Cla97C01G013420.1 (mRNA) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C01G013420.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	protein PXR1
Location	Cla97Chr01 : 27252096 .. 27252383 (-)
Sequence length	288

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTAAGGTGGAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGAAGATGATGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAAATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAA

mRNA sequence

ATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTAAGGTGGAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGAAGATGATGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAAATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAA

Coding sequence (CDS)

ATGGGAGAAACCTCAGAAGAGAAGCAGGAGAGTAAGGTGGAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGAAGATGATGATGAGAAGAAGAAGGAAAAGAAAGAGAAGAAGAAGAAAGAGAAAGAGCCTGCAGATAAGAAAGACCCATCAAAACTCAGACAGAAGCTTGAGAAGCTTGAAGCCAAAATGCAAGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAACTGCTCCATGAAGCTGAACACAATGCTCCACCACCTTCCTCTTAA

Protein sequence

MGETSEEKQESKVEKEKKEKKDKEKHGEEEDDDEKKKEKKEKKKKEKEPADKKDPSKLRQKLEKLEAKMQALAVKKEEILKLLHEAEHNAPPPSS

Homology

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BLAST of Cla97C01G013420.1 vs. NCBI nr
Match: XP_008437610.1 (PREDICTED: protein PXR1 [Cucumis melo])

HSP 1 Score: 52.8 bits (125), Expect = 7.6e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 67 AKMQALAVKKEEILKLLHEAEHNAPPPS 95
          AKMQALAVKKEEILKLLHEAE N PPPS
Sbjct: 59 AKMQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]

BLAST of Cla97C01G013420.1 vs. TrEMBL
Match: tr|A0A1S3AV24|A0A1S3AV24_CUCME (protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 5.1e-04
Identity = 26/28 (92.86%), Postives = 26/28 (92.86%), Query Frame = 0


Query: 67 AKMQALAVKKEEILKLLHEAEHNAPPPS 95
          AKMQALAVKKEEILKLLHEAE N PPPS
Sbjct: 59 AKMQALAVKKEEILKLLHEAEQNPPPPS 86

The following BLAST results are available for this feature:

BLAST of Cla97C01G013420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008437610.1	7.6e-04	92.86	PREDICTED: protein PXR1 [Cucumis melo]	[more]

BLAST of Cla97C01G013420.1 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3AV24\|A0A1S3AV24_CUCME	5.1e-04	92.86	protein PXR1 OS=Cucumis melo OX=3656 GN=LOC103482967 PE=4 SV=1	[more]

BLAST of Cla97C01G013420.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C01G013420.1 vs. TAIR10


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla97C01G013420	Cla97C01G013420	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G013420.1.CDS.1	Cla97C01G013420.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla97C01G013420.1.exon.1	Cla97C01G013420.1.exon.1	exon

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla97C01G013420.1	Cla97C01G013420.1-protein	polypeptide

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 28..48
None	No IPR available	COILS	Coil	Coil	coord: 62..89
None	No IPR available	COILS	Coil	Coil	coord: 1..26
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..64
None	No IPR available	PANTHER	PTHR36812	FAMILY NOT NAMED	coord: 6..92
None	No IPR available	PANTHER	PTHR36812:SF2	SUBFAMILY NOT NAMED	coord: 6..92