CSPI06G27420 (gene) Wild cucumber (PI 183967)

NameCSPI06G27420
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
Description50S ribosomal protein L13, putative
LocationChr6 : 24098760 .. 24102888 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GTAAAATAATTTTGCTAATTGTTTTTACTCCTTTTTCGTTTTGTTAATTATTAAAATTCTCTCTATGCTCTAAACCCTCCCTCCAATTTTCAGCCACTGCACACTGCCGCCGCTCTTGCCCGACTCCGGCTCAGCAGCTGCCCTCGCACACTGCACTCTCAGCTGCCGCAGATATATTCTTCCCACGAACTCCCCGCTGCTCCTTCCGTCTCTCCGAGCATTCTGAGTTACTTATCTCTATCTTTCTCTCTCAGAATCACCGAGGTTCAGCCCCTCCACGCCGTTGGTGAGATCGCGCCGCCTTCGTTTATTGTTCAGATCCCCAAGGTTTTAGATTTTTTTTTGTTTATTGGTTGGTTATCTTCACCCACAGAGAAGAAAATCAAAAAAAATTGTTTATAATTTTTTTTTCAACCCCCAGTCTAAATGATAACATAAAATTGAGAATGTGTAATCACAGGCTAGAGGGATGACAAGGAGCATATTAATCTTATATAAATCAACAACAACAATAATAATAATAACTTGTTGGAACTAAAAAGTTTCTCTGTGGGTGAAGAAATTTGTATTTGAAAATATTGGAAAAATTATTTTGATGTTAATTGTTATTAGTTGAGGGTACTGATAAACGTCTTGTTGTGATGCGGAACAGCGAAAAGGTAGGACATTGAGAAATGGCAAGCCAAGCAGCTACTTCTATCAATGGCAACATGAAGGCAAGCCTTCTGTACTTTTACACCAATACATATTAATCATCCGAAATGGTTGTGGAATGCATATTGTAGATTTAAGTTGTGCTTTTGGTTATGCGTGTTCTTGGTCAGTTGGTTTTAAAAATGATATTGTCTACTCTATCAGCTCTTGTTTCACAATCTCATGCTAGAGTTTGGGGAAATCTTTTATGCTACAGTTGGGGAACTGTTTGCTTGGAAACTCAGGTGGACCTGTTGCTGAACTTTATTTGATAAGAAACATTGAATTAATAAAGAAGAACAATATTTTTATGCTAGGTTTGATTAGGGTTTACGTTCTGAACATTTAGAAACTGTTGTATTGTGTTTATTGTTACATTTTATTCAGGTAATTACCGCGTCTTTATAGGGTAAGGTGGTTAGATTTCCTTATGTCAGATCATTCTTAGTGTTACAGACTTCGAACATGCCTTCCCATGGTGTTTTATGTTAGCCATTAAATGATATTTTCTCCATGCACTGTTTGAAAATTAAGCTATCTTATGAATTTTGGTTTTCTATATATTTAGTTTTTCATCGTTTTTATTGATAACACCTGCCAGTTTCTTTAAATTGGATGAGGGGGGATTTTGGCACAGGCAATTTTAGAAAAAGGAGTAGGGCCTTTCTCCAAGTGGGTTTTGGAGATTCTATAAAGGACTATTTGGCATTCTATTATTAAAGAGAATACGTGTAGGATTTGGATGATTCATGAAGGAAAATTTCTATAGTAGCTGAAGAAGCCAGCGTTGTTTTCAATGACTTAAGTTACTATCTAATCGACAAGTGGCAGAAGAATGTAGAAGGCCCTTGGCTGGGCTTGGTACCTGTCTTCTCCAAGGATCCAAAGCTTTTGTACTATCATCAGTGATAAGCAGCAAGACACTAATAATTGCTAGATTTTTATCTTTTGAAGTAATTTGTGATTTAGAGAAATTTGAGACTGGTTTCATATGAGTGGAGCTGTAGAGATTCAGATTCCGCAAATACCTATTGTTAATAAATAAAAGAGGTAGTTAGACAAATTGACCTCTTTTCCCTCTTTTGTAAAGGACCTTAGCATACTTTTTAGAATATAAGTTCTCCCACTTCTATAGGTGAGCAAAGGAATTTACCCGCAAACCCAATATTAACTTGTAAGCTATTTGAAGGAGTAGCAAAATTCATTTTGTGATTGTCGTTGATGGTATAAATTCTGTAGGCAAAATTCCAGGAGATTCTCCTTGCTATATGACTACATTGTGTAGAAGAAGTGAAGACTTAAAAACTGTATGTTGTGTTGATGCACTTCTAAGGACTTTCCAATGATTGAAGGAGCCTGTTTCCATGGATAATGAAGGAAGTTATGTTGGGATATGGGCGGGTTTATTTTAGCACTTAGGTTTCTCTGCTGTTATATGGATTATTTGATTAGAATGAGAAGAAATTTTTTATTTGGTTCTAAGTTATCAGCCAGGAACTTATGTAAGAATGAAATAGGAAGGCTTTCGTTTATAGTGGTTGGGATTTTATCCTCAATGAGTTTGGTCTGCCCTTGTGTCTTCCGGATCAGATTGATAGCCGGTTTAATTTCTCTTATTTTACTTAGCCTTTCCCCGGTGTTCTTTGAATAAGTGCTTTTGTTATACAAGCATAAACCATTAACATTGCTATGCATCAACAATGTTCCAGAAAGCACTTGCTGGCTTGAAACGCATCAATTTGGAAGGCCTGAGGTGGAGAGTGTTTGATGCCAAAGGCCAGGTTAGAATGCAATATTAACTCTTCATTTGATAGTAGGTTCCTCAGATTATGAGATAGAATGTTCAAGAGTAGTGATATTTGCTAGAAACAAAGAAAGATGCTCTAACTTTTTCTACCAGGTTCTTGGGAGATTGGCATCTCAAATATCTACTGTGATTCAAGGCAAGGATAAGCCAACATATGCACCCAATCGAGATGATGGGGATATGTGCATTGTGCTTAATGCTAAGGATATCGCTGTCACAGGAAGAAAACTCACTAAAAAAGTTTATTACTGGCATACAGGGTAAGTACTATATGTTTCTGTAGTTTTACTTAAAAAGTATTGGTCATTGGCACGTACACTAAAGTTCATTAATCTATTTTCATCAGTTAAGATTTCATTGGCATTTGTTTTGTTGAAATTTGAGGCAAAATTAGAACGGCATTAGTTTGTCGAAATTTTAGGCCCTGTTTGGTTCTTATTTTCAATTTCTTAAGTATCAGAGTTGAACTTTTAGCCAAATTTCACAAACAAAACACTTCTCCAAAAACTACGTTTTTTTTAGTTTTCAAACCACTACTTGCTTTTTAAGAACATTGATAAAAATTAGATAACCAAAAACAAAAAATCAAATGGTTATCAAAGAGGGGTTTAACTTTTGGTTAAATCTAAATGACTTAGAAGGCGTATTTGGATTACTTTTCTAGGACTTAAAAAAGAATTTTCTTCTCTTAAAAACCTTTTTCTAAAATCTTAAAAATTCAATCCAAACAAGTGCTTGATTTCTATCTGCAGAAAAGTAGAGGAAGGAGATCACTTTAGTGCTGCTTTGGTAATATAGTAACAGTTTGATGTGGTCTGTGTTTCATTATTTGTCTTCAACTATGCGTGGCCTTGTAGGTATGTTGGGAACCTGAAGGAAAGAACTTTGAGGGAACAGATGACCAGAGACCCTACAGAAGTCATACGTAAAGCTGTGTTACGCATGCTTCCAAAAAATAAACTACGTGATGTTAGTCCTTAAATTTATTTGGTGTTTAAGATCTTCTGTTACCAATGGAGGACTACGTCAGTTGTTTATTAAATCTTCATCCTTTTTCATCCGCCATTGTACACTACAGGGTGGGTATTTATATTATAACTTCTATTTAATGCAGGATAGAGATCGAAAACTGAGAATTTTTGCTGGAGATGAACACCCTTTTGGTGACCGTCCACTGGAGCCCTATATCATGCCACCTCGTAATGTAAGAGAGATGCGTCCTCAGGTAAGACGGGCCATGATTCGAGCGCAAAAGATGGCCGAGCAACAACAAAACAACAAGAACGAAGGAAAGGAAAGTAGAAAGAAAGAAGAGAAGGTAGAAGTGACGGCCTGATTTCTTCTGTCCTTTGTGGGAGTTTTGTGTAGATCTGAATTAGCTTGGAATTTGATTGAATTGCATCAGAGCTGTCTTTAACGGAACCGTGTAACTGGGATTTGATATCATTTGTAAAGATATGATGCCATGTTTGTTCAATGCTTGGATATCCAAGGGAAACGTGTTTAGTTTCTTTTGCTTTAACTAATAAGTTATTTTGTTGCCATTACACTTTACGATCACTTCCAATTATTCTTTTCTTTTAGAGATGAAAAGACATGGTGAAGTTGCCAAAAACAGGACATAATGCA

mRNA sequence

ATGGCAAGCCAAGCAGCTACTTCTATCAATGGCAACATGAAGAAAGCACTTGCTGGCTTGAAACGCATCAATTTGGAAGGCCTGAGGTGGAGAGTGTTTGATGCCAAAGGCCAGGTTCTTGGGAGATTGGCATCTCAAATATCTACTGTGATTCAAGGCAAGGATAAGCCAACATATGCACCCAATCGAGATGATGGGGATATGTGCATTGTGCTTAATGCTAAGGATATCGCTGTCACAGGAAGAAAACTCACTAAAAAAGTTTATTACTGGCATACAGGGTATGTTGGGAACCTGAAGGAAAGAACTTTGAGGGAACAGATGACCAGAGACCCTACAGAAGTCATACGTAAAGCTGTGTTACGCATGCTTCCAAAAAATAAACTACGTGATGATAGAGATCGAAAACTGAGAATTTTTGCTGGAGATGAACACCCTTTTGGTGACCGTCCACTGGAGCCCTATATCATGCCACCTCGTAATGTAAGAGAGATGCGTCCTCAGGTAAGACGGGCCATGATTCGAGCGCAAAAGATGGCCGAGCAACAACAAAACAACAAGAACGAAGGAAAGGAAAGTAGAAAGAAAGAAGAGAAGGTAGAAGTGACGGCCTGA

Coding sequence (CDS)

ATGGCAAGCCAAGCAGCTACTTCTATCAATGGCAACATGAAGAAAGCACTTGCTGGCTTGAAACGCATCAATTTGGAAGGCCTGAGGTGGAGAGTGTTTGATGCCAAAGGCCAGGTTCTTGGGAGATTGGCATCTCAAATATCTACTGTGATTCAAGGCAAGGATAAGCCAACATATGCACCCAATCGAGATGATGGGGATATGTGCATTGTGCTTAATGCTAAGGATATCGCTGTCACAGGAAGAAAACTCACTAAAAAAGTTTATTACTGGCATACAGGGTATGTTGGGAACCTGAAGGAAAGAACTTTGAGGGAACAGATGACCAGAGACCCTACAGAAGTCATACGTAAAGCTGTGTTACGCATGCTTCCAAAAAATAAACTACGTGATGATAGAGATCGAAAACTGAGAATTTTTGCTGGAGATGAACACCCTTTTGGTGACCGTCCACTGGAGCCCTATATCATGCCACCTCGTAATGTAAGAGAGATGCGTCCTCAGGTAAGACGGGCCATGATTCGAGCGCAAAAGATGGCCGAGCAACAACAAAACAACAAGAACGAAGGAAAGGAAAGTAGAAAGAAAGAAGAGAAGGTAGAAGTGACGGCCTGA
BLAST of CSPI06G27420 vs. Swiss-Prot
Match: RL13_RUBXD (50S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=rplM PE=3 SV=2)

HSP 1 Score: 139.0 bits (349), Expect = 5.6e-32
Identity = 63/127 (49.61%), Postives = 91/127 (71.65%), Query Frame = 1

Query: 29  RWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIAVTGRKLTKKV 88
           +W V DA+G+ LGRLA++IS +++GK+KP Y P+ D GD  +V+NA  + VTGRK  +KV
Sbjct: 14  KWYVIDAEGKTLGRLAAEISRLLRGKNKPQYTPHVDVGDFVVVVNADKVEVTGRKAEQKV 73

Query: 89  YYWHTGYVGNLKERTLREQMTRDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEHPFG 148
           Y WHTGY G L+ER+ R+ + + P E++R+AV  M+PK +L   + +KLRI+AG EHP  
Sbjct: 74  YRWHTGYPGGLRERSYRQMLRKRPEEILRQAVRGMMPKTRLARRQLKKLRIYAGPEHPHA 133

Query: 149 DRPLEPY 156
            +  EPY
Sbjct: 134 GQTPEPY 140

BLAST of CSPI06G27420 vs. Swiss-Prot
Match: RL13_AQUAE (50S ribosomal protein L13 OS=Aquifex aeolicus (strain VF5) GN=rplM PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 2.4e-30
Identity = 65/126 (51.59%), Postives = 87/126 (69.05%), Query Frame = 1

Query: 29  RWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIAVTGRKLTKKV 88
           +W V DA G+ LGRLAS+I+ +++GK KP Y P+ D GD  IV+NA+ I VTG+KL +K 
Sbjct: 14  KWWVVDATGKTLGRLASEIAKILRGKHKPYYQPDVDCGDFVIVINAEKIRVTGKKLEQKK 73

Query: 89  YYWHTGYVGNLKERTLREQMTRDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEHPFG 148
           YYWH+ Y G LKERTL+  +   P EVIR AV RMLPKN+L     +KL+++ G EHP  
Sbjct: 74  YYWHSRYPGGLKERTLKWMLENKPEEVIRLAVKRMLPKNRLGHRMLKKLKVYRGPEHPHQ 133

Query: 149 DRPLEP 155
            +  +P
Sbjct: 134 AQKPQP 139

BLAST of CSPI06G27420 vs. Swiss-Prot
Match: RL13_CHLAD (50S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN=rplM PE=3 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 6.9e-30
Identity = 64/127 (50.39%), Postives = 87/127 (68.50%), Query Frame = 1

Query: 30  WRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIAVTGRKLTKKVY 89
           W V DA G+VLGRLA+QIST+++GK KPT+ P+ D GD  IV+NA+ I +TGRK  +K+Y
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPEQKIY 74

Query: 90  YWHTGYVGNLKERTLREQMTRDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGD 149
           Y H+GY G LKE   +  + + P  ++R AV RMLPKN++      KLRI+AG  HP   
Sbjct: 75  YRHSGYPGGLKEIPYKMMLAKHPERILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 150 RPLEPYI 157
           +  +PYI
Sbjct: 135 QQPKPYI 141

BLAST of CSPI06G27420 vs. Swiss-Prot
Match: RL13_PEPD6 (50S ribosomal protein L13 OS=Peptoclostridium difficile (strain 630) GN=rplM PE=3 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 9.0e-30
Identity = 62/117 (52.99%), Postives = 86/117 (73.50%), Query Frame = 1

Query: 29  RWRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIAVTGRKLTKKV 88
           +W + DA+G+ LGRLA++I+TV++GK KPT+ P+ D GD  +V+NA+ I ++G+KL +K 
Sbjct: 14  KWYLVDAEGKTLGRLATEIATVLRGKHKPTFTPHVDGGDFVVVVNAEKIVLSGKKLDQKY 73

Query: 89  YYWHTGYVGNLKERTLREQMTRDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEH 146
           Y +HTGYVG LKE + R+ M + P EVI  AV  MLPKNKLR     +LR+FAG EH
Sbjct: 74  YRYHTGYVGGLKEISYRDMMDKKPEEVISHAVSGMLPKNKLRSRMMTRLRVFAGAEH 130

BLAST of CSPI06G27420 vs. Swiss-Prot
Match: RL13_CHLSY (50S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 637 / Y-400-fl) GN=rplM PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-29
Identity = 63/127 (49.61%), Postives = 86/127 (67.72%), Query Frame = 1

Query: 30  WRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIAVTGRKLTKKVY 89
           W V DA G+VLGRLA+QIST+++GK KPT+ P+ D GD  IV+NA+ I +TGRK  +K+Y
Sbjct: 15  WYVIDASGKVLGRLATQISTLLRGKHKPTFTPSIDGGDFVIVVNAEKIVLTGRKPDQKIY 74

Query: 90  YWHTGYVGNLKERTLREQMTRDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEHPFGD 149
           Y HTGY G +K    +  + + P  ++R AV RMLPKN++      KLRI+AG  HP   
Sbjct: 75  YRHTGYPGGIKATPYKMMLAKHPDRILRLAVKRMLPKNRMGRRLLSKLRIYAGPNHPHAA 134

Query: 150 RPLEPYI 157
           +  +PYI
Sbjct: 135 QQPKPYI 141

BLAST of CSPI06G27420 vs. TrEMBL
Match: A0A0A0KL19_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487720 PE=3 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 2.2e-107
Identity = 203/204 (99.51%), Postives = 203/204 (99.51%), Query Frame = 1

Query: 1   MASQAATSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60
           MASQAATSI GNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA
Sbjct: 1   MASQAATSITGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA 180
           LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA
Sbjct: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA 180

Query: 181 EQQQNNKNEGKESRKKEEKVEVTA 205
           EQQQNNKNEGKESRKKEEKVEVTA
Sbjct: 181 EQQQNNKNEGKESRKKEEKVEVTA 204

BLAST of CSPI06G27420 vs. TrEMBL
Match: A0A067EP51_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028816mg PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.6e-89
Identity = 168/204 (82.35%), Postives = 188/204 (92.16%), Query Frame = 1

Query: 1   MASQAATSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60
           MA+QAAT+ +GNMKKALAGL+RINLEGLRWRVFDAKGQVLGRLASQ++TV+QGKDKPTYA
Sbjct: 1   MANQAATAFSGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI VTGRKL  KVYYWHTGY+G+LKERTL+EQM RDPTE IRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA 180
           LRMLP+NKLRDDRDRKLRIF G EHPFGDRPLEPY+MPPR VRE+RP+VRRAMIR QK A
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKKA 180

Query: 181 EQQQNNKNEGKESRKKEEKVEVTA 205
           E QQ+NK + +++RKKE + EVTA
Sbjct: 181 EMQQSNK-DMRKNRKKEVEAEVTA 203

BLAST of CSPI06G27420 vs. TrEMBL
Match: V4U8B9_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016747mg PE=3 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 1.6e-89
Identity = 168/204 (82.35%), Postives = 188/204 (92.16%), Query Frame = 1

Query: 1   MASQAATSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60
           MA+QAAT+ +GNMKKALAGL+RINLEGLRWRVFDAKGQVLGRLASQ++TV+QGKDKPTYA
Sbjct: 1   MANQAATAFSGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI VTGRKL  KVYYWHTGY+G+LKERTL+EQM RDPTE IRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA 180
           LRMLP+NKLRDDRDRKLRIF G EHPFGDRPLEPY+MPPR VRE+RP+VRRAMIR QK A
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKKA 180

Query: 181 EQQQNNKNEGKESRKKEEKVEVTA 205
           E QQ+NK + +++RKKE + EVTA
Sbjct: 181 EMQQSNK-DMRKNRKKEVEAEVTA 203

BLAST of CSPI06G27420 vs. TrEMBL
Match: A0A061FIY2_THECC (Ribosomal protein L13 family protein OS=Theobroma cacao GN=TCM_035802 PE=3 SV=1)

HSP 1 Score: 332.0 bits (850), Expect = 5.0e-88
Identity = 164/205 (80.00%), Postives = 187/205 (91.22%), Query Frame = 1

Query: 1   MASQAA-TSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTY 60
           MA+QAA T+ NGN+KKALAGL+RINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKP Y
Sbjct: 1   MATQAAATTFNGNLKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPIY 60

Query: 61  APNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKA 120
           APNRDDGDMCIV+NAKD+ VTGRKLT K YYWHTGYVGNLKER+L++QM +DPTEVIRKA
Sbjct: 61  APNRDDGDMCIVINAKDVCVTGRKLTDKFYYWHTGYVGNLKERSLKDQMAKDPTEVIRKA 120

Query: 121 VLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKM 180
           VLRMLP+NKLRDDRDRKLRIFA  EHPFGDRPL+PY+MPPR VREMRP+ RRA+IRAQK 
Sbjct: 121 VLRMLPRNKLRDDRDRKLRIFANSEHPFGDRPLKPYVMPPRTVREMRPRARRALIRAQKK 180

Query: 181 AEQQQNNKNEGKESRKKEEKVEVTA 205
           AE+Q+   N+ ++ ++KE K+EVTA
Sbjct: 181 AEEQEQGGNQSRKGKRKEAKMEVTA 205

BLAST of CSPI06G27420 vs. TrEMBL
Match: M5XDK1_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011613mg PE=3 SV=1)

HSP 1 Score: 329.3 bits (843), Expect = 3.3e-87
Identity = 163/204 (79.90%), Postives = 186/204 (91.18%), Query Frame = 1

Query: 1   MASQAATSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60
           MASQAATS NGN+KKALAGL+RI+L+GLRW+VFDAKGQVLGRLASQISTVIQGKDKPTYA
Sbjct: 1   MASQAATSFNGNLKKALAGLRRIDLDGLRWKVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120
           PNRDDGDMCIVLNAKD+ VTGRKLT KVY+WHTGY+G+LKERTL++QM +DPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDVCVTGRKLTDKVYHWHTGYIGHLKERTLKDQMAKDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA 180
           LRMLP+NKLRDDRDRKLRIF G EHPFGDRPLEPY+MP R VREMRP+ RRAM+RAQK A
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFVGGEHPFGDRPLEPYLMPSRQVREMRPRTRRAMVRAQKKA 180

Query: 181 EQQQNNKNEGKESRKKEEKVEVTA 205
           EQQQ + N+ +  ++K ++ EV A
Sbjct: 181 EQQQQDANDPRRGKRK-DRPEVNA 203

BLAST of CSPI06G27420 vs. TAIR10
Match: AT3G01790.1 (AT3G01790.1 Ribosomal protein L13 family protein)

HSP 1 Score: 299.3 bits (765), Expect = 1.8e-81
Identity = 148/198 (74.75%), Postives = 171/198 (86.36%), Query Frame = 1

Query: 1   MASQAAT--SINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPT 60
           MA+QAA   S  GN+KKA+AG+KRINL+GLRWRVFDA+GQVLGRLASQISTV+Q KDKPT
Sbjct: 1   MATQAAAAASFKGNLKKAVAGIKRINLDGLRWRVFDARGQVLGRLASQISTVLQAKDKPT 60

Query: 61  YAPNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRK 120
           Y PNRDDGD+CIVLNAK+I  TGRKLT K Y WHTGY+G+LKER+L++QM +DPTEVIRK
Sbjct: 61  YCPNRDDGDICIVLNAKEIGFTGRKLTDKFYRWHTGYIGHLKERSLKDQMAKDPTEVIRK 120

Query: 121 AVLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQK 180
           AV RMLP N LRDDRDRKLRIF G EHPFGD+PLEP++MPPR VREMRP+ RRAMIRAQK
Sbjct: 121 AVWRMLPSNNLRDDRDRKLRIFEGGEHPFGDKPLEPFVMPPRRVREMRPRARRAMIRAQK 180

Query: 181 MAEQQQNNKNEGKESRKK 197
            AEQ +N   E K+ +K+
Sbjct: 181 KAEQAENEGTEVKKGKKR 198

BLAST of CSPI06G27420 vs. TAIR10
Match: AT1G78630.1 (AT1G78630.1 Ribosomal protein L13 family protein)

HSP 1 Score: 89.7 bits (221), Expect = 2.2e-18
Identity = 50/135 (37.04%), Postives = 78/135 (57.78%), Query Frame = 1

Query: 30  WRVFDAKGQVLGRLASQISTVIQGKDKPTYAPNRDDGDMCIVLNAKDIAVTGRKLTKKVY 89
           W V DA  ++LGRLAS I+  I+GK+  +Y P+ D G   IV+NA+ +AV+G+K  +K+Y
Sbjct: 105 WFVVDATDKILGRLASTIANHIRGKNLASYTPSVDMGAFVIVVNAEKVAVSGKKRNQKLY 164

Query: 90  YWHTGYVGNLKERTLREQMTRDPTEVIRKAVLRMLPKNKLRDDRDRKLRIFAGDEHPF-G 149
             H+G  G +   T  +   R P  ++  AV  MLPK +L       L+++ G +HP   
Sbjct: 165 RRHSGRPGGMTVETFDQLQQRIPERIVEHAVRGMLPKGRLGRALFNHLKVYKGPDHPHEA 224

Query: 150 DRPLEPYIMPPRNVR 164
            +PL+   +P R+ R
Sbjct: 225 QKPLD---LPIRDKR 236

BLAST of CSPI06G27420 vs. NCBI nr
Match: gi|778718104|ref|XP_011657807.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus])

HSP 1 Score: 396.4 bits (1017), Expect = 3.1e-107
Identity = 203/204 (99.51%), Postives = 203/204 (99.51%), Query Frame = 1

Query: 1   MASQAATSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60
           MASQAATSI GNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA
Sbjct: 1   MASQAATSITGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA 180
           LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA
Sbjct: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA 180

Query: 181 EQQQNNKNEGKESRKKEEKVEVTA 205
           EQQQNNKNEGKESRKKEEKVEVTA
Sbjct: 181 EQQQNNKNEGKESRKKEEKVEVTA 204

BLAST of CSPI06G27420 vs. NCBI nr
Match: gi|659079262|ref|XP_008440163.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo])

HSP 1 Score: 374.8 bits (961), Expect = 9.7e-101
Identity = 192/204 (94.12%), Postives = 198/204 (97.06%), Query Frame = 1

Query: 1   MASQAATSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60
           MASQAA+SINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLAS+ISTVIQGKDKPTY 
Sbjct: 1   MASQAASSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASKISTVIQGKDKPTYT 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVG+LKERTLREQM RDPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGHLKERTLREQMNRDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA 180
           LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQK A
Sbjct: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKKA 180

Query: 181 EQQQNNKNEGKESRKKEEKVEVTA 205
           EQQ+N+K+E K SRKKEEKVEV A
Sbjct: 181 EQQENSKSERKGSRKKEEKVEVKA 204

BLAST of CSPI06G27420 vs. NCBI nr
Match: gi|567909623|ref|XP_006447125.1| (hypothetical protein CICLE_v10016747mg [Citrus clementina])

HSP 1 Score: 337.0 bits (863), Expect = 2.2e-89
Identity = 168/204 (82.35%), Postives = 188/204 (92.16%), Query Frame = 1

Query: 1   MASQAATSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60
           MA+QAAT+ +GNMKKALAGL+RINLEGLRWRVFDAKGQVLGRLASQ++TV+QGKDKPTYA
Sbjct: 1   MANQAATAFSGNMKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQVATVVQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120
           PNRDDGDMCIVLNAKDI VTGRKL  KVYYWHTGY+G+LKERTL+EQM RDPTE IRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDICVTGRKLKNKVYYWHTGYIGHLKERTLKEQMERDPTEAIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA 180
           LRMLP+NKLRDDRDRKLRIF G EHPFGDRPLEPY+MPPR VRE+RP+VRRAMIR QK A
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFPGSEHPFGDRPLEPYVMPPRRVRELRPRVRRAMIREQKKA 180

Query: 181 EQQQNNKNEGKESRKKEEKVEVTA 205
           E QQ+NK + +++RKKE + EVTA
Sbjct: 181 EMQQSNK-DMRKNRKKEVEAEVTA 203

BLAST of CSPI06G27420 vs. NCBI nr
Match: gi|590601607|ref|XP_007019643.1| (Ribosomal protein L13 family protein [Theobroma cacao])

HSP 1 Score: 332.0 bits (850), Expect = 7.2e-88
Identity = 164/205 (80.00%), Postives = 187/205 (91.22%), Query Frame = 1

Query: 1   MASQAA-TSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTY 60
           MA+QAA T+ NGN+KKALAGL+RINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKP Y
Sbjct: 1   MATQAAATTFNGNLKKALAGLRRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPIY 60

Query: 61  APNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKA 120
           APNRDDGDMCIV+NAKD+ VTGRKLT K YYWHTGYVGNLKER+L++QM +DPTEVIRKA
Sbjct: 61  APNRDDGDMCIVINAKDVCVTGRKLTDKFYYWHTGYVGNLKERSLKDQMAKDPTEVIRKA 120

Query: 121 VLRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKM 180
           VLRMLP+NKLRDDRDRKLRIFA  EHPFGDRPL+PY+MPPR VREMRP+ RRA+IRAQK 
Sbjct: 121 VLRMLPRNKLRDDRDRKLRIFANSEHPFGDRPLKPYVMPPRTVREMRPRARRALIRAQKK 180

Query: 181 AEQQQNNKNEGKESRKKEEKVEVTA 205
           AE+Q+   N+ ++ ++KE K+EVTA
Sbjct: 181 AEEQEQGGNQSRKGKRKEAKMEVTA 205

BLAST of CSPI06G27420 vs. NCBI nr
Match: gi|645246260|ref|XP_008229271.1| (PREDICTED: 50S ribosomal protein L13, chloroplastic [Prunus mume])

HSP 1 Score: 330.5 bits (846), Expect = 2.1e-87
Identity = 163/204 (79.90%), Postives = 187/204 (91.67%), Query Frame = 1

Query: 1   MASQAATSINGNMKKALAGLKRINLEGLRWRVFDAKGQVLGRLASQISTVIQGKDKPTYA 60
           MASQAATS NGN+KKALAGL+RI+L+GLRW+VFDAKGQVLGRLASQISTVIQGKDKPTYA
Sbjct: 1   MASQAATSFNGNLKKALAGLRRIDLDGLRWKVFDAKGQVLGRLASQISTVIQGKDKPTYA 60

Query: 61  PNRDDGDMCIVLNAKDIAVTGRKLTKKVYYWHTGYVGNLKERTLREQMTRDPTEVIRKAV 120
           PNRDDGDMCIVLNAKD+ VTGRKLT KVY+WHTGY+G+LKERTL++QM +DPTEVIRKAV
Sbjct: 61  PNRDDGDMCIVLNAKDVCVTGRKLTDKVYHWHTGYIGHLKERTLKDQMAKDPTEVIRKAV 120

Query: 121 LRMLPKNKLRDDRDRKLRIFAGDEHPFGDRPLEPYIMPPRNVREMRPQVRRAMIRAQKMA 180
           LRMLP+NKLRDDRDRKLRIF G EHPFGDRPLEPY+MPPR VREMRP+ RRAM+RAQK A
Sbjct: 121 LRMLPRNKLRDDRDRKLRIFVGGEHPFGDRPLEPYLMPPRQVREMRPRTRRAMVRAQKKA 180

Query: 181 EQQQNNKNEGKESRKKEEKVEVTA 205
           EQQ+ + N+ +  ++K ++ EV A
Sbjct: 181 EQQKQDVNDPRRGKRK-DRPEVNA 203

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
RL13_RUBXD5.6e-3249.6150S ribosomal protein L13 OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16... [more]
RL13_AQUAE2.4e-3051.5950S ribosomal protein L13 OS=Aquifex aeolicus (strain VF5) GN=rplM PE=3 SV=1[more]
RL13_CHLAD6.9e-3050.3950S ribosomal protein L13 OS=Chloroflexus aggregans (strain MD-66 / DSM 9485) GN... [more]
RL13_PEPD69.0e-3052.9950S ribosomal protein L13 OS=Peptoclostridium difficile (strain 630) GN=rplM PE=... [more]
RL13_CHLSY1.2e-2949.6150S ribosomal protein L13 OS=Chloroflexus aurantiacus (strain ATCC 29364 / DSM 6... [more]
Match NameE-valueIdentityDescription
A0A0A0KL19_CUCSA2.2e-10799.51Uncharacterized protein OS=Cucumis sativus GN=Csa_6G487720 PE=3 SV=1[more]
A0A067EP51_CITSI1.6e-8982.35Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g028816mg PE=3 SV=1[more]
V4U8B9_9ROSI1.6e-8982.35Uncharacterized protein OS=Citrus clementina GN=CICLE_v10016747mg PE=3 SV=1[more]
A0A061FIY2_THECC5.0e-8880.00Ribosomal protein L13 family protein OS=Theobroma cacao GN=TCM_035802 PE=3 SV=1[more]
M5XDK1_PRUPE3.3e-8779.90Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa011613mg PE=3 SV=1[more]
Match NameE-valueIdentityDescription
AT3G01790.11.8e-8174.75 Ribosomal protein L13 family protein[more]
AT1G78630.12.2e-1837.04 Ribosomal protein L13 family protein[more]
Match NameE-valueIdentityDescription
gi|778718104|ref|XP_011657807.1|3.1e-10799.51PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis sativus][more]
gi|659079262|ref|XP_008440163.1|9.7e-10194.12PREDICTED: 50S ribosomal protein L13, chloroplastic [Cucumis melo][more]
gi|567909623|ref|XP_006447125.1|2.2e-8982.35hypothetical protein CICLE_v10016747mg [Citrus clementina][more]
gi|590601607|ref|XP_007019643.1|7.2e-8880.00Ribosomal protein L13 family protein [Theobroma cacao][more]
gi|645246260|ref|XP_008229271.1|2.1e-8779.90PREDICTED: 50S ribosomal protein L13, chloroplastic [Prunus mume][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005822Ribosomal_L13
IPR005823Ribosomal_L13_bac-type
IPR005822Ribosomal_L13
IPR005823Ribosomal_L13_bac-type
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO:0006412translation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006354 DNA-templated transcription, elongation
cellular_component GO:0005840 ribosome
molecular_function GO:0003735 structural constituent of ribosome

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G27420.2CSPI06G27420.2mRNA
CSPI06G27420.1CSPI06G27420.1mRNA


Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005822Ribosomal protein L13GENE3DG3DSA:3.90.1180.10coord: 29..149
score: 1.8
IPR005822Ribosomal protein L13HAMAPMF_01366Ribosomal_L13coord: 30..153
score: 26
IPR005822Ribosomal protein L13PIRPIRSF002181RPL13p_RPL13Aa_RPL16e_RPL13ocoord: 13..198
score: 1.8
IPR005822Ribosomal protein L13PANTHERPTHR11545RIBOSOMAL PROTEIN L13coord: 10..175
score: 2.5
IPR005822Ribosomal protein L13PFAMPF00572Ribosomal_L13coord: 29..147
score: 6.0
IPR005822Ribosomal protein L13unknownSSF52161Ribosomal protein L13coord: 29..151
score: 3.92
IPR005823Ribosomal protein L13, bacterial-typeTIGRFAMsTIGR01066TIGR01066coord: 29..147
score: 3.7
NoneNo IPR availableunknownCoilCoilcoord: 179..199
scor

The following gene(s) are paralogous to this gene:

None