CSPI01G07950 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI01G07950
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionAt5g62750
LocationChr1 : 5028278 .. 5028746 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
CATAAACCTAGTATCAAAGTGGTAATTCTTTTAACGGATTTCTAGTTTTAGAGTAGTTTTGAAATGTTAATGTAAAGTTAAATGGAAAAGGATAAAGTTTAATTATAATTTAGCTAATATGAAAGTGAGTCATCTATAGGTAAAACATCAGTAACACGTTTTAGAACGGTTGGAATGTTTGACAGATTAAATAATGGGAGAAACGTCAGAAGAGAAGCACGAGGGTGAGGTCGAGAAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGGAGAAGATGAAGAGAAGAAGAAGAAGAAGAAGAAAGAGAAAGACCCTGCAGATAAGAAAGATCCTACAAAACTAAGACAAAAGCTTGAGAAGCTTGAAGTCAAAATGCAGGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAATTGCTCCATGAAGCTGAACAGAATCCACCACCTTCCTCTTGA

mRNA sequence

ATGGGAGAAACGTCAGAAGAGAAGCACGAGGGTGAGGTCGAGAAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGGAGAAGATGAAGAGAAGAAGAAGAAGAAGAAGAAAGAGAAAGACCCTGCAGATAAGAAAGATCCTACAAAACTAAGACAAAAGCTTGAGAAGCTTGAAGTCAAAATGCAGGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAATTGCTCCATGAAGCTGAACAGAATCCACCACCTTCCTCTTGA

Coding sequence (CDS)

ATGGGAGAAACGTCAGAAGAGAAGCACGAGGGTGAGGTCGAGAAGAAGGAGAAGAAGGAGAAGAAGGATAAAGAGAAACATGGAGAAGAAGGAGAAGATGAAGAGAAGAAGAAGAAGAAGAAGAAAGAGAAAGACCCTGCAGATAAGAAAGATCCTACAAAACTAAGACAAAAGCTTGAGAAGCTTGAAGTCAAAATGCAGGCTTTGGCTGTCAAGAAAGAAGAGATCTTGAAATTGCTCCATGAAGCTGAACAGAATCCACCACCTTCCTCTTGA
Homology
[Close]
BLAST of CSPI01G07950 vs. TrEMBL
Match: A0A0A0LQQ8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045530 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 1.8e-32
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60
          MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE
Sbjct: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60

Query: 61 KLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
          KLEVKMQALAVKKEEILKLLHEAEQNPPPSS
Sbjct: 61 KLEVKMQALAVKKEEILKLLHEAEQNPPPSS 91

[Close]
BLAST of CSPI01G07950 vs. TrEMBL
Match: A0A151S7C0_CAJCA (Uncharacterized protein OS=Cajanus cajan GN=KK1_027527 PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.4e-08
Identity = 53/94 (56.38%), Postives = 68/94 (72.34%), Query Frame = 1 

Query: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60
          MG T E+KHEGE E+ +K++K  +E  G+E   E+KK K+KKEK+P DK DPTKL+QKLE
Sbjct: 1  MGGTEEDKHEGEAEEHKKEKKHKEEGDGKEESKEKKKGKEKKEKNPEDKNDPTKLKQKLE 60

Query: 61 KLEVKMQALAVKKEEILKLLHEAEQN---PPPSS 92
          KLE K+QAL  K+EE+LKL  E   N   PP +S
Sbjct: 61 KLETKIQALVTKREELLKLFQEVVANSSAPPVAS 94

[Close]
BLAST of CSPI01G07950 vs. TrEMBL
Match: A0A0B2QCP2_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_012296 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-08
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 2  GETSEEKHEGEVEKKEKKEKKDK-EKHGEEGEDEEKKKK-----KKKEKDPADKKDPTKL 61
          G    +KHEGEVEK+ KKEKK+K E  GEE ++++K+KK     +KKEK+P DKKDP  L
Sbjct: 3  GAEENDKHEGEVEKEHKKEKKEKAEDAGEESKEKKKEKKNKEGKEKKEKNPEDKKDPAIL 62

Query: 62 RQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
          +QKLEKL+ KMQAL  K+EEILKLL E EQ    SS
Sbjct: 63 KQKLEKLDSKMQALQTKREEILKLLQEVEQGAANSS 98

[Close]
BLAST of CSPI01G07950 vs. TrEMBL
Match: I1KCP6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_06G190500 PE=4 SV=2)

HSP 1 Score: 66.6 bits (161), Expect = 1.8e-08
Identity = 57/96 (59.38%), Postives = 70/96 (72.92%), Query Frame = 1 

Query: 2  GETSEEKHEGEVEKKEKKEKKDK-EKHGEEGEDEEKKKK-----KKKEKDPADKKDPTKL 61
          G    +KHEGEVEK+ KKEKK+K E  GEE ++++K+KK     +KKEK+P DKKDP  L
Sbjct: 3  GAEENDKHEGEVEKEHKKEKKEKAEDAGEESKEKKKEKKNKEGKEKKEKNPEDKKDPAIL 62

Query: 62 RQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
          +QKLEKL+ KMQAL  K+EEILKLL E EQ    SS
Sbjct: 63 KQKLEKLDSKMQALQTKREEILKLLQEVEQGAANSS 98

[Close]
BLAST of CSPI01G07950 vs. TrEMBL
Match: D7MMV8_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_496457 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 4.0e-08
Identity = 56/106 (52.83%), Postives = 72/106 (67.92%), Query Frame = 1 

Query: 2   GETSEEKHEGEVEKKEKKEKK-----------DKEKHGEEGEDEEKKKKK-----KKEKD 61
           G+  EE+H  + EK EKKEKK           DK   GEEGED+EKK KK     KKEK+
Sbjct: 12  GDNKEEEH-NKAEKTEKKEKKKDKDKKDKNEDDKNGGGEEGEDQEKKSKKKDKKAKKEKN 71

Query: 62  PADKKDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
           P DKKDP KL+ KL+K+E K+QA+ +KK+EI+KL+HEAEQ  P ++
Sbjct: 72  PEDKKDPEKLKMKLQKIEEKIQAMVLKKDEIVKLIHEAEQAKPSTA 116

[Close]
BLAST of CSPI01G07950 vs. TAIR10
Match: AT5G62750.1 (AT5G62750.1 unknown protein)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-10
Identity = 57/115 (49.57%), Postives = 73/115 (63.48%), Query Frame = 1 

Query: 1   MGETSE--------EKHEGEVEKKEKKEKK-----------DKEKHGEEGEDEEKKKKKK 60
           MGET E        E+   + EK EKKEKK           DK   GEEGED+EKK KKK
Sbjct: 1   MGETEEKVKNHDNKEEEHNKAEKAEKKEKKKDKDKKDKNEDDKNGGGEEGEDQEKKSKKK 60

Query: 61  -----KEKDPADKKDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
                KEK+P DKKDP KL+ KL+K+E K+QA+ +KK+EI+KL+H+AEQ  P ++
Sbjct: 61  DKKAKKEKNPEDKKDPEKLKMKLQKIEEKIQAMVLKKDEIVKLIHDAEQAKPSTA 115

[Close]
BLAST of CSPI01G07950 vs. NCBI nr
Match: gi|700209159|gb|KGN64255.1| (hypothetical protein Csa_1G045530 [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 2.5e-32
Identity = 91/91 (100.00%), Postives = 91/91 (100.00%), Query Frame = 1 

Query: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60
          MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE
Sbjct: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60

Query: 61 KLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
          KLEVKMQALAVKKEEILKLLHEAEQNPPPSS
Sbjct: 61 KLEVKMQALAVKKEEILKLLHEAEQNPPPSS 91

[Close]
BLAST of CSPI01G07950 vs. NCBI nr
Match: gi|659067086|ref|XP_008437610.1| (PREDICTED: protein PXR1 [Cucumis melo])

HSP 1 Score: 120.2 bits (300), Expect = 1.9e-24
Identity = 82/91 (90.11%), Postives = 84/91 (92.31%), Query Frame = 1 

Query: 1  MGETSEEKHEGEVEKKEKKEKKDKEKHGEEGEDEEKKKKKKKEKDPADKKDPTKLRQKLE 60
          MGETSEEKHEG+VEKKEKK   DKEKHGE GEDEE KKKKKKEK+PADKKDPTKLRQKLE
Sbjct: 1  MGETSEEKHEGKVEKKEKK---DKEKHGE-GEDEE-KKKKKKEKNPADKKDPTKLRQKLE 60

Query: 61 KLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
          KLE KMQALAVKKEEILKLLHEAEQNPPP S
Sbjct: 61 KLEAKMQALAVKKEEILKLLHEAEQNPPPPS 86

[Close]
BLAST of CSPI01G07950 vs. NCBI nr
Match: gi|727626310|ref|XP_010483987.1| (PREDICTED: nucleolar protein 58-like [Camelina sativa])

HSP 1 Score: 70.9 bits (172), Expect = 1.3e-09
Identity = 59/105 (56.19%), Postives = 75/105 (71.43%), Query Frame = 1 

Query: 2   GETSEEKHEGEVEKKEKKEKKDKEKH----------GEEGEDEEKKKKKK-----KEKDP 61
           G+  EE+H  +VEK EKKEKKDK+K           GEEGED+EKK KKK     KEK+P
Sbjct: 12  GDNKEEEHN-KVEKTEKKEKKDKDKKDKHEDDKNGGGEEGEDQEKKSKKKDKKAKKEKNP 71

Query: 62  ADKKDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
            DKKDP KL+ KL+K+E K+QA+ +KK+EILKL+HEAEQ  P ++
Sbjct: 72  EDKKDPQKLKTKLQKIEDKIQAMVLKKDEILKLIHEAEQAKPSTA 115

[Close]
BLAST of CSPI01G07950 vs. NCBI nr
Match: gi|727541075|ref|XP_010444127.1| (PREDICTED: nucleolar protein 58-like [Camelina sativa])

HSP 1 Score: 70.1 bits (170), Expect = 2.3e-09
Identity = 59/105 (56.19%), Postives = 74/105 (70.48%), Query Frame = 1 

Query: 2   GETSEEKHEGEVEKKEKKEKKDKEKH----------GEEGEDEEKKKKKK-----KEKDP 61
           G+  EE+H  +VEK EKKEKKDK+K           GEEGED+EKK KKK     KEK+P
Sbjct: 12  GDNKEEEHN-KVEKTEKKEKKDKDKKDKHEDDKNGGGEEGEDQEKKSKKKDKKAKKEKNP 71

Query: 62  ADKKDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
            DKKDP KL+ KL+K+E K+QA+  KK+EILKL+HEAEQ  P ++
Sbjct: 72  EDKKDPQKLKTKLQKIEDKIQAMVFKKDEILKLIHEAEQAKPSTA 115

[Close]
BLAST of CSPI01G07950 vs. NCBI nr
Match: gi|727426270|ref|XP_010459278.1| (PREDICTED: nucleolar protein 58-like [Camelina sativa])

HSP 1 Score: 69.3 bits (168), Expect = 3.9e-09
Identity = 57/102 (55.88%), Postives = 74/102 (72.55%), Query Frame = 1 

Query: 2   GETSEEKHEGEVEKKEKKEKKDKEKH-------GEEGEDEEKKKKKK-----KEKDPADK 61
           G+  EE+H  +VEK EKK+K  K+KH       GEEGED+EKK KKK     KEK+P DK
Sbjct: 12  GDNKEEEHS-KVEKTEKKDKDKKDKHEDDKDGGGEEGEDQEKKSKKKDKKAKKEKNPEDK 71

Query: 62  KDPTKLRQKLEKLEVKMQALAVKKEEILKLLHEAEQNPPPSS 92
           KDP KL+ KL+K+E K+QA+ +KK+EILKL+HEAEQ  P ++
Sbjct: 72  KDPQKLKTKLQKIEDKIQAMVLKKDEILKLIHEAEQAKPSTA 112

The following BLAST results are available for this feature:
BLAST of CSPI01G07950 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI01G07950 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LQQ8_CUCSA1.8e-32100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045530 PE=4 SV=1[more]
A0A151S7C0_CAJCA1.4e-0856.38Uncharacterized protein OS=Cajanus cajan GN=KK1_027527 PE=4 SV=1[more]
A0A0B2QCP2_GLYSO1.8e-0859.38Uncharacterized protein OS=Glycine soja GN=glysoja_012296 PE=4 SV=1[more]
I1KCP6_SOYBN1.8e-0859.38Uncharacterized protein OS=Glycine max GN=GLYMA_06G190500 PE=4 SV=2[more]
D7MMV8_ARALL4.0e-0852.83Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA... [more]
BLAST of CSPI01G07950 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G62750.11.3e-1049.57 unknown protein[more]
BLAST of CSPI01G07950 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700209159|gb|KGN64255.1|2.5e-32100.00hypothetical protein Csa_1G045530 [Cucumis sativus][more]
gi|659067086|ref|XP_008437610.1|1.9e-2490.11PREDICTED: protein PXR1 [Cucumis melo][more]
gi|727626310|ref|XP_010483987.1|1.3e-0956.19PREDICTED: nucleolar protein 58-like [Camelina sativa][more]
gi|727541075|ref|XP_010444127.1|2.3e-0956.19PREDICTED: nucleolar protein 58-like [Camelina sativa][more]
gi|727426270|ref|XP_010459278.1|3.9e-0955.88PREDICTED: nucleolar protein 58-like [Camelina sativa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009827 plant-type cell wall modification
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI01G07950.1CSPI01G07950.1mRNA


InterPro
Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableunknownCoilCoilcoord: 59..86
scor
NoneNo IPR availablePANTHERPTHR36812FAMILY NOT NAMEDcoord: 6..86
score: 8.7

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI01G07950Cla008341Watermelon (97103) v1cpiwmB042
CSPI01G07950Csa1G045530Cucumber (Chinese Long) v2cpicuB000
CSPI01G07950MELO3C002207Melon (DHL92) v3.5.1cpimeB024
CSPI01G07950ClCG01G014400Watermelon (Charleston Gray)cpiwcgB024
CSPI01G07950Lsi02G003140Bottle gourd (USVL1VR-Ls)cpilsiB021
CSPI01G07950MELO3C002207.2Melon (DHL92) v3.6.1cpimedB023
CSPI01G07950Cla97C01G013420Watermelon (97103) v2cpiwmbB010
CSPI01G07950Bhi08G001167Wax gourdcpiwgoB028
CSPI01G07950CmoCh13G009580Cucurbita moschata (Rifu)cmocpiB204
CSPI01G07950Cp4.1LG09g10780Cucurbita pepo (Zucchini)cpecpiB025
CSPI01G07950CsGy1G007760Cucumber (Gy14) v2cgybcpiB001
CSPI01G07950Carg07719Silver-seed gourdcarcpiB1043
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI01G07950Melon (DHL92) v3.6.1cpimedB003
CSPI01G07950Melon (DHL92) v3.6.1cpimedB041
CSPI01G07950Cucumber (Gy14) v2cgybcpiB009
CSPI01G07950Cucumber (Gy14) v2cgybcpiB206
CSPI01G07950Cucumber (Gy14) v2cgybcpiB205
CSPI01G07950Silver-seed gourdcarcpiB0288
CSPI01G07950Silver-seed gourdcarcpiB0397
CSPI01G07950Silver-seed gourdcarcpiB0531
CSPI01G07950Silver-seed gourdcarcpiB0647
CSPI01G07950Cucumber (Chinese Long) v3cpicucB001
CSPI01G07950Cucumber (Chinese Long) v3cpicucB012
CSPI01G07950Cucumber (Chinese Long) v3cpicucB029
CSPI01G07950Cucumber (Chinese Long) v3cpicucB048
CSPI01G07950Cucumber (Chinese Long) v3cpicucB049
CSPI01G07950Watermelon (97103) v2cpiwmbB017
CSPI01G07950Watermelon (97103) v2cpiwmbB059
CSPI01G07950Watermelon (97103) v2cpiwmbB072
CSPI01G07950Watermelon (97103) v2cpiwmbB089
CSPI01G07950Wax gourdcpiwgoB069
CSPI01G07950Wax gourdcpiwgoB088
CSPI01G07950Cucurbita maxima (Rimu)cmacpiB394
CSPI01G07950Wild cucumber (PI 183967)cpicpiB002
CSPI01G07950Wild cucumber (PI 183967)cpicpiB035
CSPI01G07950Wild cucumber (PI 183967)cpicpiB036
CSPI01G07950Cucumber (Gy14) v1cgycpiB107
CSPI01G07950Cucumber (Gy14) v1cgycpiB232
CSPI01G07950Cucumber (Gy14) v1cgycpiB312
CSPI01G07950Cucumber (Gy14) v1cgycpiB425
CSPI01G07950Cucurbita maxima (Rimu)cmacpiB063
CSPI01G07950Cucurbita maxima (Rimu)cmacpiB093
CSPI01G07950Cucurbita maxima (Rimu)cmacpiB218
CSPI01G07950Cucurbita maxima (Rimu)cmacpiB235
CSPI01G07950Cucurbita maxima (Rimu)cmacpiB698
CSPI01G07950Cucurbita moschata (Rifu)cmocpiB056
CSPI01G07950Cucurbita moschata (Rifu)cmocpiB095
CSPI01G07950Cucurbita moschata (Rifu)cmocpiB222
CSPI01G07950Cucurbita moschata (Rifu)cmocpiB383
CSPI01G07950Cucurbita moschata (Rifu)cmocpiB689
CSPI01G07950Cucurbita moschata (Rifu)cmocpiB690
CSPI01G07950Cucumber (Chinese Long) v2cpicuB007
CSPI01G07950Cucumber (Chinese Long) v2cpicuB042
CSPI01G07950Cucumber (Chinese Long) v2cpicuB043
CSPI01G07950Melon (DHL92) v3.5.1cpimeB000
CSPI01G07950Melon (DHL92) v3.5.1cpimeB002
CSPI01G07950Melon (DHL92) v3.5.1cpimeB047
CSPI01G07950Melon (DHL92) v3.5.1cpimeB068
CSPI01G07950Watermelon (Charleston Gray)cpiwcgB001
CSPI01G07950Watermelon (Charleston Gray)cpiwcgB006
CSPI01G07950Watermelon (Charleston Gray)cpiwcgB063
CSPI01G07950Watermelon (Charleston Gray)cpiwcgB075
CSPI01G07950Watermelon (97103) v1cpiwmB000
CSPI01G07950Watermelon (97103) v1cpiwmB006
CSPI01G07950Watermelon (97103) v1cpiwmB036
CSPI01G07950Watermelon (97103) v1cpiwmB091
CSPI01G07950Cucurbita pepo (Zucchini)cpecpiB357
CSPI01G07950Cucurbita pepo (Zucchini)cpecpiB505
CSPI01G07950Cucurbita pepo (Zucchini)cpecpiB596
CSPI01G07950Cucurbita pepo (Zucchini)cpecpiB645
CSPI01G07950Bottle gourd (USVL1VR-Ls)cpilsiB028
CSPI01G07950Bottle gourd (USVL1VR-Ls)cpilsiB050
CSPI01G07950Bottle gourd (USVL1VR-Ls)cpilsiB066