Cla97C01G015260 (gene) Watermelon (97103) v2

Overview
NameCla97C01G015260
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Description50S ribosomal protein L13
LocationCla97Chr01 : 29023451 .. 29027123 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAAGCCAAGCAGCTAGTTCTTTCAATGGCAACATGAAGGCAAACCTCCTTTACTTTTACACTAATGCATATTAATTATTGGAAATCGTTGTGTAATGCATATTGTAGTTCATCATGGATTAGAAATTGGCTTCTTGTTTACTGCACGCCAAGTGTATGTAGAATTTATTTGTGGATTTTCTTTTCGTTTTTGTTGTAGTATATTGATGAGATAGTGAAGTTTACTGTTCAATTTGTTCTTTGAAGTGCCATTATGGGTATCAGATATGTTTGGAATGACTTTCTAACTGCTTAAAAATACTTATTTTTGCCCTTAAAAATACATTTTTAAGCATTTAGAAAGTCATTCGAAATAGGCTCTAAATTGTGCTTTGGATTCTGCGTGTTCTTGTCCCGTTGATTTTGAAAATGATAGTGTCTAGTCTATTAGCTTTGTTACACAATCTTCTTTTTTTTTTTTTTTTTTTATTATTATTCTTTTTATATATCCGTGAGTGCCCAGGTCAACTTACGCGCACCTCAACCCTACAACATTTGGGTGTCAAGGAAACTCGTAGGATAGGTAGGTGGCCACCATGGATTGCACCCATGACCTTTTAGTCATTTATTGAGACTATGTCTTTTTTTTTACCACACAATCTCATGCTAGAGTTTAGGGAAATGTTTTATGCCACATATTGGGGAAATGTTTGCTTGGAAACTCAGGTGCACCTGTCTATCAACTTTATTTGATAAGAAGCATTGAATTAATAAAGAAGAAACAAAATTTGTATTCTAGGTTTGATTAGGCTTTAAATTCTGGATATTTAGAAATTGTCCCTGGAATTTATTATAATTTGGACAGCATGCTTTTAAATTTAAAGTAAACTACCTTCCAAAAAGGAGAGAGAAAAATCAATTGCTACTGATTTTATCATGTCTAAACCATATGGTAGATTGATAGTGTAATATTTTGTATTGCGTTTGATGTTAGGTTTTATTCAGGAAAGTAGCGTGTTTTTAGGGGGTAGGGTAGTTAGATTTCCTTATTTTAGATCATTCTTAGTGTTGTCTACTTTGAACATGTCTTCCCATGGTGTTTTATGTTAGCCATTAAATGATATTTTCTCCATTTACCATTTGAAAATTAAATTATCTTATGAATTCTGATTTTCTACATATTTAGTTTTTCTTCTTTTGTATTGATAATACCTCCAAGTTTCTTCAACTTGGACGAGGGGGATTTTGGCATTGGAGATTTTAGAAAAGGGAGTAGGACCCTTCTCCAAGTGGGTTTTCGAGATTTTATAGTGGACTGTCGGCATTCCATTTAAAAGAGAAATATGGGTCTTGGATTGGGATGATTCATGAAGGAAATTTTATATAGTAGCTGAAGAAGCCAGCCCTTGTTTTCAATGTCTTAAGTTACTTATCTGATTGACTCTGATACATCTTCTGAGTGGTAGAAGAATGTAAAAGGCCCTTGGCTGGGCTTGGTACCTTTCTGCTCCTAGGATCCAAGCCTTGTGTGCTATCATCAATGATAAGCAGCAACACACTACTAATTGCTGGATTTTTCTCTTTTGAAGGAATTTACTACGTAGAGAAATTTAGAACTGGACTCATATGAGTAGAGCTGTAGAGATTCTGATTCCATAGGATCTATTGTTTATTATGAAAGAGATAGTAAGACAAATTGACCTCTTTTCCCTCTTTTGATAAGAACCTTAGCATACTTATTAGAATATAAGTTTTCCCATTTTTATAGATGAGCAAAGCAATTTACCTACGGACCCAATATTAACATGTAAGCTTTTGTGGAAAAATAACTACTTACCAATGTTCATTTTGTGATCGTCATTGATGGTATAAAACACTGCAGGCAAAATTCAAAGGGATTCTCCTTGTTAATTTGAGTTGTTATATGCACGCATTGTGTAGAAGGAGATGTGAAGACCTAAAAATTGTATATTTTGTTGATGCAGTACTAAGGATTTTCCAATGATTGAAGGTCATGTTTGCATGAATAATGAAGGAAGTTGTTGTGGATACGGGTGGTTCATTTTAGCACCTTGTTTTCTCTGCTGTTATGTGGATTATTTGATTGTAATGAGAGGAAAAATTTTATCTGGTTCAAAGTTATCAGCTAGGACCTTTAGTAAGAATGAAATGGGAAGGCTTTCATTTATAGTGGTTGGAATTTTATTCTCAAGTAGTACGGTCTGCTCTTGTGTCATTCCGAATCAGATTGATAGGGAGTTGATGGAAACCCTCTTGGGGCTGAAGGAGAGAAATCTTCATCTCTTTTGGAACAAGTGGAACACAGAGGCATCTTCGTTTTATAGTATACAGCTTTCGGCTTTGTGATGGTCTTCAAACCACAAATATTCTGTTGTAATTATAGCTCCACAACTATTAGGAATAGGTGAGCTTTTTTGTGATAGTTTCTCTTTGGTTGGAAGCTGTCTTAGCTCCTGCCCTTTAGGCTATCTCGTTTCTCCTTTTTTATTAAACAAATATATCTTTATACGTTTCTTATCAACAATGTTCAACAGTATTGTATAAGTACTTTTATTATAGGAGTGCAAACCATTAACATCGTTATGCATCAACAATGTTCCAGAAAGCGCTTGCTGGCTTGAGGCGCATCAATTTGGAAGGCCTGAGGTGGAGAGTGTTTGATGCCAAAGGCCAGGTTAGAGCAATATTAACACTTCCCTTGACATTTGGTTTTTCAGATTATGAGATAGAATGTTCAACGGTAATGATATTTTCTAGAAACAAATACAGCTGCTCTAACTTTTTCTACTAGGTTCTTGGGAGATTGGCATCTCAAATATCTACCGTGCTTCAAGGCAAGGATAAGCCAACATATACACCCAATCGAGATGATGGGGATATGTGCATTGTGCTTAATGCCAAGGATATCGCTGTCACAGGAAGAAAACTGACTAATAAAGTTTATTACTGGCATACTGGGTAAGTACTATATGTTTCTGTAGTTTTACTCCAATTATTGGTCACTGGCACGTACTCTGAAGTTCGTTAATTATCTTAACAACATTTGTTTTATTGAAATTTTAGCTTCTGGTTGAATCTAAATGGCCTAGGGGGGCCTGTTTGGATTAATTTTCTAAGACATAAAAATACTTTTTTTTTGGCACTTAAAAACTGTTTTCAAGCACTTAACAAGTCAACTATGCATGGCTTGTAGGTACGTTGGTAACCTGAAGGAAAGAAGTTTGAAGGATCAGATGGCCAAAGATCCTACAGAAGTCATACGTAAAGCTGTATTGCGCATGCTTCCAAAAAACAAACTGCGTGACGTTAGTTCTTAAATTTGTTTGGTGTTTGAGATTTTCTGTTATCTAATGGAGGATTAGCTTCAGTTTTTGATAAAATCTCTATCCTTTTTCCTCGGGCATTGTTGTACAGTACAGGTATTTCATATTAGAACTATTTGATGCAGGATAGAGATCGAAAACTGAGAATTTTTGCTGGAGATGAACACCCGTTTGACGACCGCCCACTTGAGCCCTATATCATGCCACCTCGTAATGTAAGGGAGATGCGTCCTCAGGTAAGACGAGCCATGATTCGAGCACAAAAGAAGGCCGAGCAACAACAAAACAGCGAGAATGATGGAAAGAAAAGTAGAAAGAAGGAAGAGAAGGTAGAAGTGATAGCATAA

mRNA sequence

ATGGCAAGCCAAGCAGCTAGTTCTTTCAATGGCAACATGAAGAAAGCGCTTGCTGGCTTGAGGCGCATCAATTTGGAAGGCCTGAGGTGGAGAGTGTTTGATGCCAAAGGCCAGGTTCTTGGGAGATTGGCATCTCAAATATCTACCGTGCTTCAAGGCAAGGATAAGCCAACATATACACCCAATCGAGATGATGGGGATATGTGCATTGTGCTTAATGCCAAGGATATCGCTGTCACAGGAAGAAAACTGACTAATAAAGTTTATTACTGGCATACTGGGTACGTTGGTAACCTGAAGGAAAGAAGTTTGAAGGATCAGATGGCCAAAGATCCTACAGAAGTCATACGTAAAGCTGTATTGCGCATGCTTCCAAAAAACAAACTGCGTGACGATAGAGATCGAAAACTGAGAATTTTTGCTGGAGATGAACACCCGTTTGACGACCGCCCACTTGAGCCCTATATCATGCCACCTCGTAATGTAAGGGAGATGCGTCCTCAGGTAAGACGAGCCATGATTCGAGCACAAAAGAAGGCCGAGCAACAACAAAACAGCGAGAATGATGGAAAGAAAAGTAGAAAGAAGGAAGAGAAGGTAGAAGTGATAGCATAA

Coding sequence (CDS)

ATGGCAAGCCAAGCAGCTAGTTCTTTCAATGGCAACATGAAGAAAGCGCTTGCTGGCTTGAGGCGCATCAATTTGGAAGGCCTGAGGTGGAGAGTGTTTGATGCCAAAGGCCAGGTTCTTGGGAGATTGGCATCTCAAATATCTACCGTGCTTCAAGGCAAGGATAAGCCAACATATACACCCAATCGAGATGATGGGGATATGTGCATTGTGCTTAATGCCAAGGATATCGCTGTCACAGGAAGAAAACTGACTAATAAAGTTTATTACTGGCATACTGGGTACGTTGGTAACCTGAAGGAAAGAAGTTTGAAGGATCAGATGGCCAAAGATCCTACAGAAGTCATACGTAAAGCTGTATTGCGCATGCTTCCAAAAAACAAACTGCGTGACGATAGAGATCGAAAACTGAGAATTTTTGCTGGAGATGAACACCCGTTTGACGACCGCCCACTTGAGCCCTATATCATGCCACCTCGTAATGTAAGGGAGATGCGTCCTCAGGTAAGACGAGCCATGATTCGAGCACAAAAGAAGGCCGAGCAACAACAAAACAGCGAGAATGATGGAAAGAAAAGTAGAAAGAAGGAAGAGAAGGTAGAAGTGATAGCATAA

Protein sequence

MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVRRAMIRAQKKAEQQQNSENDGKKSRKKEEKVEVIA
Homology
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BLAST of Cla97C01G015260 vs. NCBI nr
Match: XP_022133371.1 (uncharacterized protein LOC111005959 [Momordica charantia])

HSP 1 Score: 339.0 bits (868), Expect = 1.1e-89
Identity = 166/176 (94.32%), Postives = 173/176 (98.30%), Query Frame = 0 

Query: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYT 60
           MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTYT
Sbjct: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYT 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI VTGRKLT+K Y+WHTGYVGNLKERSLKDQ+AKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVRRAMIRA 177
           LRMLP+NKLRDDRDRKLRIFAGDEHPF DRPLEPYIMPPRNVRE+RP+VRRAMIRA
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRA 176

[Close]
BLAST of Cla97C01G015260 vs. NCBI nr
Match: XP_022139365.1 (uncharacterized protein LOC111010318 [Momordica charantia])

HSP 1 Score: 334.3 bits (856), Expect = 2.8e-88
Identity = 163/176 (92.61%), Postives = 172/176 (97.73%), Query Frame = 0 

Query: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYT 60
           MASQAA+SFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTY 
Sbjct: 1   MASQAATSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVVQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI VTGRKLT+K Y+WHTGYVGNLKERSLKDQ+AKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDICVTGRKLTDKFYHWHTGYVGNLKERSLKDQLAKDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVRRAMIRA 177
           LRMLP+N+LRDDRDRKLRIFAGDEHPF DRPLEPYIMPPRNVRE+RP+VRRAMIRA
Sbjct: 121 LRMLPRNELRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVRELRPRVRRAMIRA 176

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BLAST of Cla97C01G015260 vs. NCBI nr
Match: XP_011657807.1 (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus] >XP_011657808.1 PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus] >KGN48451.1 hypothetical protein Csa_6G487720 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 3.7e-88
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 0 

Query: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYT 60
           MASQAA+S  GNMKKALAGL+RINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTY 
Sbjct: 1   MASQAATSITGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDIAVTGRKLT KVYYWHTGYVGNLKER+L++QM +DPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVRRAMIRA 177
           LRMLPKNKLRDDRDRKLRIFAGDEHPF DRPLEPYIMPPRNVREMRPQVRRAMIRA
Sbjct: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRA 176

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BLAST of Cla97C01G015260 vs. NCBI nr
Match: XP_023003668.1 (uncharacterized protein LOC111497191 [Cucurbita maxima])

HSP 1 Score: 329.7 bits (844), Expect = 6.9e-87
Identity = 159/176 (90.34%), Postives = 170/176 (96.59%), Query Frame = 0 

Query: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYT 60
           MASQ A++FNGNMK+ALAG++RINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTY 
Sbjct: 1   MASQVATTFNGNMKRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI V+GRK T+K+YYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIYVSGRKPTDKIYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVRRAMIRA 177
           LRMLP+NKLRDDRDRKLRIFAGDEHPF DRPLEPYIMPPRNVREMRP+ RRAMIRA
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRA 176

[Close]
BLAST of Cla97C01G015260 vs. NCBI nr
Match: XP_023518866.1 (uncharacterized protein LOC111782260 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 327.8 bits (839), Expect = 2.6e-86
Identity = 158/176 (89.77%), Postives = 170/176 (96.59%), Query Frame = 0 

Query: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYT 60
           MASQ AS+FNGNMK+ALAG++RINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTY 
Sbjct: 1   MASQVASTFNGNMKRALAGIKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI V+GRK T+K+YYWHTGYVG++KERSLKDQMAKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIYVSGRKPTDKIYYWHTGYVGHVKERSLKDQMAKDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVRRAMIRA 177
           LRMLP+NKLRDDRDRKLRIFAGDEHPF DRPLEPYIMPPRNVREMRP+ RRAMIRA
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPRARRAMIRA 176

[Close]
BLAST of Cla97C01G015260 vs. TrEMBL
Match: tr|A0A0A0KL19|A0A0A0KL19_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487720 PE=3 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 2.4e-88
Identity = 163/176 (92.61%), Postives = 170/176 (96.59%), Query Frame = 0 

Query: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYT 60
           MASQAA+S  GNMKKALAGL+RINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTY 
Sbjct: 1   MASQAATSITGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDIAVTGRKLT KVYYWHTGYVGNLKER+L++QM +DPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVRRAMIRA 177
           LRMLPKNKLRDDRDRKLRIFAGDEHPF DRPLEPYIMPPRNVREMRPQVRRAMIRA
Sbjct: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRA 176

[Close]
BLAST of Cla97C01G015260 vs. TrEMBL
Match: tr|A0A1S3B177|A0A1S3B177_CUCME (50S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103484711 PE=3 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 1.5e-85
Identity = 158/170 (92.94%), Postives = 166/170 (97.65%), Query Frame = 0 

Query: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYT 60
           MASQAASS NGNMKKALAGL+RINLEGLRWRVFDAKGQVLGRLAS+ISTV+QGKDKPTYT
Sbjct: 1   MASQAASSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASKISTVIQGKDKPTYT 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDIAVTGRKLT KVYYWHTGYVG+LKER+L++QM +DPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGHLKERTLREQMNRDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVR 171
           LRMLPKNKLRDDRDRKLRIFAGDEHPF DRPLEPYIMPPRNVREMRPQVR
Sbjct: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVR 170

[Close]
BLAST of Cla97C01G015260 vs. TrEMBL
Match: tr|A0A2P4J5H2|A0A2P4J5H2_QUESU (50s ribosomal protein l13 OS=Quercus suber OX=58331 GN=CFP56_04987 PE=3 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 1.9e-85
Identity = 160/176 (90.91%), Postives = 167/176 (94.89%), Query Frame = 0 

Query: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYT 60
           MASQAASSFNGN+KKALAGLRRINL+GLRWRVFDAK QVLGRLASQISTV+QGKDKPTY 
Sbjct: 1   MASQAASSFNGNVKKALAGLRRINLDGLRWRVFDAKDQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI+VTGRKLTNK Y WHTGYVG+LKERSLKDQMAKDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDISVTGRKLTNKFYRWHTGYVGHLKERSLKDQMAKDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVRRAMIRA 177
           LRMLP+NKLRDDRDRKLRIFA  EHPF DRPLEPYIMPPR VREMRP+ RRAMIRA
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFADSEHPFGDRPLEPYIMPPRRVREMRPRARRAMIRA 176

[Close]
BLAST of Cla97C01G015260 vs. TrEMBL
Match: tr|F6I5K7|F6I5K7_VITVI (Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0171g00250 PE=3 SV=1)

HSP 1 Score: 323.6 bits (828), Expect = 3.3e-85
Identity = 156/172 (90.70%), Postives = 166/172 (96.51%), Query Frame = 0 

Query: 5   AASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYTPNRD 64
           A SSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKPTYTPNR+
Sbjct: 2   ATSSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYTPNRE 61

Query: 65  DGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAVLRML 124
           DGDMCIVLNAKDI+VTGRKLTNK Y WHTGY+G+LKERSLKDQ+AKDPTEVIRKAVLRML
Sbjct: 62  DGDMCIVLNAKDISVTGRKLTNKFYRWHTGYIGHLKERSLKDQLAKDPTEVIRKAVLRML 121

Query: 125 PKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVRRAMIRA 177
           P+NKLRDDRDRKLRIFAGDEHPF+DRPLEPY+MPPR VREMRP+ RRA IRA
Sbjct: 122 PRNKLRDDRDRKLRIFAGDEHPFNDRPLEPYVMPPRQVREMRPRARRATIRA 173

[Close]
BLAST of Cla97C01G015260 vs. TrEMBL
Match: tr|A0A251IW11|A0A251IW11_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G105900 PE=3 SV=1)

HSP 1 Score: 322.0 bits (824), Expect = 9.6e-85
Identity = 157/176 (89.20%), Postives = 166/176 (94.32%), Query Frame = 0 

Query: 1   MASQAASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPTYT 60
           MASQAA+SFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTV+QGKDKP Y 
Sbjct: 1   MASQAAASFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPIYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRKAV 120
           P RDDGDMCIVLNAKDI VTGRK+T+K Y WHTGYVG+LKERSLKDQMAKDPTEVIRKAV
Sbjct: 61  PYRDDGDMCIVLNAKDICVTGRKMTDKFYRWHTGYVGHLKERSLKDQMAKDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVRRAMIRA 177
           LRMLP+NKLRDDRDRKLRIFAG EHPF DRPLEPY+MPPR VREMRP+ RRAM+RA
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFAGSEHPFGDRPLEPYVMPPRTVREMRPRARRAMVRA 176

[Close]
BLAST of Cla97C01G015260 vs. Swiss-Prot
Match: sp|Q1AU63|RL13_RUBXD (50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) OX=266117 GN=rplM PE=3 SV=2)

HSP 1 Score: 141.0 bits (354), Expect = 1.5e-32
Identity = 66/127 (51.97%), Postives = 90/127 (70.87%), Query Frame = 0 

Query: 29  RWRVFDAKGQVLGRLASQISTVLQGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTNKV 88
           +W V DA+G+ LGRLA++IS +L+GK+KP YTP+ D GD  +V+NA  + VTGRK   KV
Sbjct: 14  KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKV 73

Query: 89  YYWHTGYVGNLKERSLKDQMAKDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEHPFD 148
           Y WHTGY G L+ERS +  + K P E++R+AV  M+PK +L   + +KLRI+AG EHP  
Sbjct: 74  YRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHPHA 133

Query: 149 DRPLEPY 156
            +  EPY
Sbjct: 134 GQTPEPY 140

[Close]
BLAST of Cla97C01G015260 vs. Swiss-Prot
Match: sp|B8G6P5|RL13_CHLAD (50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX=326427 GN=rplM PE=3 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 1.7e-31
Identity = 69/127 (54.33%), Postives = 88/127 (69.29%), Query Frame = 0 

Query: 30  WRVFDAKGQVLGRLASQISTVLQGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTNKVY 89
           W V DA G+VLGRLA+QIST+L+GK KPT+TP+ D GD  IV+NA+ I +TGRK   K+Y
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIY 74

Query: 90  YWHTGYVGNLKERSLKDQMAKDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEHPFDD 149
           Y H+GY G LKE   K  +AK P  ++R AV RMLPKN++      KLRI+AG  HP   
Sbjct: 75  YRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 150 RPLEPYI 157
           +  +PYI
Sbjct: 135 QQPKPYI 141

[Close]
BLAST of Cla97C01G015260 vs. Swiss-Prot
Match: sp|Q18CJ1|RL13_PEPD6 (50S ribosomal protein L13 OS=Peptoclostridium difficile (strain 630) OX=272563 GN=rplM PE=3 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 2.2e-31
Identity = 66/117 (56.41%), Postives = 86/117 (73.50%), Query Frame = 0 

Query: 29  RWRVFDAKGQVLGRLASQISTVLQGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTNKV 88
           +W + DA+G+ LGRLA++I+TVL+GK KPT+TP+ D GD  +V+NA+ I ++G+KL  K 
Sbjct: 14  KWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKY 73

Query: 89  YYWHTGYVGNLKERSLKDQMAKDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEH 146
           Y +HTGYVG LKE S +D M K P EVI  AV  MLPKNKLR     +LR+FAG EH
Sbjct: 74  YRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEH 130

[Close]
BLAST of Cla97C01G015260 vs. Swiss-Prot
Match: sp|A9WH96|RL13_CHLAA (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) OX=324602 GN=rplM PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-31
Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = 0 

Query: 30  WRVFDAKGQVLGRLASQISTVLQGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTNKVY 89
           W V DA G+VLGRLA+QIST+L+GK KPT+TP+ D GD  IV+NA+ I +TGRK   K+Y
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIY 74

Query: 90  YWHTGYVGNLKERSLKDQMAKDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEHPFDD 149
           Y HTGY G +K    K  +AK P  ++R AV RMLPKN++      KLRI+AG  HP   
Sbjct: 75  YRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 150 RPLEPYI 157
           +  +PYI
Sbjct: 135 QQPKPYI 141

[Close]
BLAST of Cla97C01G015260 vs. Swiss-Prot
Match: sp|B9LJG2|RL13_CHLSY (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) OX=480224 GN=rplM PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 2.8e-31
Identity = 68/127 (53.54%), Postives = 87/127 (68.50%), Query Frame = 0 

Query: 30  WRVFDAKGQVLGRLASQISTVLQGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTNKVY 89
           W V DA G+VLGRLA+QIST+L+GK KPT+TP+ D GD  IV+NA+ I +TGRK   K+Y
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIY 74

Query: 90  YWHTGYVGNLKERSLKDQMAKDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEHPFDD 149
           Y HTGY G +K    K  +AK P  ++R AV RMLPKN++      KLRI+AG  HP   
Sbjct: 75  YRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 150 RPLEPYI 157
           +  +PYI
Sbjct: 135 QQPKPYI 141

[Close]
BLAST of Cla97C01G015260 vs. TAIR10
Match: AT3G01790.1 (Ribosomal protein L13 family protein)

HSP 1 Score: 296.2 bits (757), Expect = 1.5e-80
Identity = 144/178 (80.90%), Postives = 161/178 (90.45%), Query Frame = 0 

Query: 1   MASQ--AASSFNGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVLQGKDKPT 60
           MA+Q  AA+SF GN+KKA+AG++RINL+GLRWRVFDA+GQVLGRLASQISTVLQ KDKPT
Sbjct: 1   MATQAAAAASFKGNLKKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPT 60

Query: 61  YTPNRDDGDMCIVLNAKDIAVTGRKLTNKVYYWHTGYVGNLKERSLKDQMAKDPTEVIRK 120
           Y PNRDDGD+CIVLNAK+I  TGRKLT+K Y WHTGY+G+LKERSLKDQMAKDPTEVIRK
Sbjct: 61  YCPNRDDGDICIVLNAKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRK 120

Query: 121 AVLRMLPKNKLRDDRDRKLRIFAGDEHPFDDRPLEPYIMPPRNVREMRPQVRRAMIRA 177
           AV RMLP N LRDDRDRKLRIF G EHPF D+PLEP++MPPR VREMRP+ RRAMIRA
Sbjct: 121 AVWRMLPSNNLRDDRDRKLRIFEGGEHPFGDKPLEPFVMPPRRVREMRPRARRAMIRA 178

[Close]
BLAST of Cla97C01G015260 vs. TAIR10
Match: AT1G78630.1 (Ribosomal protein L13 family protein)

HSP 1 Score: 88.6 bits (218), Expect = 4.9e-18
Identity = 47/134 (35.07%), Postives = 77/134 (57.46%), Query Frame = 0 

Query: 30  WRVFDAKGQVLGRLASQISTVLQGKDKPTYTPNRDDGDMCIVLNAKDIAVTGRKLTNKVY 89
           W V DA  ++LGRLAS I+  ++GK+  +YTP+ D G   IV+NA+ +AV+G+K   K+Y
Sbjct: 105 WFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLY 164

Query: 90  YWHTGYVGNLKERSLKDQMAKDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEHPFDD 149
             H+G  G +   +      + P  ++  AV  MLPK +L       L+++ G +HP + 
Sbjct: 165 RRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 224

Query: 150 RPLEPYIMPPRNVR 164
           +  +P  +P R+ R
Sbjct: 225 Q--KPLDLPIRDKR 236

The following BLAST results are available for this feature:
BLAST of Cla97C01G015260 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_022133371.11.1e-8994.32uncharacterized protein LOC111005959 [Momordica charantia][more]
XP_022139365.12.8e-8892.61uncharacterized protein LOC111010318 [Momordica charantia][more]
XP_011657807.13.7e-8892.61PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus] >XP_011657... [more]
XP_023003668.16.9e-8790.34uncharacterized protein LOC111497191 [Cucurbita maxima][more]
XP_023518866.12.6e-8689.77uncharacterized protein LOC111782260 [Cucurbita pepo subsp. pepo][more]
BLAST of Cla97C01G015260 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KL19|A0A0A0KL19_CUCSA2.4e-8892.61Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G487720 PE=3 SV=1[more]
tr|A0A1S3B177|A0A1S3B177_CUCME1.5e-8592.9450S ribosomal protein L13 OS=Cucumis melo OX=3656 GN=LOC103484711 PE=3 SV=1[more]
tr|A0A2P4J5H2|A0A2P4J5H2_QUESU1.9e-8590.9150s ribosomal protein l13 OS=Quercus suber OX=58331 GN=CFP56_04987 PE=3 SV=1[more]
tr|F6I5K7|F6I5K7_VITVI3.3e-8590.70Uncharacterized protein OS=Vitis vinifera OX=29760 GN=VIT_14s0171g00250 PE=3 SV=... [more]
tr|A0A251IW11|A0A251IW11_MANES9.6e-8589.20Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_17G105900 PE=3 SV=... [more]
BLAST of Cla97C01G015260 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q1AU63|RL13_RUBXD1.5e-3251.9750S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16... [more]
sp|B8G6P5|RL13_CHLAD1.7e-3154.3350S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) OX... [more]
sp|Q18CJ1|RL13_PEPD62.2e-3156.4150S ribosomal protein L13 OS=Peptoclostridium difficile (strain 630) OX=272563 G... [more]
sp|A9WH96|RL13_CHLAA2.8e-3153.5450S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 6... [more]
sp|B9LJG2|RL13_CHLSY2.8e-3153.5450S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 6... [more]
BLAST of Cla97C01G015260 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G01790.11.5e-8080.90Ribosomal protein L13 family protein[more]
AT1G78630.14.9e-1835.07Ribosomal protein L13 family protein[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR005822Ribosomal_L13
IPR005823Ribosomal_L13_bac-type
IPR036899Ribosomal_L13_sf
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0034645 cellular macromolecule biosynthetic process
biological_process GO:0044238 primary metabolic process
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0017148 negative regulation of translation
cellular_component GO:0005840 ribosome
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0003729 mRNA binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G015260.1Cla97C01G015260.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036899Ribosomal protein L13 superfamilyGENE3DG3DSA:3.90.1180.10coord: 22..192
e-value: 5.7E-58
score: 197.3
IPR036899Ribosomal protein L13 superfamilySUPERFAMILYSSF52161Ribosomal protein L13coord: 29..152
IPR005823Ribosomal protein L13, bacterial-typeTIGRFAMTIGR01066TIGR01066coord: 29..148
e-value: 5.1E-46
score: 154.0
IPR005822Ribosomal protein L13PIRSFPIRSF002181RPL13p_RPL13Aa_RPL16e_RPL13ocoord: 13..199
e-value: 3.6E-53
score: 177.6
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 29..148
e-value: 2.5E-48
score: 163.4
IPR005822Ribosomal protein L13PANTHERPTHR11545RIBOSOMAL PROTEIN L13coord: 8..188
IPR005822Ribosomal protein L13HAMAPMF_01366Ribosomal_L13coord: 30..153
score: 26.514
IPR005822Ribosomal protein L13CDDcd00392Ribosomal_L13coord: 30..143
e-value: 7.56413E-55
score: 171.534
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 174..204
NoneNo IPR availablePANTHERPTHR11545:SF239S RIBOSOMAL PROTEIN L13, MITOCHONDRIALcoord: 8..188

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G015260Cla008513Watermelon (97103) v1wmwmbB244
Cla97C01G015260Csa6G487720Cucumber (Chinese Long) v2cuwmbB412
Cla97C01G015260MELO3C007496Melon (DHL92) v3.5.1mewmbB513
Cla97C01G015260ClCG01G016260Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G015260CSPI06G27420Wild cucumber (PI 183967)cpiwmbB433
Cla97C01G015260Cucsa.101790Cucumber (Gy14) v1cgywmbB127
Cla97C01G015260CmaCh07G007490Cucurbita maxima (Rimu)cmawmbB875
Cla97C01G015260CmoCh07G007710Cucurbita moschata (Rifu)cmowmbB849
Cla97C01G015260Lsi01G010470Bottle gourd (USVL1VR-Ls)lsiwmbB115
Cla97C01G015260CsGy6G026770Cucumber (Gy14) v2cgybwmbB394
Cla97C01G015260MELO3C007496.2Melon (DHL92) v3.6.1medwmbB505
Cla97C01G015260Carg05258Silver-seed gourdcarwmbB0839
Cla97C01G015260CsaV3_6G042550Cucumber (Chinese Long) v3cucwmbB430
Cla97C01G015260Bhi03G001519Wax gourdwgowmbB403
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G015260Watermelon (97103) v2wmbwmbB039
Cla97C01G015260Silver-seed gourdcarwmbB0185
Cla97C01G015260Silver-seed gourdcarwmbB0426
Cla97C01G015260Cucumber (Gy14) v2cgybwmbB095
Cla97C01G015260Cucumber (Gy14) v1cgywmbB406
Cla97C01G015260Cucurbita maxima (Rimu)cmawmbB561
Cla97C01G015260Cucurbita maxima (Rimu)cmawmbB670
Cla97C01G015260Cucurbita maxima (Rimu)cmawmbB800
Cla97C01G015260Cucurbita moschata (Rifu)cmowmbB147
Cla97C01G015260Cucurbita moschata (Rifu)cmowmbB642
Cla97C01G015260Cucurbita moschata (Rifu)cmowmbB777
Cla97C01G015260Wild cucumber (PI 183967)cpiwmbB103
Cla97C01G015260Cucumber (Chinese Long) v3cucwmbB106
Cla97C01G015260Cucumber (Chinese Long) v2cuwmbB101
Cla97C01G015260Bottle gourd (USVL1VR-Ls)lsiwmbB423
Cla97C01G015260Melon (DHL92) v3.6.1medwmbB261
Cla97C01G015260Melon (DHL92) v3.5.1mewmbB276
Cla97C01G015260Watermelon (Charleston Gray)wcgwmbB315
Cla97C01G015260Watermelon (97103) v1wmwmbB079
Cla97C01G015260Wax gourdwgowmbB286