Cla023358.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla023358
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr11 : 19967687 .. 19969005 (-)
Sequence length	474

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTAACGAGGTTGATGCTTTTCAAAGTGTAGAAGGCTACAAACCTCCAGCAGAGTTTGAGGAAGAGAAAAGGGAATTTCTTACTGATATTTCTTTGTCTGACTGCGCAGAGCTCTGGCTTATTCAATGGCCTTCTAATCAAGTAAGATATTATAAACTAATCTAGAAAAATATTATAGCTACCTGCAGTTTGGGAGAAATTAAAATGAAGAACCCATAAATGTACTTTTTTTTCATCCAAGATTGAAGTTTGTTACAGCCATTTTAAATGCTGTTTAACTTGAGAGGGATTTGTTATTTTTCTTCAATGGGTACTGTAGGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCATCCAGATGGACATTTGGGCAGCTTTCAGAGTTCATCTGGTAACTATCATTTTGTTGGTGATTTACATTTTTTTGTAAAGAAACATTGATGTTTGAAAATCACTAAATGATATAGTCCATGGAGTTACAACAAGCTATCCTAATTGTTTAAAAGGGAAGTGTACGACTACTCTTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTTGAATAAGAAACAACCATGTATATTCCAATGGAAAACAAAAGAACAATCCAAGGGCAAGGGGTTGAGAAGACCCTTTCCAGAGAGTTAATGAAGCAGAAAGATTAGAACTTTTACGCCAAGAAATATCATTACAAAAGGATTAAGACTCTTTGATTTCTTTCCTACCATAGCACCCAAAAGAAAGCACAAGATAGATGCAGCCACAAAAAAGCCTCTGTATTCTTGAACAGGTGACTCAAGAGAATGAAGTTGAGGTGTGTAGTAACTTCTTTAGGAAAATCCAAAACTATCCAAAAGCATCGCAAAGTTTACTCCAACATTTCCAGGTAAAAGAACAATGGAGGAACAGGTGATTTTGTGATTCATCATCAGTTCTGCACATAGAACACCACCCCAGAGATATGGCCGTATTAAACTTTTTTGAAGAACATCATTGGTGTTAATGGATGCCTTGTGAGCCAATTCCCATTTCTTGGGGTATTTGTCTTTCCATATCCTCTAGCCAAAGATGTCTCCAAAATGTTGTTTCTATCACCCATATTGGCTAAGAGAGGTTTTGTAGAAAAGTGTCCATCAGGATTGAGAGGCCATTTCCAAGCATCTATCGGTTGTGAGAGGGTGATCGGGGCTAAGACCATGTTGAGGTCTCAAAAGTTGTTATTGGCATTCTCGTCTTCACCCAAGATTGAGGTCTCAAAAATTGTGATTGGCATTCCAAGTCTATTTCACAGTGGCTGTTTTCCAGTGGGGTGA

mRNA sequence

ATGAGTAACGAGGTTGATGCTTTTCAAAGTGTAGAAGGCTACAAACCTCCAGCAGAGTTTGAGGAAGAGAAAAGGGAATTTCTTACTGATATTTCTTTGTCTGACTGCGCAGAGCTCTGGCTTATTCAATGGCCTTCTAATCAAGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCATCCAGATGGACATTTGGGCAGCTTTCAGAGTTCATCTGCCAAAGATGTCTCCAAAATGTTGTTTCTATCACCCATATTGGCTAAGAGAGGTTTTGTAGAAAAGTGTCCATCAGGATTGAGAGGCCATTTCCAAGCATCTATCGGTTGTGAGAGGGTGATCGGGGCTAAGACCATGTTGAGGTCTCAAAAGTTGTTATTGGCATTCTCGTCTTCACCCAAGATTGAGGTCTCAAAAATTGTGATTGGCATTCCAAGTCTATTTCACAGTGGCTGTTTTCCAGTGGGGTGA

Coding sequence (CDS)

ATGAGTAACGAGGTTGATGCTTTTCAAAGTGTAGAAGGCTACAAACCTCCAGCAGAGTTTGAGGAAGAGAAAAGGGAATTTCTTACTGATATTTCTTTGTCTGACTGCGCAGAGCTCTGGCTTATTCAATGGCCTTCTAATCAAGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCATCCAGATGGACATTTGGGCAGCTTTCAGAGTTCATCTGCCAAAGATGTCTCCAAAATGTTGTTTCTATCACCCATATTGGCTAAGAGAGGTTTTGTAGAAAAGTGTCCATCAGGATTGAGAGGCCATTTCCAAGCATCTATCGGTTGTGAGAGGGTGATCGGGGCTAAGACCATGTTGAGGTCTCAAAAGTTGTTATTGGCATTCTCGTCTTCACCCAAGATTGAGGTCTCAAAAATTGTGATTGGCATTCCAAGTCTATTTCACAGTGGCTGTTTTCCAGTGGGGTGA

Protein sequence

MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQSSSAKDVSKMLFLSPILAKRGFVEKCPSGLRGHFQASIGCERVIGAKTMLRSQKLLLAFSSSPKIEVSKIVIGIPSLFHSGCFPVG

Homology

[Close]

BLAST of Cla023358 vs. TrEMBL
Match: A0A0A0L047_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G629490 PE=4 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 1.3e-30
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA ++VEGYKPPAEFEE+KREFLTDISL+D  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSAK 77
          LHPDGH+GSFQ SS K
Sbjct: 61 LHPDGHMGSFQGSSGK 76

[Close]

BLAST of Cla023358 vs. TrEMBL
Match: W9SLQ0_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_019131 PE=4 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 1.8e-16
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 12 EGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQ 71
          E Y P  EFEE+ ++ L D+SL+D  ELWLIQWP NQ PDFDGQE +L+LH DG+LGSF+
Sbjct: 7  EAYMPSLEFEEDAKDPLVDLSLNDSTELWLIQWPKNQNPDFDGQELTLKLHHDGNLGSFK 66

Query: 72 SSSAKDVSKMLF 84
           SS K+   + F
Sbjct: 67 GSSGKEYDVVSF 78

[Close]

BLAST of Cla023358 vs. TrEMBL
Match: F6HJ73_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00220 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 3.0e-16
Identity = 45/84 (53.57%), Postives = 57/84 (67.86%), Query Frame = 1


Query: 2   SNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQL 61
           S  +DA    + YKPP EF E+ ++ L D+S++D  ELWLIQWP NQ PDFDGQE SL+L
Sbjct: 21  SEGMDAVSEAD-YKPPPEFIEDTKDSLVDLSMTDSKELWLIQWPVNQHPDFDGQELSLKL 80

Query: 62  HPDGHLGSFQSSSAKDVSKMLFLS 86
           H DG LG F+ SS K  + + F S
Sbjct: 81  HQDGQLGKFEGSSGKLYNVVSFAS 103

[Close]

BLAST of Cla023358 vs. TrEMBL
Match: K4CR14_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-16
Identity = 40/63 (63.49%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 14 YKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQSS 73
          YKPP+EFEE K++ L ++++SD  ELWLIQWP NQ P  DGQE SL+LH DGH+GSF+ S
Sbjct: 9  YKPPSEFEEVKKDSLVNLNISDSTELWLIQWPFNQHPGLDGQEVSLKLHHDGHIGSFEDS 68

Query: 74 SAK 77
          S K
Sbjct: 69 SGK 71

[Close]

BLAST of Cla023358 vs. TrEMBL
Match: A9PE50_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12900g PE=2 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-16
Identity = 44/72 (61.11%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 5  VDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPD 64
          +D  + VEGYKP   FEE+ RE L DISLSD  ELWLIQWP N+ PDF+G+E SL L  D
Sbjct: 1  MDDVEEVEGYKPEPGFEEDSREPLADISLSDSTELWLIQWPINELPDFNGKELSLSLDQD 60

Query: 65 GHLGSFQSSSAK 77
          G LGSF++S  K
Sbjct: 61 GCLGSFEASPGK 72

[Close]

BLAST of Cla023358 vs. NCBI nr
Match: gi|449456619|ref|XP_004146046.1| (PREDICTED: mediator-associated protein 2 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.8e-30
Identity = 64/76 (84.21%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA ++VEGYKPPAEFEE+KREFLTDISL+D  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSAK 77
          LHPDGH+GSFQ SS K
Sbjct: 61 LHPDGHMGSFQGSSGK 76

[Close]

BLAST of Cla023358 vs. NCBI nr
Match: gi|659127432|ref|XP_008463699.1| (PREDICTED: mediator-associated protein 2 [Cucumis melo])

HSP 1 Score: 139.8 bits (351), Expect = 4.0e-30
Identity = 63/76 (82.89%), Postives = 71/76 (93.42%), Query Frame = 1


Query: 1  MSNEVDAFQSVEGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQ 60
          MS+EVDA ++VEGYKPPAEFEE++REFLTDISL+D  ELWLIQWP+NQAPDFDGQEFSLQ
Sbjct: 1  MSSEVDALKNVEGYKPPAEFEEDRREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61 LHPDGHLGSFQSSSAK 77
          LHPDGH+GSFQ SS K
Sbjct: 61 LHPDGHMGSFQGSSGK 76

[Close]

BLAST of Cla023358 vs. NCBI nr
Match: gi|720085965|ref|XP_010243688.1| (PREDICTED: mediator-associated protein 2 [Nelumbo nucifera])

HSP 1 Score: 96.3 bits (238), Expect = 5.1e-17
Identity = 43/72 (59.72%), Postives = 52/72 (72.22%), Query Frame = 1


Query: 14 YKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQSS 73
          Y+PP EFEE  R+ L DISL+D  E WLIQWP NQ PDFDGQE +L+LH DG +GSF+ S
Sbjct: 8  YRPPPEFEENTRDPLVDISLTDSTEFWLIQWPHNQTPDFDGQEVTLKLHRDGRMGSFEGS 67

Query: 74 SAKDVSKMLFLS 86
          S K+   + F S
Sbjct: 68 SGKEYEVVSFAS 79

[Close]

BLAST of Cla023358 vs. NCBI nr
Match: gi|697128981|ref|XP_009618547.1| (PREDICTED: mediator-associated protein 2 [Nicotiana tomentosiformis])

HSP 1 Score: 94.7 bits (234), Expect = 1.5e-16
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1


Query: 14 YKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQSS 73
          YKPP EFEE K++ L +++L+D  ELWLIQWP NQ PDFDG+E SL+LH DGH+GSF+ S
Sbjct: 9  YKPPPEFEEVKKDSLINLNLADSTELWLIQWPLNQHPDFDGREVSLKLHHDGHMGSFEES 68

Query: 74 SAK 77
          S K
Sbjct: 69 SGK 71

[Close]

BLAST of Cla023358 vs. NCBI nr
Match: gi|703160999|ref|XP_010112677.1| (hypothetical protein L484_019131 [Morus notabilis])

HSP 1 Score: 94.0 bits (232), Expect = 2.5e-16
Identity = 42/72 (58.33%), Postives = 53/72 (73.61%), Query Frame = 1


Query: 12 EGYKPPAEFEEEKREFLTDISLSDCAELWLIQWPSNQAPDFDGQEFSLQLHPDGHLGSFQ 71
          E Y P  EFEE+ ++ L D+SL+D  ELWLIQWP NQ PDFDGQE +L+LH DG+LGSF+
Sbjct: 7  EAYMPSLEFEEDAKDPLVDLSLNDSTELWLIQWPKNQNPDFDGQELTLKLHHDGNLGSFK 66

Query: 72 SSSAKDVSKMLF 84
           SS K+   + F
Sbjct: 67 GSSGKEYDVVSF 78

The following BLAST results are available for this feature:

BLAST of Cla023358 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L047_CUCSA	1.3e-30	84.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G629490 PE=4 SV=1	[more]
W9SLQ0_9ROSA	1.8e-16	58.33	Uncharacterized protein OS=Morus notabilis GN=L484_019131 PE=4 SV=1	[more]
F6HJ73_VITVI	3.0e-16	53.57	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00220 PE=4 SV=...	[more]
K4CR14_SOLLC	3.9e-16	63.49	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A9PE50_POPTR	3.9e-16	61.11	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12900g PE=2 SV=1	[more]

BLAST of Cla023358 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456619\|ref\|XP_004146046.1\|	1.8e-30	84.21	PREDICTED: mediator-associated protein 2 [Cucumis sativus]	[more]
gi\|659127432\|ref\|XP_008463699.1\|	4.0e-30	82.89	PREDICTED: mediator-associated protein 2 [Cucumis melo]	[more]
gi\|720085965\|ref\|XP_010243688.1\|	5.1e-17	59.72	PREDICTED: mediator-associated protein 2 [Nelumbo nucifera]	[more]
gi\|697128981\|ref\|XP_009618547.1\|	1.5e-16	65.08	PREDICTED: mediator-associated protein 2 [Nicotiana tomentosiformis]	[more]
gi\|703160999\|ref\|XP_010112677.1\|	2.5e-16	58.33	hypothetical protein L484_019131 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0044238	primary metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla023358	Cla023358	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla023358	Cla023358.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla023358.1.cds3	Cla023358.1.cds3	CDS
Cla023358.1.cds2	Cla023358.1.cds2	CDS
Cla023358.1.cds1	Cla023358.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36407	FAMILY NOT NAMED	coord: 4..76 score: 1.3