Cla023295 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla023295
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Chalcone--flavonone isomerase (AHRD V1 ***- B6SK22_MAIZE); contains Interpro domain(s) IPR016087 Chalcone isomerase
Location	Chr11 : 19359386 .. 19360753 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTTACAACAGTTGGAAATGCAGGATATGTGGAGGAACCTTCAACCAATGTGAAATTTCCGACGTGCTTGACTCTGCCGGGCTGCCCAACTTCGCTGTCACTGCTTGGAACAGGTCAGTTTATTATGTTTCTACACTGAATTCTACTAAGGAAAGACTGATTTTATGAAAATTTAAACTGTTAAAATCATCTGCAGCTCATATTTTTCCTGCAATGTGTTTAAGAGAACCATTAGAACGAAAAGCTCTTATCATTGTATGCTGCAAATGGTTATTAGTACATAAGTTGCATTGCTGCAGCCAACGGAATTTGCTTCCAACTGTCAAGAACGGAAGGATTTTCGACATCTTTTCAGGATCAAAGGAAAAGAAAAACGAACATCTTTCAAACCGCAGTTCGTTTGTTGTAAGAAGTTGACTATTTATTCTACTTTGAGACATACAAACTACAGAAACTCAGTCAGAGATATTTATAATCATGCTACCTATGAATTTTATACATCCAAAATTTTGATACTTTTACCTGAACTATATTCTTCAACCTGATCTTCATTAGCTGCAAATATTTCAGGTTACAGAGAGAAAGTTTTTGCAATCATTGGTGTTAAGGTCTACGCTGCAGGACTATACATCAATCCATCCATCTCAAATGAATTAAACGCTTGGAGGGGACGATCGGCTGCTGCAATTCAGGAGGATTCTTCCTTGTTCAATATAATTTTTAAGTGTAATAACCGTACATATAAATTCTACATAAGTATATGATTATAGAAGTTGTGGAAAGGGAGAATGCTATTTTCCTTTCCCATTTTTACTCATTGCTTTGAAGCTTATGTAAGTAACAAGTTTCTTGTCTTTTAATGGCAGCTCCTTCAGAAAAATCTTTACAGATTGTTCTTGTCCGAGATGTCGATGGTAAAACTTTCTGGGACGCTTTGGATGATGCCATTTCTCCAAGAATCAAAGCACCAACACCAGTTGATGAATCTGCATTATCTACCTTTCGTAGCATCTTCGAGGGACGATCTCTTAAGAAAGGAACTTTCATATTCTTGACATGGTTGGAGCCTGCAAAGATGCTTGTATGTTTGAACTTTAACTGACTGACATTCTCTTTTCTTTTCCTTCCAGTTATGTAATTGCATAGGCATTCTTCGAGCAAGTTTCGTTCTGCTTATTCTGATGTTGGAGAATTGGTGAATTGCAGGTTAGCATCTCAGTAGATGGCCCACCAACAGGAATTGAAGATACAATTGAATCAAATAATGTGACTTTGGCTCTTTTCGATGTTTTTTTTGGTGACTCCCCTGTTTCTCCTACTTTGAAGGCTTCTATTGCAACTGGATTGGCTGCAGTTTTGAAATAG

mRNA sequence

ATGGGTTACAACAGTTGGAAATGCAGGATATGTGGAGGAACCTTCAACCAATGTGAAATTTCCGACGTGCTTGACTCTGCCGGGCTGCCCAACTTCGCTGTCACTGCTTGGAACAGCCAACGGAATTTGCTTCCAACTGTCAAGAACGGAAGGATTTTCGACATCTTTTCAGGATCAAAGGAAAAGAAAAACGAACATCTTTCAAACCGCAGTTACAGAGAGAAAGTTTTTGCAATCATTGGTGTTAAGGTCTACGCTGCAGGACTATACATCAATCCATCCATCTCAAATGAATTAAACGCTTGGAGGGGACGATCGGCTGCTGCAATTCAGGAGGATTCTTCCTTGTTCAATATAATTTTTAAGTCTCCTTCAGAAAAATCTTTACAGATTGTTCTTGTCCGAGATGTCGATGGTAAAACTTTCTGGGACGCTTTGGATGATGCCATTTCTCCAAGAATCAAAGCACCAACACCAGTTGATGAATCTGCATTATCTACCTTTCGTAGCATCTTCGAGGGACGATCTCTTAAGAAAGGAACTTTCATATTCTTGACATGGTTGGAGCCTGCAAAGATGCTTGTTAGCATCTCAGTAGATGGCCCACCAACAGGAATTGAAGATACAATTGAATCAAATAATGTGACTTTGGCTCTTTTCGATGTTTTTTTTGGTGACTCCCCTGTTTCTCCTACTTTGAAGGCTTCTATTGCAACTGGATTGGCTGCAGTTTTGAAATAG

Coding sequence (CDS)

ATGGGTTACAACAGTTGGAAATGCAGGATATGTGGAGGAACCTTCAACCAATGTGAAATTTCCGACGTGCTTGACTCTGCCGGGCTGCCCAACTTCGCTGTCACTGCTTGGAACAGCCAACGGAATTTGCTTCCAACTGTCAAGAACGGAAGGATTTTCGACATCTTTTCAGGATCAAAGGAAAAGAAAAACGAACATCTTTCAAACCGCAGTTACAGAGAGAAAGTTTTTGCAATCATTGGTGTTAAGGTCTACGCTGCAGGACTATACATCAATCCATCCATCTCAAATGAATTAAACGCTTGGAGGGGACGATCGGCTGCTGCAATTCAGGAGGATTCTTCCTTGTTCAATATAATTTTTAAGTCTCCTTCAGAAAAATCTTTACAGATTGTTCTTGTCCGAGATGTCGATGGTAAAACTTTCTGGGACGCTTTGGATGATGCCATTTCTCCAAGAATCAAAGCACCAACACCAGTTGATGAATCTGCATTATCTACCTTTCGTAGCATCTTCGAGGGACGATCTCTTAAGAAAGGAACTTTCATATTCTTGACATGGTTGGAGCCTGCAAAGATGCTTGTTAGCATCTCAGTAGATGGCCCACCAACAGGAATTGAAGATACAATTGAATCAAATAATGTGACTTTGGCTCTTTTCGATGTTTTTTTTGGTGACTCCCCTGTTTCTCCTACTTTGAAGGCTTCTATTGCAACTGGATTGGCTGCAGTTTTGAAATAG

Protein sequence

MGYNSWKCRICGGTFNQCEISDVLDSAGLPNFAVTAWNSQRNLLPTVKNGRIFDIFSGSKEKKNEHLSNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSEKSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLTWLEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK

Homology

[Close]

BLAST of Cla023295 vs. Swiss-Prot
Match: FAP3_ARATH (Fatty-acid-binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=FAP3 PE=1 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.4e-60
Identity = 120/179 (67.04%), Postives = 138/179 (77.09%), Query Frame = 1


Query: 67  LSNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSE 126
           L    +REK FAIIGVKVYAAG Y+N SI + L+AW GRSA  IQ DSSLF  IF++ +E
Sbjct: 108 LLGTGFREKKFAIIGVKVYAAGYYVNESILSGLSAWTGRSADEIQRDSSLFVSIFQAQAE 167

Query: 127 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLT 186
           KSLQIVLVRDVDGKTFWDALD+AISPRIK+P+  D +ALSTFR IF+ R L KG+ I LT
Sbjct: 168 KSLQIVLVRDVDGKTFWDALDEAISPRIKSPSSEDTTALSTFRGIFQNRPLNKGSVILLT 227

Query: 187 WLEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVL 246
           W+  + MLVS+S  G PT ++ TIES NVT ALFDVFFGDSPVSPTLK+S+A  LA  L
Sbjct: 228 WINTSNMLVSVSSGGLPTNVDATIESGNVTSALFDVFFGDSPVSPTLKSSVANQLAMTL 286

[Close]

BLAST of Cla023295 vs. Swiss-Prot
Match: CFI_CITSI (Chalcone--flavonone isomerase OS=Citrus sinensis GN=CHI PE=2 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 1.4e-08
Identity = 45/170 (26.47%), Postives = 79/170 (46.47%), Query Frame = 1


Query: 82  VKVYAAGLYI-NPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSEKSLQIVLVRDVDGK 141
           VK  A G+Y+ + ++      W+G++A  + E    F  +   P EK +++ ++  + G 
Sbjct: 47  VKFTAIGVYLEDDAVPLLAGKWKGKTAEELTESVEFFRDVVTGPFEKFMKVTMILPLTGA 106

Query: 142 TFWDALDD---AISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLTWLEPAKMLVSI 201
            + + + +   AI       T  +  A+  F  +F+      G+ I  T   P  + +S 
Sbjct: 107 QYSEKVAENCIAIWKFFGIYTDAEAKAIEKFTEVFKDEIFPPGSSILFTQ-SPGSLTISF 166

Query: 202 SVDG--PPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVL 246
           S DG  P  G+   IESN ++ A+ +   G + VSP  K S+A  L+A+L
Sbjct: 167 SKDGSIPKDGVA-VIESNLLSEAVLESMIGKNGVSPAAKKSLAERLSALL 214

[Close]

BLAST of Cla023295 vs. Swiss-Prot
Match: CFI_CANGE (Chalcone--flavonone isomerase OS=Canna generalis GN=CHI PE=2 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.8e-08
Identity = 45/168 (26.79%), Postives = 81/168 (48.21%), Query Frame = 1


Query: 86  AAGLYINPSISNELNA-WRGRSAAAIQEDSSLFNIIFKSPSEKSLQIVLVRDVDGKTFWD 145
           A G+Y+     + L   W+G++A  +  +S  F  IF  P EK  +I +V+ + G+ + +
Sbjct: 52  AIGVYLEDLAVSTLGPKWKGKTADDLAGNSDFFRDIFTGPFEKFTRITMVKPLSGQQYSE 111

Query: 146 ALDDAISPRIKAP---TPVDESALSTFRSIFEGRSLKKGTFIFLT-WLEPAKMLVSISVD 205
            +++      KA    T  + +A+  F+   +  +   GT I  T  + PA + ++   +
Sbjct: 112 KVEENCVAHWKAAGTYTEAEAAAVEKFKEACKNETFPPGTSILFTHQVSPASLTITFWRE 171

Query: 206 G--PPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 247
           G  P TG    IES  ++ A+ +   G   VSP  K S+A  L+ +L+
Sbjct: 172 GSMPETG-NTVIESKALSEAILESIIGKHGVSPGAKRSVAQRLSEILE 218

[Close]

BLAST of Cla023295 vs. Swiss-Prot
Match: CFI_CALCH (Chalcone--flavonone isomerase (Fragment) OS=Callistephus chinensis GN=CHI PE=2 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 7.5e-07
Identity = 40/170 (23.53%), Postives = 74/170 (43.53%), Query Frame = 1


Query: 82  VKVYAAGLYINPSISNELNAWR-GRSAAAIQEDSSLFNIIFKSPSEKSLQIVLVRDVDGK 141
           VK    G+Y+       L A R G++ A + +    F  I   P EK  Q+ ++  + GK
Sbjct: 47  VKFTGIGVYLEDKAIPLLAAKRKGKTVAELLDSVEFFRDIVTGPFEKFTQVTMILPLTGK 106

Query: 142 TFWDALDD---AISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLTWLEPAKMLVSI 201
            + + + +    +   +   T  D + +  F  +F+  +   G+ I  T      + +S 
Sbjct: 107 QYSEKVSEMCVGVWKALGTYTDADGTTIEKFLEVFKDENFLPGSSILFTTSPLGSLTISF 166

Query: 202 SVDGP-PTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 247
           S DG  P      +E+  +  A+ +   G + VSP  K S+A+ L+ ++K
Sbjct: 167 SKDGTIPEAANVVLENEKLAQAVIESVIGKNGVSPATKQSLASRLSDLMK 216

[Close]

BLAST of Cla023295 vs. Swiss-Prot
Match: CFI1_PETHY (Chalcone--flavonone isomerase A OS=Petunia hybrida GN=CHI1 PE=2 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 2.2e-06
Identity = 41/170 (24.12%), Postives = 72/170 (42.35%), Query Frame = 1


Query: 82  VKVYAAGLYINPSISNEL-NAWRGRSAAAIQEDSSLFNIIFKSPSEKSLQIVLVRDVDGK 141
           VK  A G+Y+  S    L   W+G++   + +    F  +   P EK  ++ ++  + GK
Sbjct: 47  VKFTAIGVYLEESAIPFLAEKWKGKTPQELTDSVEFFRDVVTGPFEKFTRVTMILPLTGK 106

Query: 142 TFWDALDD---AISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLTWLEPAKMLVSI 201
            + + + +   A    I   T  +  A+  F  +F   +   G  I  T      + +S 
Sbjct: 107 QYSEKVAENCVAHWKGIGTYTDDEGRAIEKFLDVFRSETFPPGASIMFTQSPLGLLTISF 166

Query: 202 SVDGPPTGIEDT-IESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 247
           + D   TG  +  IE+  ++ A+ +   G   VSP  K S+A  +A +LK
Sbjct: 167 AKDDSVTGTANAVIENKQLSEAVLESIIGKHGVSPAAKCSVAERVAELLK 216

[Close]

BLAST of Cla023295 vs. TrEMBL
Match: A0A067EAL6_CITSI (Chalcone-flavonone isomerase family protein OS=Citrus sinensis GN=CISIN_1g023649mg PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 4.2e-73
Identity = 140/180 (77.78%), Postives = 162/180 (90.00%), Query Frame = 1


Query: 67  LSNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSE 126
           L    YREKVFAIIGVKVYAAGLYIN SI ++LNAW+G+ AA IQEDSSLF+ I+++PSE
Sbjct: 100 LLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSE 159

Query: 127 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLT 186
           KSL+IVLVRDVDGKTFWDALDDAISPRI+ PTPVDESALSTFRSIF+GR+L KGTFIFLT
Sbjct: 160 KSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLT 219

Query: 187 WLEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 246
           WL+P+KMLVSIS DG P+G++ TIES NVT AL+DVFFG +PVSP+LKAS+ATGLA +LK
Sbjct: 220 WLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279

[Close]

BLAST of Cla023295 vs. TrEMBL
Match: V4VR96_9ROSI (Chalcone-flavonone isomerase family protein OS=Citrus clementina GN=CICLE_v10021578mg PE=3 SV=1)

HSP 1 Score: 282.7 bits (722), Expect = 4.2e-73
Identity = 140/180 (77.78%), Postives = 162/180 (90.00%), Query Frame = 1


Query: 67  LSNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSE 126
           L    YREKVFAIIGVKVYAAGLYIN SI ++LNAW+G+ AA IQEDSSLF+ I+++PSE
Sbjct: 100 LLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSE 159

Query: 127 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLT 186
           KSL+IVLVRDVDGKTFWDALDDAISPRI+ PTPVDESALSTFRSIF+GR+L KGTFIFLT
Sbjct: 160 KSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLT 219

Query: 187 WLEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 246
           WL+P+KMLVSIS DG P+G++ TIES NVT AL+DVFFG +PVSP+LKAS+ATGLA +LK
Sbjct: 220 WLDPSKMLVSISGDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279

[Close]

BLAST of Cla023295 vs. TrEMBL
Match: E0CRY9_VITVI (Chalcone-flavonone isomerase family protein OS=Vitis vinifera GN=VIT_19s0014g00100 PE=3 SV=1)

HSP 1 Score: 280.8 bits (717), Expect = 1.6e-72
Identity = 141/180 (78.33%), Postives = 160/180 (88.89%), Query Frame = 1


Query: 67  LSNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSE 126
           L    YREKVFAIIGVKVYAAGLY+N SISN+LNAW+GRSA  IQ DSSLF+ IF+ P E
Sbjct: 104 LLGTGYREKVFAIIGVKVYAAGLYLNQSISNKLNAWKGRSATEIQGDSSLFDSIFQIPQE 163

Query: 127 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLT 186
           KSLQIVLVRDVDGKTFWDALD+AISPRIKAP+PVD SALSTFRSIF+GRSL+KGTFIFLT
Sbjct: 164 KSLQIVLVRDVDGKTFWDALDEAISPRIKAPSPVDVSALSTFRSIFQGRSLRKGTFIFLT 223

Query: 187 WLEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 246
           W+EP+KMLV IS DG P+ ++ TI+S NVT+ALFDVFFG+SPVSP+LKAS+A GLA VLK
Sbjct: 224 WMEPSKMLVCISSDGLPSSVDATIKSMNVTMALFDVFFGNSPVSPSLKASVANGLATVLK 283

[Close]

BLAST of Cla023295 vs. TrEMBL
Match: A5C8D5_VITVI (Chalcone-flavonone isomerase family protein OS=Vitis vinifera GN=VITISV_004495 PE=3 SV=1)

HSP 1 Score: 280.4 bits (716), Expect = 2.1e-72
Identity = 140/179 (78.21%), Postives = 160/179 (89.39%), Query Frame = 1


Query: 68  SNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSEK 127
           +N  YREKVFAIIGVKVYAAGLY+N SISN+LNAW+GRSA  IQ DSSLF+ IF+ P EK
Sbjct: 56  NNSGYREKVFAIIGVKVYAAGLYLNQSISNKLNAWKGRSATEIQGDSSLFDSIFQIPLEK 115

Query: 128 SLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLTW 187
           SLQIVLVRDVDGKTFWDALD+AISPRIKAP+PVD SALSTFRSIF+GRSL+KGTFIFLTW
Sbjct: 116 SLQIVLVRDVDGKTFWDALDEAISPRIKAPSPVDVSALSTFRSIFQGRSLRKGTFIFLTW 175

Query: 188 LEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 247
           +EP+KMLV IS DG P+ ++ TI+S NVT+ LFDVFFG+SPVSP+LKAS+A GLA VLK
Sbjct: 176 MEPSKMLVCISSDGLPSSVDATIKSMNVTMVLFDVFFGNSPVSPSLKASVANGLATVLK 234

[Close]

BLAST of Cla023295 vs. TrEMBL
Match: M5WV36_PRUPE (Chalcone-flavonone isomerase family protein OS=Prunus persica GN=PRUPE_ppa011189mg PE=3 SV=1)

HSP 1 Score: 276.9 bits (707), Expect = 2.3e-71
Identity = 138/180 (76.67%), Postives = 157/180 (87.22%), Query Frame = 1


Query: 67  LSNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSE 126
           L    YREKVFAIIGVKVYAAGLY+N SI N LNAW+GRSAA IQEDSSLF+ IF+SP E
Sbjct: 41  LLGTGYREKVFAIIGVKVYAAGLYVNQSILNSLNAWKGRSAAEIQEDSSLFSTIFQSPLE 100

Query: 127 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLT 186
           KSLQIVLVRDV+GKTFWDAL+DAISPRIK+PTPVDESALSTFRSIF+G+ LKKGTFIFLT
Sbjct: 101 KSLQIVLVRDVEGKTFWDALNDAISPRIKSPTPVDESALSTFRSIFQGQPLKKGTFIFLT 160

Query: 187 WLEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 246
           W +P+KMLV IS DG P+ ++  IES NV LALFDVFFGD+PVSP+LK+S+  GL +VLK
Sbjct: 161 WPDPSKMLVCISADGLPSSVDAAIESENVALALFDVFFGDTPVSPSLKSSVVNGLESVLK 220

[Close]

BLAST of Cla023295 vs. NCBI nr
Match: gi|449456545|ref|XP_004146009.1| (PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 6.4e-83
Identity = 162/180 (90.00%), Postives = 169/180 (93.89%), Query Frame = 1


Query: 67  LSNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSE 126
           L    YREKVFAIIGVKVYAAGLYIN S+SNELNAWRGRSAAAIQEDSSLF+IIF+S SE
Sbjct: 99  LLGTGYREKVFAIIGVKVYAAGLYINSSVSNELNAWRGRSAAAIQEDSSLFDIIFQSRSE 158

Query: 127 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLT 186
           KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTP DESALSTFRSIFEGRSLKKGTFIFLT
Sbjct: 159 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPDDESALSTFRSIFEGRSLKKGTFIFLT 218

Query: 187 WLEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 246
           WLEP KMLVSIS+DG PTGI+ TIESNNVT +LFDVFFGDSPVSPTLKAS+ATGLAAVLK
Sbjct: 219 WLEPPKMLVSISIDGSPTGIDATIESNNVTSSLFDVFFGDSPVSPTLKASVATGLAAVLK 278

[Close]

BLAST of Cla023295 vs. NCBI nr
Match: gi|778695591|ref|XP_011654021.1| (PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis sativus])

HSP 1 Score: 315.8 bits (808), Expect = 6.4e-83
Identity = 162/180 (90.00%), Postives = 169/180 (93.89%), Query Frame = 1


Query: 67  LSNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSE 126
           L    YREKVFAIIGVKVYAAGLYIN S+SNELNAWRGRSAAAIQEDSSLF+IIF+S SE
Sbjct: 95  LLGTGYREKVFAIIGVKVYAAGLYINSSVSNELNAWRGRSAAAIQEDSSLFDIIFQSRSE 154

Query: 127 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLT 186
           KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTP DESALSTFRSIFEGRSLKKGTFIFLT
Sbjct: 155 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPDDESALSTFRSIFEGRSLKKGTFIFLT 214

Query: 187 WLEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 246
           WLEP KMLVSIS+DG PTGI+ TIESNNVT +LFDVFFGDSPVSPTLKAS+ATGLAAVLK
Sbjct: 215 WLEPPKMLVSISIDGSPTGIDATIESNNVTSSLFDVFFGDSPVSPTLKASVATGLAAVLK 274

[Close]

BLAST of Cla023295 vs. NCBI nr
Match: gi|659103021|ref|XP_008452433.1| (PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis melo])

HSP 1 Score: 314.7 bits (805), Expect = 1.4e-82
Identity = 162/180 (90.00%), Postives = 169/180 (93.89%), Query Frame = 1


Query: 67  LSNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSE 126
           L    YREKVFAIIGVKVYAAGLYIN S+SNELNAWRGRSAAAIQEDSSLF+IIF+S SE
Sbjct: 133 LLGTGYREKVFAIIGVKVYAAGLYINSSVSNELNAWRGRSAAAIQEDSSLFDIIFQSCSE 192

Query: 127 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLT 186
           KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTP DESALSTFRSIFEGRSLKKGTFIFLT
Sbjct: 193 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTFIFLT 252

Query: 187 WLEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 246
           WLEP KMLVSIS++GPPTGI+ TIESNNVT ALFDVFFGDSPVS TLKAS+ATGLAAVLK
Sbjct: 253 WLEPPKMLVSISINGPPTGIDATIESNNVTSALFDVFFGDSPVSSTLKASVATGLAAVLK 312

[Close]

BLAST of Cla023295 vs. NCBI nr
Match: gi|659103018|ref|XP_008452432.1| (PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis melo])

HSP 1 Score: 314.7 bits (805), Expect = 1.4e-82
Identity = 162/180 (90.00%), Postives = 169/180 (93.89%), Query Frame = 1


Query: 67  LSNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSE 126
           L    YREKVFAIIGVKVYAAGLYIN S+SNELNAWRGRSAAAIQEDSSLF+IIF+S SE
Sbjct: 137 LLGTGYREKVFAIIGVKVYAAGLYINSSVSNELNAWRGRSAAAIQEDSSLFDIIFQSCSE 196

Query: 127 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLT 186
           KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTP DESALSTFRSIFEGRSLKKGTFIFLT
Sbjct: 197 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPGDESALSTFRSIFEGRSLKKGTFIFLT 256

Query: 187 WLEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 246
           WLEP KMLVSIS++GPPTGI+ TIESNNVT ALFDVFFGDSPVS TLKAS+ATGLAAVLK
Sbjct: 257 WLEPPKMLVSISINGPPTGIDATIESNNVTSALFDVFFGDSPVSSTLKASVATGLAAVLK 316

[Close]

BLAST of Cla023295 vs. NCBI nr
Match: gi|568847969|ref|XP_006477800.1| (PREDICTED: fatty-acid-binding protein 3, chloroplastic [Citrus sinensis])

HSP 1 Score: 285.4 bits (729), Expect = 9.3e-74
Identity = 141/180 (78.33%), Postives = 163/180 (90.56%), Query Frame = 1


Query: 67  LSNRSYREKVFAIIGVKVYAAGLYINPSISNELNAWRGRSAAAIQEDSSLFNIIFKSPSE 126
           L    YREKVFAIIGVKVYAAGLYIN SI ++LNAW+G+ AA IQEDSSLF+ I+++PSE
Sbjct: 100 LLGTGYREKVFAIIGVKVYAAGLYINQSILSKLNAWKGKGAANIQEDSSLFDTIYQAPSE 159

Query: 127 KSLQIVLVRDVDGKTFWDALDDAISPRIKAPTPVDESALSTFRSIFEGRSLKKGTFIFLT 186
           KSL+IVLVRDVDGKTFWDALDDAISPRI+ PTPVDESALSTFRSIF+GR+L KGTFIFLT
Sbjct: 160 KSLKIVLVRDVDGKTFWDALDDAISPRIRIPTPVDESALSTFRSIFQGRNLMKGTFIFLT 219

Query: 187 WLEPAKMLVSISVDGPPTGIEDTIESNNVTLALFDVFFGDSPVSPTLKASIATGLAAVLK 246
           WL+P+KMLVSISVDG P+G++ TIES NVT AL+DVFFG +PVSP+LKAS+ATGLA +LK
Sbjct: 220 WLDPSKMLVSISVDGLPSGVDATIESENVTFALYDVFFGGAPVSPSLKASVATGLATILK 279

The following BLAST results are available for this feature:

BLAST of Cla023295 vs. Swiss-Prot


Match Name	E-value	Identity	Description
FAP3_ARATH	3.4e-60	67.04	Fatty-acid-binding protein 3, chloroplastic OS=Arabidopsis thaliana GN=FAP3 PE=1...	[more]
CFI_CITSI	1.4e-08	26.47	Chalcone--flavonone isomerase OS=Citrus sinensis GN=CHI PE=2 SV=1	[more]
CFI_CANGE	1.8e-08	26.79	Chalcone--flavonone isomerase OS=Canna generalis GN=CHI PE=2 SV=1	[more]
CFI_CALCH	7.5e-07	23.53	Chalcone--flavonone isomerase (Fragment) OS=Callistephus chinensis GN=CHI PE=2 S...	[more]
CFI1_PETHY	2.2e-06	24.12	Chalcone--flavonone isomerase A OS=Petunia hybrida GN=CHI1 PE=2 SV=1	[more]

BLAST of Cla023295 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A067EAL6_CITSI	4.2e-73	77.78	Chalcone-flavonone isomerase family protein OS=Citrus sinensis GN=CISIN_1g023649...	[more]
V4VR96_9ROSI	4.2e-73	77.78	Chalcone-flavonone isomerase family protein OS=Citrus clementina GN=CICLE_v10021...	[more]
E0CRY9_VITVI	1.6e-72	78.33	Chalcone-flavonone isomerase family protein OS=Vitis vinifera GN=VIT_19s0014g001...	[more]
A5C8D5_VITVI	2.1e-72	78.21	Chalcone-flavonone isomerase family protein OS=Vitis vinifera GN=VITISV_004495 P...	[more]
M5WV36_PRUPE	2.3e-71	76.67	Chalcone-flavonone isomerase family protein OS=Prunus persica GN=PRUPE_ppa011189...	[more]

BLAST of Cla023295 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449456545\|ref\|XP_004146009.1\|	6.4e-83	90.00	PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis sativus]	[more]
gi\|778695591\|ref\|XP_011654021.1\|	6.4e-83	90.00	PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis sativus]	[more]
gi\|659103021\|ref\|XP_008452433.1\|	1.4e-82	90.00	PREDICTED: fatty-acid-binding protein 3 isoform X2 [Cucumis melo]	[more]
gi\|659103018\|ref\|XP_008452432.1\|	1.4e-82	90.00	PREDICTED: fatty-acid-binding protein 3 isoform X1 [Cucumis melo]	[more]
gi\|568847969\|ref\|XP_006477800.1\|	9.3e-74	78.33	PREDICTED: fatty-acid-binding protein 3, chloroplastic [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016087	Chalcone_isomerase
IPR016088	Chalcone_isomerase_3-sand

Vocabulary: **Molecular Function**
Term	Definition
GO:0016872	intramolecular lyase activity
GO:0045430	chalcone isomerase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0009813	flavonoid biosynthetic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006631	fatty acid metabolic process
biological_process	GO:0009813	flavonoid biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0045430	chalcone isomerase activity
molecular_function	GO:0005504	fatty acid binding
molecular_function	GO:0016872	intramolecular lyase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU42983	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla023295	Cla023295.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU42983	WMU42983	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016087	Chalcone isomerase	PFAM	PF02431	Chalcone	coord: 82..242 score: 1.5
IPR016087	Chalcone isomerase	unknown	SSF54626	Chalcone isomerase	coord: 63..246 score: 1.44
IPR016088	Chalcone isomerase, 3-layer sandwich	GENE3D	G3DSA:3.50.70.10		coord: 71..220 score: 1.0
None	No IPR available	PANTHER	PTHR28039	FAMILY NOT NAMED	coord: 72..245 score: 2.4
None	No IPR available	PANTHER	PTHR28039:SF6	ALTERED INHERITANCE OF MITOCHONDRIA PROTEIN 18, MITOCHONDRIAL-RELATED	coord: 72..245 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla023295	Cla97C11G223090	Watermelon (97103) v2	wmwmbB358
Cla023295	Csa4G622760	Cucumber (Chinese Long) v2	cuwmB349
Cla023295	MELO3C016680	Melon (DHL92) v3.5.1	mewmB543
Cla023295	ClCG11G017050	Watermelon (Charleston Gray)	wcgwmB103
Cla023295	CSPI04G22370	Wild cucumber (PI 183967)	cpiwmB356
Cla023295	Cucsa.058090	Cucumber (Gy14) v1	cgywmB047
Cla023295	CmaCh09G006840	Cucurbita maxima (Rimu)	cmawmB038
Cla023295	CmoCh09G006670	Cucurbita moschata (Rifu)	cmowmB030
Cla023295	Lsi04G019660	Bottle gourd (USVL1VR-Ls)	lsiwmB333
Cla023295	Cp4.1LG06g05380	Cucurbita pepo (Zucchini)	cpewmB776
Cla023295	CsGy4G020870	Cucumber (Gy14) v2	cgybwmB326
Cla023295	MELO3C016680.2	Melon (DHL92) v3.6.1	medwmB528
Cla023295	Carg03088	Silver-seed gourd	carwmB0635
Cla023295	CsaV3_4G032710	Cucumber (Chinese Long) v3	cucwmB367
Cla023295	Bhi09G002922	Wax gourd	wgowmB641

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla023295	Melon (DHL92) v3.6.1	medwmB524
Cla023295	Silver-seed gourd	carwmB0304
Cla023295	Cucurbita maxima (Rimu)	cmawmB463
Cla023295	Cucurbita moschata (Rifu)	cmowmB457
Cla023295	Cucurbita pepo (Zucchini)	cpewmB581