CsaV3_4G033440 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_4G033440
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	mediator-associated protein 2
Location	chr4 : 23673753 .. 23679101 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TATATATATATATATGATTATTATTTTGTATTATGATATTTTAAAACATGGATGAATTGAGTTGGTAATATGACAGATTGTTCTAAGTGTTCTTTAACAGCGTAGTTATTTTAACCTTAGAAAAGAAAGAAGAAAAGGAGGAGTAAGCCCTAAGCCCTTTATTCTTCCCGCCAGCACTTCCCTTCTCCAGCTGCCGAGTGTCGCCGCCGAACCGCCGCTCCATCTCTCTGGTTCAGTGCTTCCACTGCTGTGTTTCATCCTCTCCTCCCGCTGGAGCCTCCTTCTATTCCTTTGTTTCTGCTGCTATTCTCATATTGAAATACTTCGTACGTGAGTTGTTTGACGAAATGCCTGGGAGTTCTTTTTTTCTTTCTGTTATATGATATCAGAGTGTTGCTTTGTTGTTTGTCGTGTTACAGGGACTTAATTAGCTTTGAGTATGAGTAGCGAGGTAGATGCTCTTAAAAATGTAGAAGGCTACAAACCTCCAGCAGAATTTGAGGAAGACAAAAGGGAATTTCTTACTGATATTTCTTTGACTGACTCTGAAGAGTTGTGGCTTATTCAATGGCCTGCTAACCAAGTAAGATATTATAAACTTATCTTGAAAAATGTTACATCTACCTGCAGTTTGGAAGAAATTAAAATGAAGAACGATCCATAAATGTGCTATTTTTTAATTTTTTCAACATTAAGTTTGTTACAGTCATTTCAAACACTGTTTAATTTGAGAGGGATTTATTCTTTTCTTCAATGGGTATCGTAGGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCACCCAGATGGACATATGGGCAGCTTTCAGGGTTCATCAGGTAACTATCATTTTGTTATCTATTTACTTCTTTTTCTTTCTAAAGAAACAATTTCATTGATTTTTTAAATTAAAAAATGATATAACATGGAGCTACAATAAGCTATCTTAATGGTTTAGAAGGGAAGCGTATACGAAGCAAAAAGGTTAGAGCTTTTATTTACACCAAGAAATAACATATTAAATAATAAGATCAAGGGAAGTATCATCAGGACGATCCTTTAAGACGTTTTGATTTTTTTGCTCTCACAGCACCCAAAAGAGAGCACAAGATATATGCAACCACAAAAGAGCTTTTGTATTATTGAATGGGTGACTCAAGAGAATGGAGTTGAGTTATGTAGTAACGTCTCTAGGAAAAGCCAAAAACAAAAGCATCGTGAAGTTCTCCAGAATTTCCGAGTAAAAGAATGGAGGAAGAGGTGGTTTTTTTTATTCATCATCAGTTCTGCAAATAGAACCACACAGAGATATGGCCGTATTAAACATTCTTTTTTTAAGAGCACCGTTGGTGGTAATGGCCTTGTGAGCCAATTCCCATTTCTAGGGTATTTCTCTTTCCATATTCCTGTAGCCAAATATGTCTCCAAAATATTGTTTCTATCACCCGTATCAGCTAAAAGAGAATTTCTAGAAAGTGTCCTTCAGGATTGAGAGGTCATTTCGAAGCATCTATTGCCATCGAGACTAAAACCATATTGAGGTCTCAAAAGTTGTTATTGACATTAGTCTTCACCCAGGATTGAGGTCTCAAAAGTGTCTCTTGAGAACAAGGGTTGCCTGGTTACTCAATTTAAGGTGATATGCTGAACCGGATTTTATTTTTAATAAGCTCCCTTCGTTAAGCATCCTTTCTGTGCTTATAAGTTATATCTCAAATCCATTTAGCACAAAGGGCTTGGTTTTTTTCTCTCATAGGGTATGCCCGAGGCCTCTTTGATTATCAGGATGAAGAGGTTTAGACAATTAACAAGATAATGTTGGTGGAAGCTCTTTGCCTGTTTTAATGTAAGAGGTTTTCACTGTGTGAAAATATACACTGTTCTTTCTATTGAACTCTACTGCATCTCAATATGAGGTATATAAACCCTTACACAAAGATGCAAAACAAATGGAAAAATTGAGAAGCTAACTGCTAATTGATTAAATTTGGAAGGTTATTAAGTGCAGATAATTACAACAGGAAAATGCATAAATATATAAAACTGAATATGTAAAAAATTGGCAGCAGTTTCAAGGGAAATTGTGATTGAAGAATATTCTGTCAAGGCCCAATCTTTGGTGCTTTCAATCATGGAGTGAGAACCTCGCCGAAGGAGAATCAATGTCTTAATTGGGGCAAATTGATTTTTTAACTGATATCCATGAGTGTTCGGGCCAGCTTATGAGCACAATCAAGCATTCTTTAATCAATTGGGCCAATCGACTTAAGTTGTACTTTCAGGATATCAAGGGTGAGTCGTGGTAATTACCAAACTTGAGGTGTTAGTTGTCAATCTAATATGATAGTTGGGTAAGCAGACTCGATGGAACTTGATTCCCCTTTTTTACAATATTGTTCTGCCCAATAGGGTTGTCTGATGATTGCTTCTGCTATGAATCTGAACATTGTTGTAATGAAGTTTGATTTTTTGAATTTAATGTGGTTGCAATAAACTTTGTGCTTTTGATGATGAGTAGCTTTCAACTCTTCCTTGGTTTCCTCCTCTTCCACGAGTGCTAAAATTTCTACCTCTTCCTCTAGATCCACTCTTATGATTAAAGAAGGCTTGATTGTGCTCAATTTGAGAGTGCTTTTCTTCTTCATTATGGACCGCATGTTCACAATCCAAACTCTTTACTCATTATTCAGTCCAAGACACACATCTCAATTGGAATGCTTTTGTTTCTCCAGCTTAATTTGCGCTTACATTTTAATAATGTCTTGCCATAGAACCCTTTGATGTATTACATTTTGAGATGGTTGGGTGGATCCACTGACCCTACTCTTCACATGTACTACTCTGTGATCATTATGTCTCATATTTTGAGCATTAAACTTTTCTTCACTATATCAATGAAATTTTTTTGTTTCCGTTTAAAGAAACCAATTAACAAAATATTGCTCTTTGCCATTTAGCGCACCTTTCCAAAGGAAATTCCTAGATATTTTTTTTTAATCTCTTTTCTAATCTTAATAGCCAAGGAAAAATTGTAGGGGTACGTTTGGAAGATTTGAAAGTGTAGCTTGTACGAGAGTGAGCCTTCCCCCCTTTAAAGGTGAATCCCCATGCATAATCTTTTCTCAAAATTTTCAGTGATCACCCAGTGTCCAAAAAGCTGTGGCTTTTGGCCAACCATGTAACGGGTGACCAAAGTAAGAATGGGGCCAATAACCTCTTTTGCATCCGTATTTGAAAGCTAATTCATCAACGATGTCCAGTTCAACATTGATACTGATAAATCCAGACTTTTGGAGGTGATGTTTTCCTAGGATGCCTTCTCAAAAGCCTCAATCTCATTAGAAAGTGAACAAAATGACTCGTCCATCAAAATCAGAGAAAAGATTGTCAATGACTATGAGGGGACAATCTTCTTGACGTCCATTTTTCTTGACTCTGTTTTTCTTTTTAAAATGAGAAACAGTCAATCATAATATCATTGATGAGAAATAGTCAATCATAATTGAAGAACTCTTTTTTTTTTCTCATTGCACAAATGAATAGCTTCATGTAATCTCACTGGATTTGTGCCATTTTTCTCGACTCTTTGAATTATTCTATTATCAATTTTTTCAAATAACAGTTGGTGCATGAATATGCTCGAAGTATTTTTGTTTGAATGTGCACTACAGCTATTCTGTTCATTTTCTCCGTACAATAATATCAATCTATTTTTGTTTTCATCAAAAGGAAAATCATATGATGTGATCAGCTGTGTGGCTCAAGAACCTGAGGCTTCTGTTTTTCTACCATCTTCATCGGACACCAGATTAGGTGAGAACTCCCTCTTTCTGTTAGTGTAAATATTTATGTATTTTAATTTTTTTTAATCCCAAAAAACCTCCATTTTGAATCCGTTTTACTTCACATGTTAGTATCATTAGTCTCTTCGTTGGAGTTACTCTCTCTCTCTCTCTCTCTTCTTTTTGTCATACCTGGCTGATACTTAAACCTGTACCAGTTCTGCTCTCCATTCTAGCTTCATTTTCAAAGTTCCTATATTGTAGATAGGTAGATGGTGTGTACTGGTTTAGTTTCACTTTCAATACTATTGACGTTATGCCTAGACCTCCAGTCTAGCTTCTCCATTCCCAGTGATTCTGATTCTGTCTGTTCTCACATGCCGACATTAGTCTATTAGTGTGTTCTATAACTTTTAATCTACTCCTTCCATAATCACTGTCACTTGCCGATTCTTCAATTACAAGCTTTAAAATTTTATTTTTTAGTTCTGCCTTGTGAGCAACATTTTACTTTTTTAGTTCTCTGTGGTCATAACATTTTATTAGTGAGCTGTTGTGTGCTAATACTACAATTAACCAATTAGAATAGAAACGAACAATATTGATACTCCACCCATCTCAATTCTAAGTCAAATGTCTTCTCGATGTATGTTCACACATCATATTCTAGTGGCATGGTCCTTACTGTGCAGTAGATTCACCATTCATTTTAATTTCAAGTCATCTTACCCTGATAAAACTGTTCTATTTTTTATGCCCTTGAAGTTGGAAAGATTTCCCGGCGGATTTCTCTTGTGCATTACCCAGAACCTGAAGAACTCGAAAAGGCCACCATCCCTTTGAAATCACTGTACCAAAAATCTTCTGGAATTTCATTGACCAATTCCCGTCAAACTACGACATCCAGAGGCCCACACTCGAGCAGTAGAAGAACAACCTCTTCAAGAAGTAGCAAACCTAGAAGTTCAGTATCTGAATTCACAGAACCATCAAAGACTTCAAGTGTTAAACAGGAACTGGAATCTACCGAGTCCAGAGATCATAAAAGAAAAGATTCATCAAAAAGAAAACGCTTGCATGAACCTAGTAGATCAATTGATCACTCAACTCGAGATTCAGGACACGGTAATAGTGCAGTAACCTCCTCAGGGTCTGCTGAGAGATCTAGTGAAGGTAAATCAAAAAAGCAAAAGAAATGAATCAGGTTTCCACAAACTTGAAGTATTCATTAGTTTTTGACAAGTTCTATAGTTTGCCTATTCTCTTATTCTCCATTTTCCTTTGCTTGGACTAAATTCTCGAGCAATTGTTGTACGTCATAGCCCATGGAAAGTTCTTTCTCATATCAGATTTACTATAAGTTACATTGAGTACTTAATTAATTAATGTTAATTTTGAATTAATAGTAAATGTTTGTTAATTTGTAACCTATCGGTTCAGAGTATGTATTAACCGTTGAGTTATTTTCTGATTTTTGTAAATTAATAGTTAACCTGGGTTTGAGTTGAATGTAAGCTGAGTTTTGTGATAGATTTGATACGACTCTCGCATCGGAGCAACG

mRNA sequence

ATGAGTAGCGAGGTAGATGCTCTTAAAAATGTAGAAGGCTACAAACCTCCAGCAGAATTTGAGGAAGACAAAAGGGAATTTCTTACTGATATTTCTTTGACTGACTCTGAAGAGTTGTGGCTTATTCAATGGCCTGCTAACCAAGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCACCCAGATGGACATATGGGCAGCTTTCAGGGTTCATCAGGAAAATCATATGATGTGATCAGCTGTGTGGCTCAAGAACCTGAGGCTTCTGTTTTTCTACCATCTTCATCGGACACCAGATTAGTTGGAAAGATTTCCCGGCGGATTTCTCTTGTGCATTACCCAGAACCTGAAGAACTCGAAAAGGCCACCATCCCTTTGAAATCACTGTACCAAAAATCTTCTGGAATTTCATTGACCAATTCCCGTCAAACTACGACATCCAGAGGCCCACACTCGAGCAGTAGAAGAACAACCTCTTCAAGAAGTAGCAAACCTAGAAGTTCAGTATCTGAATTCACAGAACCATCAAAGACTTCAAGTGTTAAACAGGAACTGGAATCTACCGAGTCCAGAGATCATAAAAGAAAAGATTCATCAAAAAGAAAACGCTTGCATGAACCTAGTAGATCAATTGATCACTCAACTCGAGATTCAGGACACGGTAATAGTGCAGTAACCTCCTCAGGGTCTGCTGAGAGATCTAGTGAAGGTAAATCAAAAAAGCAAAAGAAATGA

Coding sequence (CDS)

ATGAGTAGCGAGGTAGATGCTCTTAAAAATGTAGAAGGCTACAAACCTCCAGCAGAATTTGAGGAAGACAAAAGGGAATTTCTTACTGATATTTCTTTGACTGACTCTGAAGAGTTGTGGCTTATTCAATGGCCTGCTAACCAAGCCCCAGATTTTGATGGGCAAGAATTTTCTCTTCAACTTCACCCAGATGGACATATGGGCAGCTTTCAGGGTTCATCAGGAAAATCATATGATGTGATCAGCTGTGTGGCTCAAGAACCTGAGGCTTCTGTTTTTCTACCATCTTCATCGGACACCAGATTAGTTGGAAAGATTTCCCGGCGGATTTCTCTTGTGCATTACCCAGAACCTGAAGAACTCGAAAAGGCCACCATCCCTTTGAAATCACTGTACCAAAAATCTTCTGGAATTTCATTGACCAATTCCCGTCAAACTACGACATCCAGAGGCCCACACTCGAGCAGTAGAAGAACAACCTCTTCAAGAAGTAGCAAACCTAGAAGTTCAGTATCTGAATTCACAGAACCATCAAAGACTTCAAGTGTTAAACAGGAACTGGAATCTACCGAGTCCAGAGATCATAAAAGAAAAGATTCATCAAAAAGAAAACGCTTGCATGAACCTAGTAGATCAATTGATCACTCAACTCGAGATTCAGGACACGGTAATAGTGCAGTAACCTCCTCAGGGTCTGCTGAGAGATCTAGTGAAGGTAAATCAAAAAAGCAAAAGAAATGA

Protein sequence

MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQLHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEELEKATIPLKSLYQKSSGISLTNSRQTTTSRGPHSSSRRTTSSRSSKPRSSVSEFTEPSKTSSVKQELESTESRDHKRKDSSKRKRLHEPSRSIDHSTRDSGHGNSAVTSSGSAERSSEGKSKKQKK

Homology

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BLAST of CsaV3_4G033440 vs. NCBI nr
Match: XP_004146046.1 (PREDICTED: mediator-associated protein 2 [Cucumis sativus] >KGN55103.1 hypothetical protein Csa_4G629490 [Cucumis sativus])

HSP 1 Score: 348.6 bits (893), Expect = 1.8e-92
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60
           MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120
           LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE
Sbjct: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120

Query: 121 LEKATIPLKSLYQKSSGISLTNSRQTTTSRGPHXXXXXXXXXXXXXXXXXXXEFTEXXXX 180
           LEKATIPLKSLYQKSSGISLTNSRQTTTSRGPHXXXXXXXXXXXXXXXXXXXEFTEXXXX
Sbjct: 121 LEKATIPLKSLYQKSSGISLTNSRQTTTSRGPHXXXXXXXXXXXXXXXXXXXEFTEXXXX 180

Query: 181 XXXXXXXXXXXXRDHKRXXXXXXXXXXXXXXXXXXXXXXXGHGNSAVTSSGSAERSSEGK 240
           XXXXXXXXXXXXRDHKRXXXXXXXXXXXXXXXXXXXXXXXGHGNSAVTSSGSAERSSEGK
Sbjct: 181 XXXXXXXXXXXXRDHKRXXXXXXXXXXXXXXXXXXXXXXXGHGNSAVTSSGSAERSSEGK 240

Query: 241 SKKQKK 247
           SKKQKK
Sbjct: 241 SKKQKK 246

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BLAST of CsaV3_4G033440 vs. NCBI nr
Match: XP_008463699.1 (PREDICTED: mediator-associated protein 2 [Cucumis melo])

HSP 1 Score: 324.3 bits (830), Expect = 3.5e-85
Identity = 198/246 (80.49%), Postives = 202/246 (82.11%), Query Frame = 0


Query: 1   MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60
           MSSEVDALKNVEGYKPPAEFEED+REFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MSSEVDALKNVEGYKPPAEFEEDRREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120
           LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE
Sbjct: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120

Query: 121 LEKATIPLKSLYQKSSGISLTNSRQTTTSRGPHXXXXXXXXXXXXXXXXXXXEFTEXXXX 180
           LEKAT  LKSL QKSSGISLTNSRQTTTSRGP XXXXXXXXXXXXXXXXXXX F E    
Sbjct: 121 LEKATTSLKSLCQKSSGISLTNSRQTTTSRGPQXXXXXXXXXXXXXXXXXXXXFEEPWKP 180

Query: 181 XXXXXXXXXXXXRDHKRXXXXXXXXXXXXXXXXXXXXXXXGHGNSAVTSSGSAERSSEGK 240
           X           RDH++                 X     GH +SAVTSSGSAERSSEGK
Sbjct: 181 XSVKQELKSTESRDHQKKDSSKRKRSHEPSRSIDXSTRDSGHSHSAVTSSGSAERSSEGK 240

Query: 241 SKKQKK 247
           SKKQKK
Sbjct: 241 SKKQKK 246

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BLAST of CsaV3_4G033440 vs. NCBI nr
Match: XP_022976579.1 (mediator-associated protein 2-like [Cucurbita maxima])

HSP 1 Score: 253.4 bits (646), Expect = 7.7e-64
Identity = 128/153 (83.66%), Postives = 141/153 (92.16%), Query Frame = 0


Query: 1   MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60
           MSSEVDA K+VE YKPP EFEEDKREFLTD+SL++  ELWLIQWPANQ+PDFDGQE SLQ
Sbjct: 1   MSSEVDACKSVERYKPPPEFEEDKREFLTDMSLSNCAELWLIQWPANQSPDFDGQEISLQ 60

Query: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120
           LHPDGH+GSF GSSGKSYDV+SCVAQEPEASVFLPSSSD++LV KI RRISLVHYP+PEE
Sbjct: 61  LHPDGHLGSFNGSSGKSYDVVSCVAQEPEASVFLPSSSDSKLVRKIIRRISLVHYPKPEE 120

Query: 121 LEKATIPLKSLYQKSSGISLTNSRQTTTSRGPH 154
           LEKAT PLKS+Y+KSSGISL  SRQTTTSRGP+
Sbjct: 121 LEKAT-PLKSVYKKSSGISL--SRQTTTSRGPN 150

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BLAST of CsaV3_4G033440 vs. NCBI nr
Match: XP_022981239.1 (LOW QUALITY PROTEIN: mediator-associated protein 2-like [Cucurbita maxima])

HSP 1 Score: 250.8 bits (639), Expect = 5.0e-63
Identity = 124/147 (84.35%), Postives = 137/147 (93.20%), Query Frame = 0


Query: 1   MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60
           MS++V A+K+VEGYKPP EFEED REFLTDISL+DS ELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MSNKVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120
             PDGH+GSFQGSSGKSYDV+SCVAQEPEASVFLPSSSDTRLVGKI+RRISLVHYPEPEE
Sbjct: 61  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 120

Query: 121 LEKATIPLKSLYQKSSGISLTNSRQTT 148
           LEKAT P+KS+Y+KSSG+SLT S + T
Sbjct: 121 LEKAT-PMKSVYKKSSGMSLTTSSRPT 146

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BLAST of CsaV3_4G033440 vs. NCBI nr
Match: XP_022940917.1 (mediator-associated protein 2-like [Cucurbita moschata])

HSP 1 Score: 250.4 bits (638), Expect = 6.5e-63
Identity = 124/147 (84.35%), Postives = 136/147 (92.52%), Query Frame = 0


Query: 1   MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60
           M +EV A+K+VEGYKPP EFEED REFLTDISL+DS ELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MRNEVGAVKSVEGYKPPPEFEEDDREFLTDISLSDSVELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120
             PDGH+GSFQGSSGKSYDV+SCVAQEPEASVFLPSSSDTRLVGKI+RRISLVHYPEPEE
Sbjct: 61  HRPDGHLGSFQGSSGKSYDVVSCVAQEPEASVFLPSSSDTRLVGKIARRISLVHYPEPEE 120

Query: 121 LEKATIPLKSLYQKSSGISLTNSRQTT 148
           LEKAT P+KS+Y+KSSG+SLT S + T
Sbjct: 121 LEKAT-PMKSVYKKSSGMSLTTSSRPT 146

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BLAST of CsaV3_4G033440 vs. TAIR10
Match: AT5G64680.3 (unknown protein)

HSP 1 Score: 77.0 bits (188), Expect = 1.8e-14
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 14  YKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQLHPDGHMGSFQGS 73
           +K   +F     E L D  LT S+E WLIQ P  Q P+ +     ++   DG  G F+ S
Sbjct: 5   FKVSGDFIVSGAEQLDDTDLTRSDEFWLIQAPLGQFPEIEENTLKIEPDKDGLFGEFKDS 64

Query: 74  S--------GKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEELEKAT 133
           +        G  YD+ S  +Q+  A + +P S ++ +VGKI+RR++LV YPEP EL +  
Sbjct: 65  NAGSLHLCLGAKYDLASFHSQDAGAELIIP-SEESMIVGKITRRVALVRYPEPNELLQ-- 124

Query: 134 IPLKSLYQKSSGISLTNSRQTTTS 150
             +K+  Q+    S+TNS + +++
Sbjct: 125 -KMKARTQQKLVGSVTNSSKKSSN 144

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BLAST of CsaV3_4G033440 vs. Swiss-Prot
Match: sp|F4KF27|MDA2_ARATH (Mediator-associated protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g64680 PE=1 SV=1)

HSP 1 Score: 77.0 bits (188), Expect = 3.2e-13
Identity = 49/144 (34.03%), Postives = 78/144 (54.17%), Query Frame = 0


Query: 14  YKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQLHPDGHMGSFQGS 73
           +K   +F     E L D  LT S+E WLIQ P  Q P+ +     ++   DG  G F+ S
Sbjct: 5   FKVSGDFIVSGAEQLDDTDLTRSDEFWLIQAPLGQFPEIEENTLKIEPDKDGLFGEFKDS 64

Query: 74  S--------GKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEELEKAT 133
           +        G  YD+ S  +Q+  A + +P S ++ +VGKI+RR++LV YPEP EL +  
Sbjct: 65  NAGSLHLCLGAKYDLASFHSQDAGAELIIP-SEESMIVGKITRRVALVRYPEPNELLQ-- 124

Query: 134 IPLKSLYQKSSGISLTNSRQTTTS 150
             +K+  Q+    S+TNS + +++
Sbjct: 125 -KMKARTQQKLVGSVTNSSKKSSN 144

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BLAST of CsaV3_4G033440 vs. TrEMBL
Match: tr|A0A0A0L047|A0A0A0L047_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629490 PE=4 SV=1)

HSP 1 Score: 348.6 bits (893), Expect = 1.2e-92
Identity = 246/246 (100.00%), Postives = 246/246 (100.00%), Query Frame = 0


Query: 1   MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60
           MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120
           LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE
Sbjct: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120

Query: 121 LEKATIPLKSLYQKSSGISLTNSRQTTTSRGPHXXXXXXXXXXXXXXXXXXXEFTEXXXX 180
           LEKATIPLKSLYQKSSGISLTNSRQTTTSRGPHXXXXXXXXXXXXXXXXXXXEFTEXXXX
Sbjct: 121 LEKATIPLKSLYQKSSGISLTNSRQTTTSRGPHXXXXXXXXXXXXXXXXXXXEFTEXXXX 180

Query: 181 XXXXXXXXXXXXRDHKRXXXXXXXXXXXXXXXXXXXXXXXGHGNSAVTSSGSAERSSEGK 240
           XXXXXXXXXXXXRDHKRXXXXXXXXXXXXXXXXXXXXXXXGHGNSAVTSSGSAERSSEGK
Sbjct: 181 XXXXXXXXXXXXRDHKRXXXXXXXXXXXXXXXXXXXXXXXGHGNSAVTSSGSAERSSEGK 240

Query: 241 SKKQKK 247
           SKKQKK
Sbjct: 241 SKKQKK 246

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BLAST of CsaV3_4G033440 vs. TrEMBL
Match: tr|A0A1S3CLF4|A0A1S3CLF4_CUCME (mediator-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC103501782 PE=4 SV=1)

HSP 1 Score: 324.3 bits (830), Expect = 2.3e-85
Identity = 198/246 (80.49%), Postives = 202/246 (82.11%), Query Frame = 0


Query: 1   MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60
           MSSEVDALKNVEGYKPPAEFEED+REFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ
Sbjct: 1   MSSEVDALKNVEGYKPPAEFEEDRREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60

Query: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120
           LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE
Sbjct: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120

Query: 121 LEKATIPLKSLYQKSSGISLTNSRQTTTSRGPHXXXXXXXXXXXXXXXXXXXEFTEXXXX 180
           LEKAT  LKSL QKSSGISLTNSRQTTTSRGP XXXXXXXXXXXXXXXXXXX F E    
Sbjct: 121 LEKATTSLKSLCQKSSGISLTNSRQTTTSRGPQXXXXXXXXXXXXXXXXXXXXFEEPWKP 180

Query: 181 XXXXXXXXXXXXRDHKRXXXXXXXXXXXXXXXXXXXXXXXGHGNSAVTSSGSAERSSEGK 240
           X           RDH++                 X     GH +SAVTSSGSAERSSEGK
Sbjct: 181 XSVKQELKSTESRDHQKKDSSKRKRSHEPSRSIDXSTRDSGHSHSAVTSSGSAERSSEGK 240

Query: 241 SKKQKK 247
           SKKQKK
Sbjct: 241 SKKQKK 246

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BLAST of CsaV3_4G033440 vs. TrEMBL
Match: tr|A0A2P5FJR3|A0A2P5FJR3_9ROSA (Mediator-associated protein OS=Trema orientalis OX=63057 GN=TorRG33x02_061120 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 1.9e-42
Identity = 110/254 (43.31%), Postives = 147/254 (57.87%), Query Frame = 0


Query: 1   MSSEVDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQ 60
           M+SE  A+   +GY PP EF+ED +E L D+SLTDS ELWLIQWP N+ PDFDGQE +L+
Sbjct: 1   MASEPAAVSE-DGYIPPPEFKEDDKESLVDLSLTDSTELWLIQWPKNKNPDFDGQEVTLK 60

Query: 61  LHPDGHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEE 120
           LH DG + +F+GSSGK YD++S VAQEP A+VF+ S+S +++VGKISRR+SLVHYPEP E
Sbjct: 61  LHRDGTLANFKGSSGKEYDMVSFVAQEPNATVFVSSASGSKIVGKISRRVSLVHYPEPHE 120

Query: 121 LEK-ATIPLKSLYQKSSGISLTNS-------RQTTTSRGPHXXXXXXXXXXXXXXXXXXX 180
           LE+ ++  L+ +YQKSS ++LTNS        Q+T  R                      
Sbjct: 121 LEQVSSSNLRQMYQKSSSVTLTNSSHRVGTPAQSTWLRNARSASGHATSSHSSKHKSSLS 180

Query: 181 EFTEXXXXXXXXXXXXXXXXRDHKRXXXXXXXXXXXXXXXXXXXXXXXGHGNSAVTSSGS 240
           +  E                 D                          G G+SA+T+SGS
Sbjct: 181 DVAEPSKTPKRKHVPVPSRSIDQS--------------------TQNSGRGHSAITTSGS 233

Query: 241 AERSSEGKSKKQKK 247
           +ERS +GKSKK+K+
Sbjct: 241 SERSHQGKSKKRKQ 233

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BLAST of CsaV3_4G033440 vs. TrEMBL
Match: tr|A0A2R6P2W8|A0A2R6P2W8_ACTCH (Mediator-associated protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc32686 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.2e-42
Identity = 89/140 (63.57%), Postives = 114/140 (81.43%), Query Frame = 0


Query: 5   VDALKNVEGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQLHPD 64
           +DA   V GY PP EF+ED ++ L ++SL+DS ELWLIQWP NQAPDFDGQE SL+LH D
Sbjct: 1   MDAASEV-GYGPPPEFQEDVKDPLIELSLSDSTELWLIQWPINQAPDFDGQELSLKLHRD 60

Query: 65  GHMGSFQGSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEELEKA 124
           G +GSF+GSSGKSYDV+S  AQ+P A+VF+ S+S++++VGKISRR+SLVHYPEP ELEK 
Sbjct: 61  GLLGSFEGSSGKSYDVVSFKAQDPNATVFISSASESKIVGKISRRVSLVHYPEPSELEKQ 120

Query: 125 TI-PLKSLYQKSSGISLTNS 144
            I   + +YQ+S+G SLT+S
Sbjct: 121 NINNQRQMYQRSTGTSLTSS 139

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BLAST of CsaV3_4G033440 vs. TrEMBL
Match: tr|A0A2P5CSX4|A0A2P5CSX4_PARAD (Mediator-associated protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_126800 PE=4 SV=1)

HSP 1 Score: 181.0 bits (458), Expect = 3.2e-42
Identity = 107/243 (44.03%), Postives = 141/243 (58.02%), Query Frame = 0


Query: 12  EGYKPPAEFEEDKREFLTDISLTDSEELWLIQWPANQAPDFDGQEFSLQLHPDGHMGSFQ 71
           +GY PP EF+ED +E L D+SLTDS ELWLIQWP N+ PDFDGQE +L+LH DG + +F+
Sbjct: 11  DGYIPPPEFKEDDKESLVDLSLTDSTELWLIQWPKNKNPDFDGQEVTLKLHHDGTLANFK 70

Query: 72  GSSGKSYDVISCVAQEPEASVFLPSSSDTRLVGKISRRISLVHYPEPEELEK-ATIPLKS 131
           GSSGK YD++S VAQEP A+VF+ SSS +++VGKISRR+SLVHYPEP ELE+ ++  L+ 
Sbjct: 71  GSSGKEYDMVSFVAQEPNATVFVSSSSGSKIVGKISRRVSLVHYPEPHELEQVSSSNLRQ 130

Query: 132 LYQKSSGISLTNS-------RQTTTSRGPHXXXXXXXXXXXXXXXXXXXEFTEXXXXXXX 191
           +YQKSS ++LT+S        Q+T  R                      +  E       
Sbjct: 131 MYQKSSSVTLTSSSHRVGTPAQSTWLRNARSVSGRATSGHSSKHKSSISDVGEPSKTPKR 190

Query: 192 XXXXXXXXXRDHKRXXXXXXXXXXXXXXXXXXXXXXXGHGNSAVTSSGSAERSSEGKSKK 247
                     DH                         G G+SA+T+SGS ERS +GKSKK
Sbjct: 191 KHVPVPSRSIDHS--------------------TQNSGRGHSAITTSGSLERSHQGKSKK 233

The following BLAST results are available for this feature:

BLAST of CsaV3_4G033440 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146046.1	1.8e-92	100.00	PREDICTED: mediator-associated protein 2 [Cucumis sativus] >KGN55103.1 hypotheti...	[more]
XP_008463699.1	3.5e-85	80.49	PREDICTED: mediator-associated protein 2 [Cucumis melo]	[more]
XP_022976579.1	7.7e-64	83.66	mediator-associated protein 2-like [Cucurbita maxima]	[more]
XP_022981239.1	5.0e-63	84.35	LOW QUALITY PROTEIN: mediator-associated protein 2-like [Cucurbita maxima]	[more]
XP_022940917.1	6.5e-63	84.35	mediator-associated protein 2-like [Cucurbita moschata]	[more]

BLAST of CsaV3_4G033440 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G64680.3	1.8e-14	34.03	unknown protein	[more]

BLAST of CsaV3_4G033440 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|F4KF27\|MDA2_ARATH	3.2e-13	34.03	Mediator-associated protein 2 OS=Arabidopsis thaliana OX=3702 GN=At5g64680 PE=1 ...	[more]

BLAST of CsaV3_4G033440 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L047\|A0A0A0L047_CUCSA	1.2e-92	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G629490 PE=4 SV=1	[more]
tr\|A0A1S3CLF4\|A0A1S3CLF4_CUCME	2.3e-85	80.49	mediator-associated protein 2 OS=Cucumis melo OX=3656 GN=LOC103501782 PE=4 SV=1	[more]
tr\|A0A2P5FJR3\|A0A2P5FJR3_9ROSA	1.9e-42	43.31	Mediator-associated protein OS=Trema orientalis OX=63057 GN=TorRG33x02_061120 PE...	[more]
tr\|A0A2R6P2W8\|A0A2R6P2W8_ACTCH	3.2e-42	63.57	Mediator-associated protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=...	[more]
tr\|A0A2P5CSX4\|A0A2P5CSX4_PARAD	3.2e-42	44.03	Mediator-associated protein OS=Parasponia andersonii OX=3476 GN=PanWU01x14_12680...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR038823	MED2_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009640	photomorphogenesis
biological_process	GO:0009987	cellular process
biological_process	GO:0044699	single-organism process
biological_process	GO:0090304	nucleic acid metabolic process
biological_process	GO:0001510	RNA methylation
biological_process	GO:0006626	protein targeting to mitochondrion
biological_process	GO:0051604	protein maturation
biological_process	GO:0000338	protein deneddylation
biological_process	GO:0000398	mRNA splicing, via spliceosome
biological_process	GO:0006312	mitotic recombination
biological_process	GO:0000741	karyogamy
biological_process	GO:0009560	embryo sac egg cell differentiation
biological_process	GO:0044238	primary metabolic process
biological_process	GO:0044260	cellular macromolecule metabolic process
biological_process	GO:0043170	macromolecule metabolic process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016592	mediator complex
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_4G033440.1	CsaV3_4G033440.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..246
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 219..235
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..185
IPR038823	Mediator-associated protein 2, plant	PANTHER	PTHR36407	FAMILY NOT NAMED	coord: 7..246

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_4G033440	CSPI04G23220	Wild cucumber (PI 183967)	cpicucB212
CsaV3_4G033440	Cucsa.122900	Cucumber (Gy14) v1	cgycucB167
CsaV3_4G033440	CmaCh09G008440	Cucurbita maxima (Rimu)	cmacucB0028
CsaV3_4G033440	CmaCh01G012250	Cucurbita maxima (Rimu)	cmacucB0566
CsaV3_4G033440	CmoCh01G012780	Cucurbita moschata (Rifu)	cmocucB0552
CsaV3_4G033440	CmoCh09G008380	Cucurbita moschata (Rifu)	cmocucB0016
CsaV3_4G033440	Cp4.1LG02g01910	Cucurbita pepo (Zucchini)	cpecucB0702
CsaV3_4G033440	CsGy4G021600	Cucumber (Gy14) v2	cgybcucB171
CsaV3_4G033440	Carg17079	Silver-seed gourd	carcucB0194
CsaV3_4G033440	Carg14711	Silver-seed gourd	carcucB0344
CsaV3_4G033440	Cla023358	Watermelon (97103) v1	cucwmB367
CsaV3_4G033440	ClCG11G017800	Watermelon (Charleston Gray)	cucwcgB288
CsaV3_4G033440	Lsi04G020460	Bottle gourd (USVL1VR-Ls)	cuclsiB304
CsaV3_4G033440	MELO3C032361.2	Melon (DHL92) v3.6.1	cucmedB291
CsaV3_4G033440	Cla97C11G223830	Watermelon (97103) v2	cucwmbB281
CsaV3_4G033440	Bhi09G002833	Wax gourd	cucwgoB426

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_4G033440	Cucumber (Chinese Long) v3	cuccucB030
CsaV3_4G033440	Silver-seed gourd	carcucB0690
CsaV3_4G033440	Cucumber (Gy14) v2	cgybcucB034
CsaV3_4G033440	Cucurbita maxima (Rimu)	cmacucB0258
CsaV3_4G033440	Cucurbita maxima (Rimu)	cmacucB0396
CsaV3_4G033440	Cucurbita moschata (Rifu)	cmocucB0246
CsaV3_4G033440	Cucurbita moschata (Rifu)	cmocucB0393
CsaV3_4G033440	Cucurbita pepo (Zucchini)	cpecucB0270
CsaV3_4G033440	Cucurbita pepo (Zucchini)	cpecucB0970
CsaV3_4G033440	Wild cucumber (PI 183967)	cpicucB039
CsaV3_4G033440	Bottle gourd (USVL1VR-Ls)	cuclsiB291
CsaV3_4G033440	Melon (DHL92) v3.5.1	cucmeB299