Cla97C01G013420 (gene) Watermelon (97103) v2

Overview
NameCla97C01G013420
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionprotein PXR1
LocationCla97Chr01 : 27252096 .. 27252383 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTAAGGTGGAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGAAGATGATGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAAATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAA

mRNA sequence

ATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTAAGGTGGAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGAAGATGATGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAAATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAA

Coding sequence (CDS)

ATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTAAGGTGGAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGAAGATGATGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAAATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAA

Protein sequence

MGETSEEKQESKVEKEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPSS
Homology
[Close]
BLAST of Cla97C01G013420 vs. NCBI nr
Match: XP_008437610.1 (PREDICTED: protein PXR1 [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 7.6e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 67 AKMQALAVKKEEILKLLHEAEHNAPPPS 95
          AKMQALAVKKEEILKLLHEAE N PPPS
Sbjct: 59 AKMQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]
BLAST of Cla97C01G013420 vs. TrEMBL
Match: tr|A0A1S3AV24|A0A1S3AV24_CUCME (protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0 

Query: 67 AKMQALAVKKEEILKLLHEAEHNAPPPS 95
          AKMQALAVKKEEILKLLHEAE N PPPS
Sbjct: 59 AKMQALAVKKEEILKLLHEAEQNPPPPS 86

The following BLAST results are available for this feature:
BLAST of Cla97C01G013420 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008437610.17.6e-0492.86PREDICTED: protein PXR1 [Cucumis melo][more]
BLAST of Cla97C01G013420 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A1S3AV24|A0A1S3AV24_CUCME5.1e-0492.86protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1[more]
BLAST of Cla97C01G013420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C01G013420 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009827 plant-type cell wall modification
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C01G013420.1Cla97C01G013420.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 28..48
NoneNo IPR availableCOILSCoilCoilcoord: 62..89
NoneNo IPR availableCOILSCoilCoilcoord: 1..26
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..64
NoneNo IPR availablePANTHERPTHR36812FAMILY NOT NAMEDcoord: 6..92
NoneNo IPR availablePANTHERPTHR36812:SF2SUBFAMILY NOT NAMEDcoord: 6..92

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C01G013420Cla008341Watermelon (97103) v1wmwmbB244
Cla97C01G013420Csa1G045530Cucumber (Chinese Long) v2cuwmbB010
Cla97C01G013420MELO3C002207Melon (DHL92) v3.5.1mewmbB133
Cla97C01G013420ClCG01G014400Watermelon (Charleston Gray)wcgwmbB089
Cla97C01G013420CSPI01G07950Wild cucumber (PI 183967)cpiwmbB010
Cla97C01G013420CmoCh13G009580Cucurbita moschata (Rifu)cmowmbB191
Cla97C01G013420CsGy1G007760Cucumber (Gy14) v2cgybwmbB010
Cla97C01G013420MELO3C002207.2Melon (DHL92) v3.6.1medwmbB125
Cla97C01G013420Carg07719Silver-seed gourdcarwmbB1057
Cla97C01G013420Bhi08G001167Wax gourdwgowmbB457
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C01G013420Watermelon (97103) v2wmbwmbB026
Cla97C01G013420Watermelon (97103) v2wmbwmbB031
Cla97C01G013420Watermelon (97103) v2wmbwmbB043
Cla97C01G013420Silver-seed gourdcarwmbB0263
Cla97C01G013420Silver-seed gourdcarwmbB0378
Cla97C01G013420Silver-seed gourdcarwmbB0516
Cla97C01G013420Silver-seed gourdcarwmbB0637
Cla97C01G013420Silver-seed gourdcarwmbB0871
Cla97C01G013420Cucumber (Gy14) v2cgybwmbB005
Cla97C01G013420Cucumber (Gy14) v2cgybwmbB325
Cla97C01G013420Cucumber (Gy14) v2cgybwmbB326
Cla97C01G013420Cucumber (Gy14) v1cgywmbB118
Cla97C01G013420Cucumber (Gy14) v1cgywmbB265
Cla97C01G013420Cucumber (Gy14) v1cgywmbB362
Cla97C01G013420Cucumber (Gy14) v1cgywmbB494
Cla97C01G013420Cucurbita maxima (Rimu)cmawmbB053
Cla97C01G013420Cucurbita maxima (Rimu)cmawmbB093
Cla97C01G013420Cucurbita maxima (Rimu)cmawmbB207
Cla97C01G013420Cucurbita maxima (Rimu)cmawmbB399
Cla97C01G013420Cucurbita maxima (Rimu)cmawmbB708
Cla97C01G013420Cucurbita moschata (Rifu)cmowmbB040
Cla97C01G013420Cucurbita moschata (Rifu)cmowmbB079
Cla97C01G013420Cucurbita moschata (Rifu)cmowmbB383
Cla97C01G013420Wild cucumber (PI 183967)cpiwmbB004
Cla97C01G013420Wild cucumber (PI 183967)cpiwmbB357
Cla97C01G013420Wild cucumber (PI 183967)cpiwmbB355
Cla97C01G013420Cucumber (Chinese Long) v3cucwmbB004
Cla97C01G013420Cucumber (Chinese Long) v3cucwmbB009
Cla97C01G013420Cucumber (Chinese Long) v3cucwmbB357
Cla97C01G013420Cucumber (Chinese Long) v3cucwmbB358
Cla97C01G013420Cucumber (Chinese Long) v2cuwmbB004
Cla97C01G013420Cucumber (Chinese Long) v2cuwmbB342
Cla97C01G013420Cucumber (Chinese Long) v2cuwmbB343
Cla97C01G013420Bottle gourd (USVL1VR-Ls)lsiwmbB158
Cla97C01G013420Bottle gourd (USVL1VR-Ls)lsiwmbB161
Cla97C01G013420Bottle gourd (USVL1VR-Ls)lsiwmbB261
Cla97C01G013420Bottle gourd (USVL1VR-Ls)lsiwmbB357
Cla97C01G013420Melon (DHL92) v3.6.1medwmbB039
Cla97C01G013420Melon (DHL92) v3.6.1medwmbB221
Cla97C01G013420Melon (DHL92) v3.5.1mewmbB011
Cla97C01G013420Melon (DHL92) v3.5.1mewmbB043
Cla97C01G013420Melon (DHL92) v3.5.1mewmbB236
Cla97C01G013420Watermelon (Charleston Gray)wcgwmbB256
Cla97C01G013420Watermelon (Charleston Gray)wcgwmbB217
Cla97C01G013420Watermelon (97103) v1wmwmbB007
Cla97C01G013420Watermelon (97103) v1wmwmbB196
Cla97C01G013420Watermelon (97103) v1wmwmbB388
Cla97C01G013420Wax gourdwgowmbB512
Cla97C01G013420Wax gourdwgowmbB624