Cla023358 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla023358
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr11 : 19967687 .. 19969005 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACGAGGTTGATGCTTTTCAAAGTGTAGAAGGCTACAAACCTCCAGCAGAGTTTGAGGAAGAGAAAAGGGAATTTCTTACTGATATTTCTTTGTCTGACTGCGCAGAGCTCTGGCTTATTCAATGGCCTTCTAATCAAGTAAGATATTATAAACTAATCTAGAAAAATATTATAGCTACCTGCAGTTTGGGAGAAATTAAAATGAAGAACCCATAAATGTACTTTTTTTTCATCCAAGATTGAAGTTTGTTACAGCCATTTTAAATGCTGTTTAACTTGAGAGGGATTTGTTATTTTTCTTCAATGGGTACTGTAGGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCATCCAGATGGACATTTGGGCAGCTTTCAGAGTTCATCTGGTAACTATCATTTTGTTGGTGATTTACATTTTTTTGTAAAGAAACATTGATGTTTGAAAATCACTAAATGATATAGTCCATGGAGTTACAACAAGCTATCCTAATTGTTTAAAAGGGAAGTGTACGACTACTCTTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTTGAATAAGAAACAACCATGTATATTCCAATGGAAAACAAAAGAACAATCCAAGGGCAAGGGGTTGAGAAGACCCTTTCCAGAGAGTTAATGAAGCAGAAAGATTAGAACTTTTACGCCAAGAAATATCATTACAAAAGGATTAAGACTCTTTGATTTCTTTCCTACCATAGCACCCAAAAGAAAGCACAAGATAGATGCAGCCACAAAAAAGCCTCTGTATTCTTGAACAGGTGACTCAAGAGAATGAAGTTGAGGTGTGTAGTAACTTCTTTAGGAAAATCCAAAACTATCCAAAAGCATCGCAAAGTTTACTCCAACATTTCCAGGTAAAAGAACAATGGAGGAACAGGTGATTTTGTGATTCATCATCAGTTCTGCACATAGAACACCACCCCAGAGATATGGCCGTATTAAACTTTTTTGAAGAACATCATTGGTGTTAATGGATGCCTTGTGAGCCAATTCCCATTTCTTGGGGTATTTGTCTTTCCATATCCTCTAGCCAAAGATGTCTCCAAAATGTTGTTTCTATCACCCATATTGGCTAAGAGAGGTTTTGTAGAAAAGTGTCCATCAGGATTGAGAGGCCATTTCCAAGCATCTATCGGTTGTGAGAGGGTGATCGGGGCTAAGACCATGTTGAGGTCTCAAAAGTTGTTATTGGCATTCTCGTCTTCACCCAAGATTGAGGTCTCAAAAATTGTGATTGGCATTCCAAGTCTATTTCACAGTGGCTGTTTTCCAGTGGGGTGA

mRNA sequence

ATGAGTAACGAGGTTGATGCTTTTCAAAGTGTAGAAGGCTACAAACCTCCAGCAGAGTTTGAGGAAGAGAAAAGGGAATTTCTTACTGATATTTCTTTGTCTGACTGCGCAGAGCTCTGGCTTATTCAATGGCCTTCTAATCAAGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCATCCAGATGGACATTTGGGCAGCTTTCAGAGTTCATCTGCCAAAGATGTCTCCAAAATGTTGTTTCTATCACCCATATTGGCTAAGAGAGGTTTTGTAGAAAAGTGTCCATCAGGATTGAGAGGCCATTTCCAAGCATCTATCGGTTGTGAGAGGGTGATCGGGGCTAAGACCATGTTGAGGTCTCAAAAGTTGTTATTGGCATTCTCGTCTTCACCCAAGATTGAGGTCTCAAAAATTGTGATTGGCATTCCAAGTCTATTTCACAGTGGCTGTTTTCCAGTGGGGTGA

Coding sequence (CDS)

ATGAGTAACGAGGTTGATGCTTTTCAAAGTGTAGAAGGCTACAAACCTCCAGCAGAGTTTGAGGAAGAGAAAAGGGAATTTCTTACTGATATTTCTTTGTCTGACTGCGCAGAGCTCTGGCTTATTCAATGGCCTTCTAATCAAGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCATCCAGATGGACATTTGGGCAGCTTTCAGAGTTCATCTGCCAAAGATGTCTCCAAAATGTTGTTTCTATCACCCATATTGGCTAAGAGAGGTTTTGTAGAAAAGTGTCCATCAGGATTGAGAGGCCATTTCCAAGCATCTATCGGTTGTGAGAGGGTGATCGGGGCTAAGACCATGTTGAGGTCTCAAAAGTTGTTATTGGCATTCTCGTCTTCACCCAAGATTGAGGTCTCAAAAATTGTGATTGGCATTCCAAGTCTATTTCACAGTGGCTGTTTTCCAGTGGGGTGA

Protein sequence

MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQSSSAKDVSKMLFLSPILAKRGFVEKCPSGLRGHFQASIGCERVIGAKTMLRSQKLLLAFSSSPKIEVSKIVIGIPSLFHSGCFPVG

Homology

[Close]

BLAST of Cla023358 vs. TrEMBL
Match: A0A0A0L047_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G629490 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-30
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA ++VEGYKPPAEFEE+KREFLTDISL+D  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSAK 77
          LHPDGH+GSFQ SS K
Sbjct: 61 LHPDGHMGSFQGSSGK 76

[Close]

BLAST of Cla023358 vs. TrEMBL
Match: W9SLQ0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019131 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 12 EGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQ 71
          E Y P  EFEE+ ++ L D+SL+D  ELWLIQWP NQ PDFDGQE +L+LH DG+LGSF+
Sbjct: 7  EAYMPSLEFEEDAKDPLVDLSLNDSTELWLIQWPKNQNPDFDGQELTLKLHHDGNLGSFK 66

Query: 72 SSSAKDVSKMLF 84
           SS K+   + F
Sbjct: 67 GSSGKEYDVVSF 78

[Close]

BLAST of Cla023358 vs. TrEMBL
Match: F6HJ73_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00220 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-16
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 2   SNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQL 61
           S  +DA    + YKPP EF E+ ++ L D+S++D  ELWLIQWP NQ PDFDGQE SL+L
Sbjct: 21  SEGMDAVSEAD-YKPPPEFIEDTKDSLVDLSMTDSKELWLIQWPVNQHPDFDGQELSLKL 80

Query: 62  HPDGHLGSFQSSSAKDVSKMLFLS 86
           H DG LG F+ SS K  + + F S
Sbjct: 81  HQDGQLGKFEGSSGKLYNVVSFAS 103

[Close]

BLAST of Cla023358 vs. TrEMBL
Match: K4CR14_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-16
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 14 YKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQSS 73
          YKPP+EFEE K++ L ++++SD  ELWLIQWP NQ P  DGQE SL+LH DGH+GSF+ S
Sbjct: 9  YKPPSEFEEVKKDSLVNLNISDSTELWLIQWPFNQHPGLDGQEVSLKLHHDGHIGSFEDS 68

Query: 74 SAK 77
          S K
Sbjct: 69 SGK 71

[Close]

BLAST of Cla023358 vs. TrEMBL
Match: A9PE50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12900g PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-16
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 5  VDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPD 64
          +D  + VEGYKP   FEE+ RE L DISLSD  ELWLIQWP N+ PDF+G+E SL L  D
Sbjct: 1  MDDVEEVEGYKPEPGFEEDSREPLADISLSDSTELWLIQWPINELPDFNGKELSLSLDQD 60

Query: 65 GHLGSFQSSSAK 77
          G LGSF++S  K
Sbjct: 61 GCLGSFEASPGK 72

[Close]

BLAST of Cla023358 vs. NCBI nr
Match: gi|449456619|ref|XP_004146046.1| (PREDICTED: mediator-associated protein 2 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-30
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA ++VEGYKPPAEFEE+KREFLTDISL+D  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSAK 77
          LHPDGH+GSFQ SS K
Sbjct: 61 LHPDGHMGSFQGSSGK 76

[Close]

BLAST of Cla023358 vs. NCBI nr
Match: gi|659127432|ref|XP_008463699.1| (PREDICTED: mediator-associated protein 2 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 4.0e-30
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA ++VEGYKPPAEFEE++REFLTDISL+D  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MSSEVDALKNVEGYKPPAEFEEDRREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSAK 77
          LHPDGH+GSFQ SS K
Sbjct: 61 LHPDGHMGSFQGSSGK 76

[Close]

BLAST of Cla023358 vs. NCBI nr
Match: gi|720085965|ref|XP_010243688.1| (PREDICTED: mediator-associated protein 2 [Nelumbo nucifera])

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 14 YKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQSS 73
          Y+PP EFEE  R+ L DISL+D  E WLIQWP NQ PDFDGQE +L+LH DG +GSF+ S
Sbjct: 8  YRPPPEFEENTRDPLVDISLTDSTEFWLIQWPHNQTPDFDGQEVTLKLHRDGRMGSFEGS 67

Query: 74 SAKDVSKMLFLS 86
          S K+   + F S
Sbjct: 68 SGKEYEVVSFAS 79

[Close]

BLAST of Cla023358 vs. NCBI nr
Match: gi|697128981|ref|XP_009618547.1| (PREDICTED: mediator-associated protein 2 [Nicotiana tomentosiformis])

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 14 YKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQSS 73
          YKPP EFEE K++ L +++L+D  ELWLIQWP NQ PDFDG+E SL+LH DGH+GSF+ S
Sbjct: 9  YKPPPEFEEVKKDSLINLNLADSTELWLIQWPLNQHPDFDGREVSLKLHHDGHMGSFEES 68

Query: 74 SAK 77
          S K
Sbjct: 69 SGK 71

[Close]

BLAST of Cla023358 vs. NCBI nr
Match: gi|703160999|ref|XP_010112677.1| (hypothetical protein L484_019131 [Morus notabilis])

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 12 EGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQ 71
          E Y P  EFEE+ ++ L D+SL+D  ELWLIQWP NQ PDFDGQE +L+LH DG+LGSF+
Sbjct: 7  EAYMPSLEFEEDAKDPLVDLSLNDSTELWLIQWPKNQNPDFDGQELTLKLHHDGNLGSFK 66

Query: 72 SSSAKDVSKMLF 84
           SS K+   + F
Sbjct: 67 GSSGKEYDVVSF 78

The following BLAST results are available for this feature:

BLAST of Cla023358 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L047_CUCSA	1.3e-30	84.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G629490 PE=4 SV=1	[more]
W9SLQ0_9ROSA	1.8e-16	58.33	Uncharacterized protein OS=Morus notabilis GN=L484_019131 PE=4 SV=1	[more]
F6HJ73_VITVI	3.0e-16	53.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00220 PE=4 SV=...	[more]
K4CR14_SOLLC	3.9e-16	63.49	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A9PE50_POPTR	3.9e-16	61.11	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12900g PE=2 SV=1	[more]

BLAST of Cla023358 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456619\|ref\|XP_004146046.1\|	1.8e-30	84.21	PREDICTED: mediator-associated protein 2 [Cucumis sativus]	[more]
gi\|659127432\|ref\|XP_008463699.1\|	4.0e-30	82.89	PREDICTED: mediator-associated protein 2 [Cucumis melo]	[more]
gi\|720085965\|ref\|XP_010243688.1\|	5.1e-17	59.72	PREDICTED: mediator-associated protein 2 [Nelumbo nucifera]	[more]
gi\|697128981\|ref\|XP_009618547.1\|	1.5e-16	65.08	PREDICTED: mediator-associated protein 2 [Nicotiana tomentosiformis]	[more]
gi\|703160999\|ref\|XP_010112677.1\|	2.5e-16	58.33	hypothetical protein L484_019131 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0009987	cellular process
biological_process	GO:0008150	biological_process
biological_process	GO:0044699	single-organism process
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0051604	protein maturation
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0000741	karyogamy
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0043170	macromolecule metabolic process
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005730	nucleolus
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla023358	Cla023358.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36407	FAMILY NOT NAMED	coord: 4..76 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla023358	Cla97C11G223830	Watermelon (97103) v2	wmwmbB358
Cla023358	Csa4G629490	Cucumber (Chinese Long) v2	cuwmB349
Cla023358	ClCG11G017800	Watermelon (Charleston Gray)	wcgwmB103
Cla023358	CSPI04G23220	Wild cucumber (PI 183967)	cpiwmB356
Cla023358	Cucsa.122900	Cucumber (Gy14) v1	cgywmB198
Cla023358	CmaCh01G012250	Cucurbita maxima (Rimu)	cmawmB463
Cla023358	CmaCh09G008440	Cucurbita maxima (Rimu)	cmawmB037
Cla023358	CmoCh01G012780	Cucurbita moschata (Rifu)	cmowmB457
Cla023358	CmoCh09G008380	Cucurbita moschata (Rifu)	cmowmB029
Cla023358	Lsi04G020460	Bottle gourd (USVL1VR-Ls)	lsiwmB333
Cla023358	Cp4.1LG02g01910	Cucurbita pepo (Zucchini)	cpewmB581
Cla023358	CsGy4G021600	Cucumber (Gy14) v2	cgybwmB326
Cla023358	Carg14711	Silver-seed gourd	carwmB0304
Cla023358	Carg17079	Silver-seed gourd	carwmB0160
Cla023358	CsaV3_4G033440	Cucumber (Chinese Long) v3	cucwmB367
Cla023358	Bhi09G002833	Wax gourd	wgowmB641

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla023358	Cucurbita maxima (Rimu)	cmawmB325
Cla023358	Melon (DHL92) v3.5.1	mewmB539
Cla023358	Watermelon (Charleston Gray)	wcgwmB394
Cla023358	Cucumber (Chinese Long) v2	cuwmB075
Cla023358	Cucurbita pepo (Zucchini)	cpewmB775
Cla023358	Melon (DHL92) v3.6.1	medwmB524
Cla023358	Watermelon (97103) v1	wmwmB114