Cla023002 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla023002
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Rhomboid-like protease (AHRD V1 -- A8JF94_CHLRE); contains Interpro domain(s) IPR002610 Peptidase S54, rhomboid
Location	Chr11 : 16358817 .. 16362736 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCAATTGCATTTGCTTCAGCAGCTTCATGGAGGCCGAATTTCAAAACCTCCTACACCATGCAAGCAAATGCCTACCGCTTCCATTTCTCATCTATCAAGCTTCACCTTAACCTCGCTCAGATTCCCTTCTCCGTTGTTCAATCCCTTCTCATCGTCTTTTGCCGTTCCCCAATTTAGAAATGTTCTTCGTCTCCGCGCGCGTTCCGTTTGTGCGAAGCCCATCACGATGTGCAAAATGAACGACGCAGGTTTTCCTTTTCTTTTCCGCTATTTGGAACAATATATATCTGTTTACTTATGATTTTATAGAGGAATTTTTGCTAACGTACGGCGGGATTTTGCGATTTTATTGATGAAGATGTGTGTGCGGTTGAATGAAAGTAAAGAAGAGTTTTGTTTTTAAATGTTTGTTAGATTTGATATCACAGTTGGAGCTGGGAAAACCGCTGCTGAATCGGAAACCGGAGAAGCGTGTGAATGGTATATTCTGGATTATTCTTCTCAACATTGGAATATATGTGGCTGATCACATTTTTCAGGCAGGGTTTCCGTTCTCTCATGTTTTCACGTTGTTGCCTTTCGAATCTTCGATACAGTGAAAAAAAATGCCCTCAAAATATTGCGAGAAAGTTGAGTTGTTGCAGAGCAGTTGGATGATTGTTTTTTAGGTCAATCCTATCATAAAAAGGAGAGTTTTTTTAGGTCAAACCTTTCTGTACTTTTCACCCATCTAGATGAATTAACTATTTGGTAAAGCTGATTGTTATAGGGCTTTAAGAGGATAATCCAATGCTAAGCAGATTAGATTATTAACTTTGGAACTCAAGGACACAACACAACCTATCCAAAAAGATATTAGATACAGAACCAAAGTGAGCTTGCAAAAAAAGGGGGTTCAATTGGTAAATTAATCTATCTATATATATATATACCATCGCAGAGTCAAACAATCGTAACTAAATCCAATAAGTCTTCAAAGTCTCTATGAGAACCACTGAAAGCTCTCCAATTGCACTCCTTCCACTCTTCCCAAAGAATCAACCATTGCAGTTTTCCTCTCGTACATACTTCAGCTTTTCTTTAAACATGACCACAAAGAAAATCCTGAACAATGAATTAGTCTATGGCTTGCTCCAACAAGAACCGAATTTCTAAAATAATCTTTCCCATTATATTGAAGTGTAAGTAGAGCAAAAGGATGCCTTTGGCATTCTCACTATTCTTGCACAAAGCGCCCCAATTGGGAAGAATAAAAGAACCTGAAAACTATTCCTTAAGCATTAAGGGAGTTGAGTTTCCACAACTAAGTTGTTAATAAAAACACTCACCTTTAGTGGGATCCTTCTACTCCAAATATCTATCGCTAACCTGTTGACAATAATGTTTGGAGCCCTCACAGGATGAACAAAGAGGGACTTACTCTCTAGTCTCTCCAAACTTTCAAAGACCAAATCCTTTTGTCCTCTCTGGAATTCAGATCCATACCAGTCAAGAAAACAGTAAAAAAAACTCAGTTTTTGTGTGAGATTCATTCTAAGAGTTAGGTTCATTATAAGCCTATCCACAATTATTAACAATTGGAAGGCTTTCCTATGGTCTTGCTTTAGGTAGAGGTTCCTTTAGGCTGTCCTTTCGGTTTTTGTGTATGAATTAATTTTCTCAGTTTCCTATTAATAAAAAAAGAAAAAAAAGGGTTAGGTTATTTTTCCTCACCTCATCCCACATGTCTGCAATGAACATCTCAAATTCTGCCCATTACAGCTGTTTGCGTACCAGAGCTTTGTTACTCGAGACCTAATTGACTATACCCAAACTTCCTCTCTCCAACAGAAGATAAACCAGTAATCATCAAATTAATTGACCAAAAAAAAGAGAAAAAGAACCAATTTGATTCTTTAAAATTAAAATAAACCTGGCCCAAGTATTAATGTTCATCTTTGGTGAGTTTTTCACCATCGGTTTTAAATGTTAACATTGAAAAGAATGAAGTACTATAACCCCGTTTAATAACCATTTCGCTTCTAGTTTTATATTTTTTTAACACTGTACTTGTTTTCTCACCATTTATTTCTTATAGTTCTCGCCTCTCTTAAAGAAGCATTTGGATTCCCCGTTATTTCATTTATTCAATGAAATGTTTCTTATCTAAAACGAATGAAGCATTTGGATTCTTAGCCAAATTCTAAACAACAAAAGTACTTATAGTTTTCAAAACTTGATAATCGAAATTCTAAACAAAAAAAAGTACTTATAGTTTTCAAAACTTGATAATCCAAATTCTAAACAAAAAAAGTACTTATAGTTTTTAAAACTTGATTGGAAGTAGTGAAGAAAACAATGAAACTCACAAGTGGAAAAAGTACTTGTAAGCTTAATTTTTTAAAAACAAAATATTAAATGGCTATCAAACTGTGCCTAAGTTATCCTTTTTTTACAGGTTCGTAGTGTAGGAGCTTTGTACCTGTATCACAATCGCCCTGCCTGGTATCAATTTTTTACGGCAACATTTTGTCATGCTAATTGGTGAGTTTTTTGTGCTTTCATCATCCAAATTTCAGATTTCTCATCTATTCTTAGGATCAGTGGAGTTTACACACACAAGCAGAAGCTTGCTTATCTTCTCACGAGAATGCAATTTGCTGCTTTTACAAGCATTGTTTAATGTAGTGCTTGCTATTCTTAATGTTTGCAGGAATCATCTCTCTAGCAATCTTTTTTTCTTGTATATATTTGGTGAGAACCACTTTCCAAATCCTTATTATTTTTCTCCCTATATATGGGATCTACCTTCTTTCTGGAAGGTGGAAACCATAAAATAACCAAAATGTTTTGACATTTAATAGTTCCATTTCCTGTGGTCAACAGGGAAACTTGTTGAGGAAGAGGAAGGAAACTTTGCTTTGTGGCTTTCCTATATTCTTACGGGTGTAGGTGCAAACATTGTTTCATGGCTAATTTTACCAAGAAATGCTGTTTCAGTTGGAGCTTCTGGTGCTGTTTTCGGGTTGTTTACCATAAGTGTTCTTGTAAAGGTAACTATCTAAAACATAATGATTCAGCACTCTCATCAGGATTTTAATACATTTTAATTTAGTGATTCCTTCGTGGCAGATGTCTTGGGATTGGCGGAAGATACTTGAAGTCCTTATACTTGGTCAATTCGTTATAGAGAAGGTAATAAGTTCTCTTTCTACCCCTATGTCTATGATCTTAAAAACTTGGATACTGATAACTGATAAGCATCCTTCCCAAATTGGGGATTGGCTTGTCGGAAATGAAGTGATATAGTGTTCCTTCTTTCCATATCCCTAGTTAATTGGTTGTTTGTCAAATCATTCGAATGAATTAATTAGCATCGGTTTTTCTTTTTCTTTCCATAATATAAAAATAATCTTTTAATTAGCATATTGTCGTCTCAAAAGATCAAGAAACTCCTCTTTCCCATGAATTTGGGAGGCACCTTTTCCAAAAGGGAAAAAGAAGCTTCTTTGGAAGAATTTTATTCAAACGTTCTGCGCGAACATGTGGTCAAATAGAAGAATATTCCAAGAAAAAGAACTCTCTTATTATAGATTTTTCAATGCGTTTTGACATGGTGTAATATTCCTCCTTATTCCTCTCTTTCGTAATCTCTTTATTGGGGCTTCCTCTTTTGTAATTTGCAATTGTGCAAGGCAAAGGTAGGGCAGTTGCTTATCCTAATGTTTTTTCTGGTCATAATAGGTCATGGAAGCAGCTCAAGCGTCGACTGCATTTTCGGGAAGCTTCCGTGGAGGACATTCGTTGCAGAATGTCAACCATGTTGCACATCTCTCCGGGGCACTGGTCGGCGTCCTTCTAGTATGGCTTCTCAGTAGAATTCCTTCTCAATCTCCTGAACAAGATGCATCAACTTTGCATACGAAAGGAAGGTGA

mRNA sequence

ATGATGCAATTGCATTTGCTTCAGCAGCTTCATGGAGGCCGAATTTCAAAACCTCCTACACCATGCAAGCAAATGCCTACCGCTTCCATTTCTCATCTATCAAGCTTCACCTTAACCTCGCTCAGATTCCCTTCTCCGTTGTTCAATCCCTTCTCATCGTCTTTTGCCGTTCCCCAATTTAGAAATGTTCTTCGTCTCCGCGCGCGTTCCGTTTGTGCGAAGCCCATCACGATGTGCAAAATGAACGACGCAGATTTGATATCACAGTTGGAGCTGGGAAAACCGCTGCTGAATCGGAAACCGGAGAAGCGTGTGAATGGGAAACTTGTTGAGGAAGAGGAAGGAAACTTTGCTTTGTGGCTTTCCTATATTCTTACGGGTGTAGGTGCAAACATTGTTTCATGGCTAATTTTACCAAGAAATGCTGTTTCAGTTGGAGCTTCTGGTGCTGTTTTCGGGTTGTTTACCATAAGTGTTCTTGTAAAGATGTCTTGGGATTGGCGGAAGATACTTGAAGTCCTTATACTTGGTCAATTCGTTATAGAGAAGGTCATGGAAGCAGCTCAAGCGTCGACTGCATTTTCGGGAAGCTTCCGTGGAGGACATTCGTTGCAGAATGTCAACCATGTTGCACATCTCTCCGGGGCACTGGTCGGCGTCCTTCTAGTATGGCTTCTCAGTAGAATTCCTTCTCAATCTCCTGAACAAGATGCATCAACTTTGCATACGAAAGGAAGGTGA

Coding sequence (CDS)

ATGATGCAATTGCATTTGCTTCAGCAGCTTCATGGAGGCCGAATTTCAAAACCTCCTACACCATGCAAGCAAATGCCTACCGCTTCCATTTCTCATCTATCAAGCTTCACCTTAACCTCGCTCAGATTCCCTTCTCCGTTGTTCAATCCCTTCTCATCGTCTTTTGCCGTTCCCCAATTTAGAAATGTTCTTCGTCTCCGCGCGCGTTCCGTTTGTGCGAAGCCCATCACGATGTGCAAAATGAACGACGCAGATTTGATATCACAGTTGGAGCTGGGAAAACCGCTGCTGAATCGGAAACCGGAGAAGCGTGTGAATGGGAAACTTGTTGAGGAAGAGGAAGGAAACTTTGCTTTGTGGCTTTCCTATATTCTTACGGGTGTAGGTGCAAACATTGTTTCATGGCTAATTTTACCAAGAAATGCTGTTTCAGTTGGAGCTTCTGGTGCTGTTTTCGGGTTGTTTACCATAAGTGTTCTTGTAAAGATGTCTTGGGATTGGCGGAAGATACTTGAAGTCCTTATACTTGGTCAATTCGTTATAGAGAAGGTCATGGAAGCAGCTCAAGCGTCGACTGCATTTTCGGGAAGCTTCCGTGGAGGACATTCGTTGCAGAATGTCAACCATGTTGCACATCTCTCCGGGGCACTGGTCGGCGTCCTTCTAGTATGGCTTCTCAGTAGAATTCCTTCTCAATCTCCTGAACAAGATGCATCAACTTTGCATACGAAAGGAAGGTGA

Protein sequence

MMQLHLLQQLHGGRISKPPTPCKQMPTASISHLSSFTLTSLRFPSPLFNPFSSSFAVPQFRNVLRLRARSVCAKPITMCKMNDADLISQLELGKPLLNRKPEKRVNGKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLLSRIPSQSPEQDASTLHTKGR

Homology

[Close]

BLAST of Cla023002 vs. Swiss-Prot
Match: RBL11_ARATH (Rhomboid-like protein 11, chloroplastic OS=Arabidopsis thaliana GN=RBL11 PE=1 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 2.7e-57
Identity = 109/131 (83.21%), Postives = 117/131 (89.31%), Query Frame = 1


Query: 107 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 166
           GKLVEEEEGNF LWLSY+ TGVGAN+VSWL+LPRNAVSVGASGAVFGLF ISVLVKMSWD
Sbjct: 145 GKLVEEEEGNFGLWLSYLFTGVGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKMSWD 204

Query: 167 WRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLL 226
           WRKILEVLILGQFVIE+VMEAAQAS   SG+  GG+SLQ VNH+AHLSGALVGV+LVWLL
Sbjct: 205 WRKILEVLILGQFVIERVMEAAQASAGLSGTIYGGYSLQTVNHIAHLSGALVGVVLVWLL 264

Query: 227 SRIPSQSPEQD 238
           S+ PS S +QD
Sbjct: 265 SKFPSASMDQD 275

[Close]

BLAST of Cla023002 vs. TrEMBL
Match: A0A0A0LEK4_CUCSA (Rhomboid-like protein OS=Cucumis sativus GN=Csa_3G889110 PE=3 SV=1)

HSP 1 Score: 256.5 bits (654), Expect = 3.2e-65
Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 1


Query: 107 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 166
           GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD
Sbjct: 164 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 223

Query: 167 WRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLL 226
           WRKILEVLILGQFVIEKVMEAAQASTA SGSFR G+SLQNVNHVAHLSGALVGVLLVWLL
Sbjct: 224 WRKILEVLILGQFVIEKVMEAAQASTALSGSFR-GYSLQNVNHVAHLSGALVGVLLVWLL 283

Query: 227 SRIPSQSPEQDASTLHTKGR 247
           SR+PSQS +QDAS LH KGR
Sbjct: 284 SRVPSQSSDQDASALHRKGR 302

[Close]

BLAST of Cla023002 vs. TrEMBL
Match: A0A0A0LEK4_CUCSA (Rhomboid-like protein OS=Cucumis sativus GN=Csa_3G889110 PE=3 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 2.0e-27
Identity = 74/108 (68.52%), Postives = 79/108 (73.15%), Query Frame = 1


Query: 2   MQLHLLQQL-HGGRISKPPTPCK-QMPTASISHLSSFTLTSLRFPSPLFNPFSSSFAVPQ 61
           MQL L QQL HGGRISKPPT C  QMP  SIS  SSFTLTSLRF SP  +      ++PQ
Sbjct: 1   MQLQLQQQLLHGGRISKPPTLCNNQMPLTSISFQSSFTLTSLRFSSPFLH------SLPQ 60

Query: 62  FRNVLRLRARSVCAKPITMCKMNDADLISQLELGKPLLNRKPEKRVNG 108
           F +VL L +R  C KPI  CKMNDADLISQLELGKPL NRK EKRVNG
Sbjct: 61  FTHVLPLHSRFFCMKPIATCKMNDADLISQLELGKPLQNRKTEKRVNG 102

HSP 2 Score: 239.6 bits (610), Expect = 4.1e-60
Identity = 115/138 (83.33%), Postives = 128/138 (92.75%), Query Frame = 1


Query: 107 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 166
           G+LVEEEEGNF LWLSYILTG GAN+VSWL+LPRNAVSVGASGAVFGLF ISVLVK+SWD
Sbjct: 151 GRLVEEEEGNFGLWLSYILTGAGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKISWD 210

Query: 167 WRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLL 226
           WRKILEVLILGQFVIEKVMEAAQAST  SG+F GG+S+Q++NH+AHLSGAL+GVLLVWLL
Sbjct: 211 WRKILEVLILGQFVIEKVMEAAQASTGLSGTFLGGYSIQSINHIAHLSGALIGVLLVWLL 270

Query: 227 SRIPSQSPEQDASTLHTK 245
           SR+PSQ   Q+ STLHTK
Sbjct: 271 SRVPSQPSNQEVSTLHTK 288

[Close]

BLAST of Cla023002 vs. TrEMBL
Match: D7SUE3_VITVI (Rhomboid-like protein OS=Vitis vinifera GN=VIT_04s0008g03830 PE=3 SV=1)

HSP 1 Score: 41.2 bits (95), Expect = 2.1e+00
Identity = 27/76 (35.53%), Postives = 41/76 (53.95%), Query Frame = 1


Query: 37  TLTSLRFPSPLFNPFSSSFAVPQFRNVLRL----RARSVCAKPIT-MCKMNDADLISQLE 96
           T+  +  PS    P +++F+     + LR     R   + A P   +CKMN +DL SQ+E
Sbjct: 14  TIKLMPMPSASLLPINAAFSKLPTSSSLRFTPPTRLLPISAAPSRFVCKMNGSDLTSQME 73

Query: 97  LGKPLLNRKPEKRVNG 108
           LGK     KP+++VNG
Sbjct: 74  LGKSGGKWKPQRQVNG 89

HSP 2 Score: 237.3 bits (604), Expect = 2.0e-59
Identity = 116/138 (84.06%), Postives = 128/138 (92.75%), Query Frame = 1


Query: 107 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 166
           GKLVEEEEGNFALWLSYILTG GAN+VSWL+LPRNAVSVGASGAVFGLF ISVLVKMSWD
Sbjct: 153 GKLVEEEEGNFALWLSYILTGAGANLVSWLVLPRNAVSVGASGAVFGLFAISVLVKMSWD 212

Query: 167 WRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLL 226
           WRKILEVLILGQFVIE+VMEAA+AST+  GSFRGG++LQ+VNH+AHLSGAL+GV LVWLL
Sbjct: 213 WRKILEVLILGQFVIERVMEAARASTSLPGSFRGGYALQSVNHIAHLSGALIGVALVWLL 272

Query: 227 SRIPSQSPEQDASTLHTK 245
           SR+PS + EQDAS L  K
Sbjct: 273 SRVPSHAGEQDASALKKK 290

[Close]

BLAST of Cla023002 vs. TrEMBL
Match: A0A0A7E6L4_9APIA (Rhomboid-like protein OS=Hedera nepalensis PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 7.8e-03
Identity = 39/104 (37.50%), Postives = 49/104 (47.12%), Query Frame = 1


Query: 6   LLQQLHGGRISKPPTPCKQMPTASISHLSSFTLTSLRFPSPLFNPFSSSFAVPQFRNVLR 65
           LLQQLH   + KP             + SS   T +  PS  FNP         F+   R
Sbjct: 5   LLQQLH---MQKP-------------YFSSSCTTMVMAPSFKFNPLLPKLP-SSFQRFTR 64

Query: 66  LRA--RSVCAKPITMCKMNDADLISQLELGKPLLNRKPEKRVNG 108
           +    R    +   +CKM  +D+ISQLELGKP   RKP K+VNG
Sbjct: 65  INTPLRMQPNRSRFICKMKSSDMISQLELGKPEERRKPVKQVNG 91

HSP 2 Score: 234.2 bits (596), Expect = 1.7e-58
Identity = 114/130 (87.69%), Postives = 125/130 (96.15%), Query Frame = 1


Query: 107 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 166
           GKLVEEEEGNFALWLSYILTGVGAN+VSWL+LPRN VSVGASGAVFGLFTISVLVKMSWD
Sbjct: 83  GKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNTVSVGASGAVFGLFTISVLVKMSWD 142

Query: 167 WRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLL 226
           WRKILEVLILGQFVIEKVMEAAQAST+ SG+FRGG++LQ+VNH+AHLSGALVGVLLVWLL
Sbjct: 143 WRKILEVLILGQFVIEKVMEAAQASTSLSGTFRGGYALQSVNHIAHLSGALVGVLLVWLL 202

Query: 227 SRIPSQSPEQ 237
           S++PS   +Q
Sbjct: 203 SKVPSDPSDQ 212

[Close]

BLAST of Cla023002 vs. TrEMBL
Match: A0A151S5B9_CAJCA (Rhomboid-like protein OS=Cajanus cajan GN=KK1_028278 PE=3 SV=1)

HSP 1 Score: 31.6 bits (70), Expect = 1.7e+03
Identity = 15/21 (71.43%), Postives = 16/21 (76.19%), Query Frame = 1


Query: 87  ISQLELGKPLLNRKPEKRVNG 108
           +SQLELGKP    KP KRVNG
Sbjct: 1   MSQLELGKPDPKGKPHKRVNG 21

HSP 2 Score: 233.8 bits (595), Expect = 2.2e-58
Identity = 111/138 (80.43%), Postives = 125/138 (90.58%), Query Frame = 1


Query: 107 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 166
           GKLVEEEEGNF LWLSYILTGVGAN+VSWLILPRNAVS+GASGAVFGLFTISV VKMSWD
Sbjct: 171 GKLVEEEEGNFGLWLSYILTGVGANLVSWLILPRNAVSIGASGAVFGLFTISVFVKMSWD 230

Query: 167 WRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLL 226
           WRKILEV ILGQFV+E+VMEAAQASTA S  FRG  +LQ++NH+AHLSGALVGV LVWL+
Sbjct: 231 WRKILEVFILGQFVVERVMEAAQASTALSSGFRGSSALQSINHIAHLSGALVGVFLVWLI 290

Query: 227 SRIPSQSPEQDASTLHTK 245
           S++PS+ P+Q+ S LH K
Sbjct: 291 SKVPSEPPDQEVSKLHRK 308

[Close]

BLAST of Cla023002 vs. NCBI nr
Match: gi|659132528|ref|XP_008466246.1| (PREDICTED: protein rhomboid-like isoform X2 [Cucumis melo])

HSP 1 Score: 260.8 bits (665), Expect = 2.5e-66
Identity = 132/140 (94.29%), Postives = 134/140 (95.71%), Query Frame = 1


Query: 107 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 166
           GKLVEEEEGNFALWLSYILTGVGAN+VSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD
Sbjct: 82  GKLVEEEEGNFALWLSYILTGVGANVVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 141

Query: 167 WRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLL 226
           WRKILEVLILGQFVIEKVMEAAQASTA SGSFRGGH  QNVNHVAHLSGALVGVLLVWLL
Sbjct: 142 WRKILEVLILGQFVIEKVMEAAQASTALSGSFRGGHPSQNVNHVAHLSGALVGVLLVWLL 201

Query: 227 SRIPSQSPEQDASTLHTKGR 247
           SRIPSQS +QDAS LH KGR
Sbjct: 202 SRIPSQSLDQDASALHRKGR 221

[Close]

BLAST of Cla023002 vs. NCBI nr
Match: gi|659132528|ref|XP_008466246.1| (PREDICTED: protein rhomboid-like isoform X2 [Cucumis melo])

HSP 1 Score: 37.4 bits (85), Expect = 4.4e+01
Identity = 23/53 (43.40%), Postives = 27/53 (50.94%), Query Frame = 1


Query: 89  QLELGKPLLNRKPEKRVNGKLVEEEEGNFALWLSYILTGVGANIVSWLILPRN 142
           QLELGKPL NRK EKRVNG            W+  IL  +G  +   +   RN
Sbjct: 2   QLELGKPLQNRKTEKRVNG----------IFWI--ILLNIGIYVADHIFQVRN 42

HSP 2 Score: 260.8 bits (665), Expect = 2.5e-66
Identity = 132/140 (94.29%), Postives = 134/140 (95.71%), Query Frame = 1


Query: 107 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 166
           GKLVEEEEGNFALWLSYILTGVGAN+VSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD
Sbjct: 164 GKLVEEEEGNFALWLSYILTGVGANVVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 223

Query: 167 WRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLL 226
           WRKILEVLILGQFVIEKVMEAAQASTA SGSFRGGH  QNVNHVAHLSGALVGVLLVWLL
Sbjct: 224 WRKILEVLILGQFVIEKVMEAAQASTALSGSFRGGHPSQNVNHVAHLSGALVGVLLVWLL 283

Query: 227 SRIPSQSPEQDASTLHTKGR 247
           SRIPSQS +QDAS LH KGR
Sbjct: 284 SRIPSQSLDQDASALHRKGR 303

[Close]

BLAST of Cla023002 vs. NCBI nr
Match: gi|659132526|ref|XP_008466245.1| (PREDICTED: protein rhomboid-like isoform X1 [Cucumis melo])

HSP 1 Score: 132.9 bits (333), Expect = 7.7e-28
Identity = 81/142 (57.04%), Postives = 90/142 (63.38%), Query Frame = 1


Query: 2   MQLHLLQ-QLHGGRISKPPTPCK-QMPTASISHLSSFTLTSLRFPSPLFNPFSSSFAVPQ 61
           MQ  L Q QLHGGRISKPPT    QMP  SIS  SSFTLTSLRFPSP F+      ++PQ
Sbjct: 1   MQFQLQQLQLHGGRISKPPTLSNNQMPLTSISLQSSFTLTSLRFPSPFFH------SLPQ 60

Query: 62  FRNVLRLRARSVCAKPITMCKMNDADLISQLELGKPLLNRKPEKRVNGKLVEEEEGNFAL 121
           F +VL L +RS C KPI  CKMNDADLISQLELGKPL NRK EKRVNG            
Sbjct: 61  FTHVLPLHSRSFCMKPIATCKMNDADLISQLELGKPLQNRKTEKRVNG----------IF 120

Query: 122 WLSYILTGVGANIVSWLILPRN 142
           W+  IL  +G  +   +   RN
Sbjct: 121 WI--ILLNIGIYVADHIFQVRN 124

HSP 2 Score: 256.5 bits (654), Expect = 4.6e-65
Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 1


Query: 107 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 166
           GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD
Sbjct: 82  GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 141

Query: 167 WRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLL 226
           WRKILEVLILGQFVIEKVMEAAQASTA SGSFR G+SLQNVNHVAHLSGALVGVLLVWLL
Sbjct: 142 WRKILEVLILGQFVIEKVMEAAQASTALSGSFR-GYSLQNVNHVAHLSGALVGVLLVWLL 201

Query: 227 SRIPSQSPEQDASTLHTKGR 247
           SR+PSQS +QDAS LH KGR
Sbjct: 202 SRVPSQSSDQDASALHRKGR 220

[Close]

BLAST of Cla023002 vs. NCBI nr
Match: gi|449437036|ref|XP_004136298.1| (PREDICTED: presenilins-associated rhomboid-like protein, mitochondrial isoform X2 [Cucumis sativus])

HSP 1 Score: 37.0 bits (84), Expect = 5.8e+01
Identity = 17/19 (89.47%), Postives = 17/19 (89.47%), Query Frame = 1


Query: 89  QLELGKPLLNRKPEKRVNG 108
           QLELGKPL NRK EKRVNG
Sbjct: 2   QLELGKPLQNRKTEKRVNG 20

HSP 2 Score: 256.5 bits (654), Expect = 4.6e-65
Identity = 132/140 (94.29%), Postives = 135/140 (96.43%), Query Frame = 1


Query: 107 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 166
           GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD
Sbjct: 164 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 223

Query: 167 WRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLL 226
           WRKILEVLILGQFVIEKVMEAAQASTA SGSFR G+SLQNVNHVAHLSGALVGVLLVWLL
Sbjct: 224 WRKILEVLILGQFVIEKVMEAAQASTALSGSFR-GYSLQNVNHVAHLSGALVGVLLVWLL 283

Query: 227 SRIPSQSPEQDASTLHTKGR 247
           SR+PSQS +QDAS LH KGR
Sbjct: 284 SRVPSQSSDQDASALHRKGR 302

[Close]

BLAST of Cla023002 vs. NCBI nr
Match: gi|778687331|ref|XP_011652547.1| (PREDICTED: uncharacterized protein LOC101215506 isoform X1 [Cucumis sativus])

HSP 1 Score: 131.0 bits (328), Expect = 2.9e-27
Identity = 74/108 (68.52%), Postives = 79/108 (73.15%), Query Frame = 1


Query: 2   MQLHLLQQL-HGGRISKPPTPCK-QMPTASISHLSSFTLTSLRFPSPLFNPFSSSFAVPQ 61
           MQL L QQL HGGRISKPPT C  QMP  SIS  SSFTLTSLRF SP  +      ++PQ
Sbjct: 1   MQLQLQQQLLHGGRISKPPTLCNNQMPLTSISFQSSFTLTSLRFSSPFLH------SLPQ 60

Query: 62  FRNVLRLRARSVCAKPITMCKMNDADLISQLELGKPLLNRKPEKRVNG 108
           F +VL L +R  C KPI  CKMNDADLISQLELGKPL NRK EKRVNG
Sbjct: 61  FTHVLPLHSRFFCMKPIATCKMNDADLISQLELGKPLQNRKTEKRVNG 102

HSP 2 Score: 240.0 bits (611), Expect = 4.5e-60
Identity = 116/130 (89.23%), Postives = 126/130 (96.92%), Query Frame = 1


Query: 107 GKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWD 166
           GKLVEEEEGNFALWLSYILTGVGAN+VSWL+LPRNAVSVGASGAVFGLFTISVLVKMSWD
Sbjct: 165 GKLVEEEEGNFALWLSYILTGVGANLVSWLVLPRNAVSVGASGAVFGLFTISVLVKMSWD 224

Query: 167 WRKILEVLILGQFVIEKVMEAAQASTAFSGSFRGGHSLQNVNHVAHLSGALVGVLLVWLL 226
           WRKILEVLILGQFVIEKVM+AAQASTA SG FRGGH+LQ++NH+AHLSGALVGVLLVWLL
Sbjct: 225 WRKILEVLILGQFVIEKVMDAAQASTALSGPFRGGHALQSINHIAHLSGALVGVLLVWLL 284

Query: 227 SRIPSQSPEQ 237
            ++PS SP+Q
Sbjct: 285 RKVPSDSPDQ 294

The following BLAST results are available for this feature:

BLAST of Cla023002 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RBL11_ARATH	2.7e-57	83.21	Rhomboid-like protein 11, chloroplastic OS=Arabidopsis thaliana GN=RBL11 PE=1 SV...	[more]

BLAST of Cla023002 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEK4_CUCSA	3.2e-65	94.29	Rhomboid-like protein OS=Cucumis sativus GN=Csa_3G889110 PE=3 SV=1	[more]
A0A0A0LEK4_CUCSA	2.0e-27	68.52	Rhomboid-like protein OS=Cucumis sativus GN=Csa_3G889110 PE=3 SV=1	[more]
D7SUE3_VITVI	2.1e+00	35.53	Rhomboid-like protein OS=Vitis vinifera GN=VIT_04s0008g03830 PE=3 SV=1	[more]
A0A0A7E6L4_9APIA	7.8e-03	37.50	Rhomboid-like protein OS=Hedera nepalensis PE=2 SV=1	[more]
A0A151S5B9_CAJCA	1.7e+03	71.43	Rhomboid-like protein OS=Cajanus cajan GN=KK1_028278 PE=3 SV=1	[more]

BLAST of Cla023002 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659132528\|ref\|XP_008466246.1\|	2.5e-66	94.29	PREDICTED: protein rhomboid-like isoform X2 [Cucumis melo]	[more]
gi\|659132528\|ref\|XP_008466246.1\|	4.4e+01	43.40	PREDICTED: protein rhomboid-like isoform X2 [Cucumis melo]	[more]
gi\|659132526\|ref\|XP_008466245.1\|	7.7e-28	57.04	PREDICTED: protein rhomboid-like isoform X1 [Cucumis melo]	[more]
gi\|449437036\|ref\|XP_004136298.1\|	5.8e+01	89.47	PREDICTED: presenilins-associated rhomboid-like protein, mitochondrial isoform X...	[more]
gi\|778687331\|ref\|XP_011652547.1\|	2.9e-27	68.52	PREDICTED: uncharacterized protein LOC101215506 isoform X1 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002610	Peptidase_S54_rhomboid
IPR022764	Peptidase_S54_rhomboid_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006508	proteolysis
biological_process	GO:0080140	regulation of jasmonic acid metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0009706	chloroplast inner membrane
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0009507	chloroplast
molecular_function	GO:0004252	serine-type endopeptidase activity
molecular_function	GO:0019904	protein domain specific binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU44065	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla023002	Cla023002.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU44065	WMU44065	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002610	Peptidase S54, rhomboid	PANTHER	PTHR22936	RHOMBOID-RELATED	coord: 107..242 score: 1.9
IPR022764	Peptidase S54, rhomboid domain	GENE3D	G3DSA:1.20.1540.10		coord: 107..227 score: 3.3
IPR022764	Peptidase S54, rhomboid domain	PFAM	PF01694	Rhomboid	coord: 107..229 score: 3.3
None	No IPR available	PANTHER	PTHR22936:SF32	SUBFAMILY NOT NAMED	coord: 107..242 score: 1.9
None	No IPR available	unknown	SSF144091	Rhomboid-like	coord: 107..231 score: 2.75

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla023002	Cla97C11G219990	Watermelon (97103) v2	wmwmbB358
Cla023002	Csa3G889110	Cucumber (Chinese Long) v2	cuwmB271
Cla023002	MELO3C003582	Melon (DHL92) v3.5.1	mewmB387
Cla023002	ClCG11G014010	Watermelon (Charleston Gray)	wcgwmB103
Cla023002	CSPI03G44980	Wild cucumber (PI 183967)	cpiwmB272
Cla023002	Cucsa.311380	Cucumber (Gy14) v1	cgywmB572
Cla023002	CmaCh01G015960	Cucurbita maxima (Rimu)	cmawmB457
Cla023002	CmoCh01G016440	Cucurbita moschata (Rifu)	cmowmB451
Cla023002	Lsi04G022230	Bottle gourd (USVL1VR-Ls)	lsiwmB334
Cla023002	Cp4.1LG02g05020	Cucurbita pepo (Zucchini)	cpewmB584
Cla023002	CsGy3G042470	Cucumber (Gy14) v2	cgybwmB254
Cla023002	MELO3C003582.2	Melon (DHL92) v3.6.1	medwmB380
Cla023002	Carg25621	Silver-seed gourd	carwmB1009
Cla023002	CsaV3_3G047410	Cucumber (Chinese Long) v3	cucwmB280

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla023002	Wax gourd	wgowmB637
Cla023002	Cucurbita maxima (Rimu)	cmawmB036
Cla023002	Cucurbita moschata (Rifu)	cmowmB028
Cla023002	Wild cucumber (PI 183967)	cpiwmB169
Cla023002	Cucurbita pepo (Zucchini)	cpewmB774
Cla023002	Cucumber (Gy14) v2	cgybwmB157
Cla023002	Silver-seed gourd	carwmB0634
Cla023002	Watermelon (97103) v2	wmwmbB385