGAGGAGGAGGCGGCGGCGGGGGTGGTTGTTTTAAGGTGGATCTCAAGGTGGTGGAGATAGGTACGGCGGCGGCGGTGGCGGTGGCGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGATTGTCAAAGCAGTGGCCGCTGCAGTACGGTGCATAGAAAACACATCCCAATCATCCCTTAACCTCAACTATTTCATCAATGGCTACCAATATGGTGGACGTGGTGCTGATGCAGCAGCGGTGGTGGTGCAGCCGTGA

Protein sequence

MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRCKAVDVTGPGESSVQGSRGGSGGGGGERGSRGGGYGFNGGGGGGRGGYGRGGGGYGGGYGGGGGGGGGCFKVDLKVVEIGTAAAVAVAVETAIAVVNLGISLEIVKAVAAAVRCIENTSQSSLNLNYFINGYQYGGRGADAAAVVVQP
Homology
[Close]
BLAST of Carg19359 vs. NCBI nr
Match: XP_022952475.1 (glycine-rich protein 2-like [Cucurbita moschata])

HSP 1 Score: 164.5 bits (415), Expect = 4.0e-37
Identity = 78/79 (98.73%), Postives = 79/79 (100.00%), Query Frame = 0 

Query: 1  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
          MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD
Sbjct: 1  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61 GRCKAVDVTGPGESSVQGS 80
          GRCKA+DVTGPGESSVQGS
Sbjct: 61 GRCKAIDVTGPGESSVQGS 79

[Close]
BLAST of Carg19359 vs. NCBI nr
Match: XP_022969511.1 (glycine-rich protein 2-like [Cucurbita maxima])

HSP 1 Score: 163.3 bits (412), Expect = 8.9e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
          MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD
Sbjct: 1  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61 GRCKAVDVTGPGESSVQG 79
          GRCKAVDVTGPGESSVQG
Sbjct: 61 GRCKAVDVTGPGESSVQG 78

[Close]
BLAST of Carg19359 vs. NCBI nr
Match: XP_023554277.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 163.3 bits (412), Expect = 8.9e-37
Identity = 78/78 (100.00%), Postives = 78/78 (100.00%), Query Frame = 0 

Query: 1  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
          MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD
Sbjct: 1  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60

Query: 61 GRCKAVDVTGPGESSVQG 79
          GRCKAVDVTGPGESSVQG
Sbjct: 61 GRCKAVDVTGPGESSVQG 78

[Close]
BLAST of Carg19359 vs. NCBI nr
Match: XP_011658593.1 (PREDICTED: glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_7G010300 [Cucumis sativus])

HSP 1 Score: 152.9 bits (385), Expect = 1.2e-33
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 0 

Query: 1  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
          M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+D
Sbjct: 1  MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61 GRCKAVDVTGPGESSVQGS 80
          GR KAVDVTGPGE+SVQGS
Sbjct: 61 GRSKAVDVTGPGEASVQGS 79

[Close]
BLAST of Carg19359 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata])

HSP 1 Score: 151.0 bits (380), Expect = 4.6e-33
Identity = 73/78 (93.59%), Postives = 74/78 (94.87%), Query Frame = 0 

Query: 1  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
          M ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRS+GFRSLGVGEDVEF IE EAD
Sbjct: 1  MGERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEAD 60

Query: 61 GRCKAVDVTGPGESSVQG 79
          GR KAVDVTGPGESSVQG
Sbjct: 61 GRSKAVDVTGPGESSVQG 78

[Close]
BLAST of Carg19359 vs. TAIR10
Match: AT4G38680.1 (glycine rich protein 2)

HSP 1 Score: 101.7 bits (252), Expect = 5.7e-22
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 3  ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGR 62
          ER  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E + + R
Sbjct: 9  ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 63 CKAVDVTGPGESSVQGS 80
           KA+DV+GP  + VQG+
Sbjct: 69 PKAIDVSGPDGAPVQGN 85

[Close]
BLAST of Carg19359 vs. TAIR10
Match: AT2G21060.1 (glycine-rich protein 2B)

HSP 1 Score: 101.3 bits (251), Expect = 7.5e-22
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 3  ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGR 62
          +R  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E +  GR
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 63 CKAVDVTGPGESSVQGS 80
           KA++V+GP  + VQG+
Sbjct: 73 PKAIEVSGPDGAPVQGN 89

[Close]
BLAST of Carg19359 vs. TAIR10
Match: AT2G17870.1 (cold shock domain protein 3)

HSP 1 Score: 100.5 bits (249), Expect = 1.3e-21
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 0 

Query: 4  RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRC 63
          R  GKV WFSD KGYGFI+P++GGE+LFVHQSSI SDGFRSL +GE VE+ I   +DG+ 
Sbjct: 10 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64 KAVDVTGPGESSV 77
          KA++VT PG  S+
Sbjct: 70 KAIEVTAPGGGSL 82

[Close]
BLAST of Carg19359 vs. TAIR10
Match: AT4G36020.1 (cold shock domain protein 1)

HSP 1 Score: 90.9 bits (224), Expect = 1.0e-18
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 4  RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRC 63
          R +GKV WF+  KGYGFI+P++G  +LFVHQSSI S+G+RSL VG+ VEF I   +DG+ 
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64 KAVDVTGPG 73
          KAV+VT PG
Sbjct: 70 KAVNVTAPG 78

[Close]
BLAST of Carg19359 vs. Swiss-Prot
Match: sp|P27484|GRP2_NICSY (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 9.1e-25
Identity = 53/76 (69.74%), Postives = 62/76 (81.58%), Query Frame = 0 

Query: 3  ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGR 62
          +R  G VKWFSDQKG+GFI+P++GGEDLFVHQS IRS+GFRSL  GE VEF +E   DGR
Sbjct: 7  QRAKGTVKWFSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGR 66

Query: 63 CKAVDVTGPGESSVQG 79
           KAVDVTGP  ++VQG
Sbjct: 67 TKAVDVTGPDGAAVQG 82

[Close]
BLAST of Carg19359 vs. Swiss-Prot
Match: sp|Q41188|CSP2_ARATH (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 1.0e-20
Identity = 47/77 (61.04%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 3  ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGR 62
          ER  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E + + R
Sbjct: 9  ERRKGSVKWFDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNR 68

Query: 63 CKAVDVTGPGESSVQGS 80
           KA+DV+GP  + VQG+
Sbjct: 69 PKAIDVSGPDGAPVQGN 85

[Close]
BLAST of Carg19359 vs. Swiss-Prot
Match: sp|Q38896|CSP4_ARATH (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 1.4e-20
Identity = 46/77 (59.74%), Postives = 60/77 (77.92%), Query Frame = 0 

Query: 3  ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGR 62
          +R  G VKWF  QKG+GFI+P++GG+DLFVHQSSIRS+GFRSL   E VEF +E +  GR
Sbjct: 13 DRRKGTVKWFDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGR 72

Query: 63 CKAVDVTGPGESSVQGS 80
           KA++V+GP  + VQG+
Sbjct: 73 PKAIEVSGPDGAPVQGN 89

[Close]
BLAST of Carg19359 vs. Swiss-Prot
Match: sp|Q94C69|CSP3_ARATH (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 2.3e-20
Identity = 47/73 (64.38%), Postives = 58/73 (79.45%), Query Frame = 0 

Query: 4  RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRC 63
          R  GKV WFSD KGYGFI+P++GGE+LFVHQSSI SDGFRSL +GE VE+ I   +DG+ 
Sbjct: 10 RSIGKVSWFSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKT 69

Query: 64 KAVDVTGPGESSV 77
          KA++VT PG  S+
Sbjct: 70 KAIEVTAPGGGSL 82

[Close]
BLAST of Carg19359 vs. Swiss-Prot
Match: sp|O65639|CSP1_ARATH (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 1.8e-17
Identity = 42/69 (60.87%), Postives = 54/69 (78.26%), Query Frame = 0 

Query: 4  RVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRC 63
          R +GKV WF+  KGYGFI+P++G  +LFVHQSSI S+G+RSL VG+ VEF I   +DG+ 
Sbjct: 10 RSTGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKT 69

Query: 64 KAVDVTGPG 73
          KAV+VT PG
Sbjct: 70 KAVNVTAPG 78

[Close]
BLAST of Carg19359 vs. TrEMBL
Match: tr|A0A0A0K4M5|A0A0A0K4M5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 7.9e-34
Identity = 73/79 (92.41%), Postives = 76/79 (96.20%), Query Frame = 0 

Query: 1  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
          M ERVSGKVKWFSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+D
Sbjct: 1  MGERVSGKVKWFSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESD 60

Query: 61 GRCKAVDVTGPGESSVQGS 80
          GR KAVDVTGPGE+SVQGS
Sbjct: 61 GRSKAVDVTGPGEASVQGS 79

[Close]
BLAST of Carg19359 vs. TrEMBL
Match: tr|A0A1S3BIY4|A0A1S3BIY4_CUCME (LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC103490405 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 1.9e-27
Identity = 63/68 (92.65%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 12 FSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRCKAVDVTGP 71
          FSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+DGR KAVDVTGP
Sbjct: 1  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 72 GESSVQGS 80
          GE+SVQGS
Sbjct: 61 GEASVQGS 68

[Close]
BLAST of Carg19359 vs. TrEMBL
Match: tr|A0A2N9HCQ1|A0A2N9HCQ1_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37261 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.6e-26
Identity = 60/79 (75.95%), Postives = 68/79 (86.08%), Query Frame = 0 

Query: 1  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
          M+ER+SG VKWF+DQKG+GFI+PN+G EDLFVHQSSIRS+GFRSLG GE VE+ IE   D
Sbjct: 1  MAERLSGTVKWFNDQKGFGFITPNDGAEDLFVHQSSIRSEGFRSLGEGETVEYQIESGND 60

Query: 61 GRCKAVDVTGPGESSVQGS 80
          GR KAVDVTGPGE  VQGS
Sbjct: 61 GRTKAVDVTGPGEGPVQGS 79

[Close]
BLAST of Carg19359 vs. TrEMBL
Match: tr|A0A251MYP5|A0A251MYP5_PRUPE (Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G163000 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 3.6e-26
Identity = 58/79 (73.42%), Postives = 69/79 (87.34%), Query Frame = 0 

Query: 1  MSERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEAD 60
          M ER+SG VKWF+DQKG+GFI+PN+GG+DLFVHQSSIR++GFR+LG GE VEF IE ++D
Sbjct: 1  MGERLSGTVKWFNDQKGFGFITPNDGGDDLFVHQSSIRTEGFRTLGDGESVEFQIESDSD 60

Query: 61 GRCKAVDVTGPGESSVQGS 80
          GR KAVDVTGP E  VQGS
Sbjct: 61 GRTKAVDVTGPAEGPVQGS 79

[Close]
BLAST of Carg19359 vs. TrEMBL
Match: tr|V7AVE5|V7AVE5_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G025100g PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 7.9e-26
Identity = 56/77 (72.73%), Postives = 69/77 (89.61%), Query Frame = 0 

Query: 3  ERVSGKVKWFSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGR 62
          +R++GKVKWF+DQKG+GFI+P++GGEDLFVHQSSIRSDGFRSL +GE VEF I+ + +GR
Sbjct: 7  QRITGKVKWFNDQKGFGFITPDDGGEDLFVHQSSIRSDGFRSLALGESVEFFIDSDTEGR 66

Query: 63 CKAVDVTGPGESSVQGS 80
           KAVDVTGP ES VQG+
Sbjct: 67 TKAVDVTGPDESPVQGT 83

The following BLAST results are available for this feature:
BLAST of Carg19359 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022952475.14.0e-3798.73glycine-rich protein 2-like [Cucurbita moschata][more]
XP_022969511.18.9e-37100.00glycine-rich protein 2-like [Cucurbita maxima][more]
XP_023554277.18.9e-37100.00glycine-rich protein 2-like [Cucurbita pepo subsp. pepo][more]
XP_011658593.11.2e-3392.41PREDICTED: glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical pro... [more]
XP_022928350.14.6e-3393.59glycine-rich protein 2-like [Cucurbita moschata][more]
BLAST of Carg19359 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G38680.15.7e-2261.04glycine rich protein 2[more]
AT2G21060.17.5e-2259.74glycine-rich protein 2B[more]
AT2G17870.11.3e-2164.38cold shock domain protein 3[more]
AT4G36020.11.0e-1860.87cold shock domain protein 1[more]
BLAST of Carg19359 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|P27484|GRP2_NICSY9.1e-2569.74Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1[more]
sp|Q41188|CSP2_ARATH1.0e-2061.04Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1[more]
sp|Q38896|CSP4_ARATH1.4e-2059.74Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P... [more]
sp|Q94C69|CSP3_ARATH2.3e-2064.38Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P... [more]
sp|O65639|CSP1_ARATH1.8e-1760.87Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1[more]
BLAST of Carg19359 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0K4M5|A0A0A0K4M5_CUCSA7.9e-3492.41Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1[more]
tr|A0A1S3BIY4|A0A1S3BIY4_CUCME1.9e-2792.65LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC1... [more]
tr|A0A2N9HCQ1|A0A2N9HCQ1_FAGSY3.6e-2675.95Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS37261 PE=4 SV=1[more]
tr|A0A251MYP5|A0A251MYP5_PRUPE3.6e-2673.42Uncharacterized protein OS=Prunus persica OX=3760 GN=PRUPE_8G163000 PE=4 SV=1[more]
tr|V7AVE5|V7AVE5_PHAVU7.9e-2672.73Uncharacterized protein OS=Phaseolus vulgaris OX=3885 GN=PHAVU_009G025100g PE=4 ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0003677DNA binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: INTERPRO
TermDefinition
IPR012340NA-bd_OB-fold
IPR019844Cold-shock_CS
IPR011129CSD
IPR002059CSP_DNA-bd
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
cellular_component GO:0005575 cellular_component
molecular_function GO:0003677 DNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg19359-RACarg19359-RAmRNA


InterPro
Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002059Cold-shock protein, DNA-bindingPRINTSPR00050COLDSHOCKcoord: 28..37
score: 64.04
coord: 7..22
score: 63.69
coord: 43..61
score: 40.86
IPR002059Cold-shock protein, DNA-bindingPFAMPF00313CSDcoord: 6..70
e-value: 5.2E-24
score: 83.8
IPR002059Cold-shock protein, DNA-bindingCDDcd04458CSP_CDScoord: 5..70
e-value: 9.5597E-24
score: 89.5602
IPR011129Cold shock domainSMARTSM00357csp_8coord: 6..71
e-value: 6.5E-23
score: 92.1
NoneNo IPR availableGENE3DG3DSA:2.40.50.140coord: 1..81
e-value: 1.4E-27
score: 97.7
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 64..98
NoneNo IPR availablePANTHERPTHR11544COLD SHOCK DOMAIN CONTAINING PROTEINScoord: 1..134
NoneNo IPR availablePANTHERPTHR11544:SF57SUBFAMILY NOT NAMEDcoord: 1..134
IPR019844Cold-shock conserved sitePROSITEPS00352COLD_SHOCKcoord: 18..37
IPR012340Nucleic acid-binding, OB-foldSUPERFAMILYSSF50249Nucleic acid-binding proteinscoord: 2..70

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Carg19359Cla015838Watermelon (97103) v1carwmB0305
Carg19359Csa7G010300Cucumber (Chinese Long) v2carcuB0342
Carg19359MELO3C013368Melon (DHL92) v3.5.1carmeB0321
Carg19359ClCG02G004220Watermelon (Charleston Gray)carwcgB0308
Carg19359CSPI07G00860Wild cucumber (PI 183967)carcpiB0348
Carg19359Cucsa.381750Cucumber (Gy14) v1carcgyB0373
Carg19359CmaCh11G013860Cucurbita maxima (Rimu)carcmaB0439
Carg19359CmaCh19G007310Cucurbita maxima (Rimu)carcmaB0440
Carg19359CmoCh19G007390Cucurbita moschata (Rifu)carcmoB0433
Carg19359Lsi11G011910Bottle gourd (USVL1VR-Ls)carlsiB290
Carg19359Cp4.1LG15g05730Cucurbita pepo (Zucchini)carcpeB0436
Carg19359CsGy7G000700Cucumber (Gy14) v2carcgybB0326
Carg19359MELO3C013368.2Melon (DHL92) v3.6.1carmedB0330
Carg19359CsaV3_7G000900Cucumber (Chinese Long) v3carcucB0347
Carg19359Cla97C02G031040Watermelon (97103) v2carwmbB0324
Carg19359Bhi05G001487Wax gourdcarwgoB0397
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Carg19359Carg05702Silver-seed gourdcarcarB342
The following block(s) are covering this gene:
GeneOrganismBlock
Carg19359Wax gourdcarwgoB0400
Carg19359Silver-seed gourdcarcarB343
Carg19359Cucumber (Gy14) v2carcgybB0325
Carg19359Cucurbita maxima (Rimu)carcmaB0441
Carg19359Cucurbita maxima (Rimu)carcmaB0442
Carg19359Cucurbita maxima (Rimu)carcmaB0443
Carg19359Cucurbita moschata (Rifu)carcmoB0432
Carg19359Cucurbita moschata (Rifu)carcmoB0435
Carg19359Cucurbita moschata (Rifu)carcmoB0436
Carg19359Cucurbita pepo (Zucchini)carcpeB0437
Carg19359Cucurbita pepo (Zucchini)carcpeB0439
Carg19359Cucurbita pepo (Zucchini)carcpeB0440
Carg19359Wild cucumber (PI 183967)carcpiB0347
Carg19359Cucumber (Chinese Long) v2carcuB0341
Carg19359Cucumber (Chinese Long) v3carcucB0346
Carg19359Bottle gourd (USVL1VR-Ls)carlsiB289
Carg19359Melon (DHL92) v3.5.1carmeB0319
Carg19359Melon (DHL92) v3.6.1carmedB0328
Carg19359Watermelon (Charleston Gray)carwcgB0309
Carg19359Watermelon (97103) v1carwmB0306
Carg19359Watermelon (97103) v2carwmbB0325