Carg25621 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25621
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Rhomboid protease
Location	Cucurbita_argyrosperma_scaffold_357 : 2749 .. 5963 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCTGCTCTGAAATACTGAACGATGCAGTCGCGGTTGCAGCAGCTCCATGGGAGCCGAATATTGAAACCTCGTGGACTACGCGAGCAAATGGCTACGACTTCCATTGCTCATCTCTCAAGATTCAGCTCAAGCTCACTCAGATTCTCCTCTCCATTATTTCATCCGCTCTCAGCGTCTCTTTCCCGTTGCTCAATTTAGCAATGTTCTTCGTCTTCGCGCTCGTTCCACTGCTGCGAAACCTATCGCGATGTGCAAAATGAACGATGCAGGTTGTTCTTTTTCTTTTTTTGTTCTTCTGCGGTATTTGCAACAAGCTATCTGTTTGTTTATGATTTTATTGTGGAATTTTTGCTGAATTAGAAGGGGGTTTTGTGATTTTTATTGATGAATATGCGTGCGGTTGAATGAAAGTAAAGAAGAATTTTGTTTTTAAATGTTTGTTAGATTTGATATCACAGTTGGAGCTGGGGAAACCACTGCAGAATCGGAAACCGGAGAAGCGTGTTAATGGTATATTCTGGATCATTCTTCTCAACATTGGAGTATATGTGGCCGATCACATTTTTCAGGTACGAGTTCTGTTACCACATGCTATCAAGTCTAATGCTATTTGCCTATAGAGATTGAGAAAGAAAGAGCCCCAAAATATTGCCCAAAAGTTGAGGAGTACTGAATGAACTATTTGTCAAAGCTGATTGTTATAGGGCATTAATAGGTTAATCCACTCGTAAGCAGATTATTAACAGTAAACCGTTCTTTTAGGGAATCTGAAAAGATACGTTCTAAAAGCATCAGATTCATAGCAGTCAACTTAGCTAGTAAAAAACTTGATTCTCGAGTTGAAGCAACTCAAAAGCTTAAGTTGATGGGTGATGGTAACTTTAATTATATCAACATTTTAACATTCTCCTTGTTTATGGGCTTGAAAGTTTGTAATATGCTCAACAAGTAGAAATCAATATTACTTGGGGAGTAGAGAATGGTAGGGTTCTTTTCTCTTTTTTTTTTTTTTTTTTTTTTTTTTTAATTTTGTGATAAGGAATCAACCCTAATGAAAGCTCTATACCAAATGATAAGGAATCAACCCAAATCCAAGAGAAAGCTCTAATGCAAAATGCTAAGGAATCACTATAAGGAAAGTAAGATTCGAATTACCTTATTGATAAAATATATTAAGTCAAGAACACTTGTTTGAGATCTGAGTCACTCCAGAAGTAAAACTGATCATGTCAAACTTGAATGATTGTACATGCAACCTAAACTATATAGAATTGCAAAGAAACTTAGTCTTTGGCAAAAGGAAAGCACAAATGCTCTTTTTATTCTTTGCAAAGATAACATATATGGCTTTATATAGCCTCAGAATGAGAACTCTTAACCTTCCATGAGGCATTCCTAGAGTAGAGTTGTAATTTTCATACTTTATGACCATAATTAACCACTATGTAAATAGGCTTTAAAATACATTAAAGAAACACCATAACTCTAAAGTACCATCCACCCAAAATTTGTAACCATCCAAGAATAAATGGAGCTTGATTCTTCTTTAATGTGGCATGAATTGCAACATCTTGTGATAATTTGAACAACATTTTCTTCACATCTTCCTTAAAATTTATCTTGTATGATTGATGCCTTTGGTTCATATCACTTTGTTACTCAAACACTGAGATGCTTGTACTCAATTACTAAATTCTCTTTTTCATAGGTTCGTAGTATAGGAAATCTGTACCTGTACCACAATCGTCCTGCATGGTATCAATTTTTTACAGCAACATTTTGTCATGCTAATTGGTGAGTTTTTGGGCTCTTCAAAATCATGCAAATTTTACATTTCTCGTCTACCCTGAATGGATCGGTGGAGTTAGAAGCTTGTTATCTTCTCATGAGAATGTAATTTTCTGGTTTTACAAGCATGACTTAGTGGAATACTTACTATTTCCATGAATGTTTTGCAGGAACCATCTCTCTAGCAATCTTTTTTTCTTGTATATATTTGGTGAGACCCACACTTGACTTCCCTCCCCTCCCCTCCAAGAAAATGAATGTTCTAATGTATGGATTTCTACTTTATTTCTTGGAGGTGGAAGCCATAAAATAACCCTAATGTTCTGACATTTAATAGTTCCATTATTTGTGATGAACAGGAAAACTTGTTGAGGAAGAGGAAGGAAACTTTGCTTTGTGGCTTTCCTATATTCTTACTGGTGTAGGTGCAAACATTGTTTCATGGCTAATTTTACCGAGAAATGCTGTATCAGTTGGAGCTTCTGGTGCTGTTTTTGGGTTGTTTACTATAAGTGTCCTTGTAAAGGTATCTATCAAAAACTTATGATTTATCACTCTCATTTCCATTTTGATACATTTTAACTAAGAAATTTCTTCGTGGCAGATGTCTTGGGATTGGAGGAAGATCCTTGAAGTCCTTATACTTGGTCAATTCGTTATAGAGAAGGTAGTGCATTCTCTTTTTACTCCCATGTGAATGATCTTAAACACTCGACAAGCAACTTTTCTAAATGGGAATGCATGTAACAGCGCAAGCTCACCTCACCGCGAGTAGATATTGTCCTCTTTGGGCTTTCTCTTTCAGGCTTTCCCTAAAGGTTTTTAAAACGCATCTGCTAGGAAGAGGTTTCCATACCCTTATGAAAAATGCTTTATTCTCCTCCCAATTGATGTGGGATCTCACAATGCATGACTACACTATGCAAGTCATTGCTTAAGATGTTCATTATTCTTTTGCTCTATCTTTTATCTAATGGATCCGACTAGTAAAAATATAGATATTGTCAATCTAAGTATAGTTCAATTAGTTAAGGTTTATATTCTCAAAAGATATCATAATCCTCTAACTTCCACATGTTGAACTAAAACAAAGTAACGGAATAGTTGAAATAGAATTAAAGTGTCTTTCTCTTTTCTTTTATTTCTAAAAGCATAAATCTTGTGGTTGGTTTGTGTAAAACATAAGGTGAGGGGAACTTGCTTATCCATATGCTTTGCTTGGTCACTATAGGTCATGGAAGCAGCCCAAGCTTCAACTGCACTGTCAGGAAGCTTCCGCGGAGGATCTGCCTTGCAGAATGTTAACCATGTTGCTCATCTCTCTGGGGCGCTCGTCGGTGTCGTTCTGGTATGGCTTCTCAGTAGAATTCCTTCTCAACCTCCTGGTGATCAAGATGCATCAACTTTGCACAGGAAAGTAAGATGA

mRNA sequence

AGCTGCTCTGAAATACTGAACGATGCAGTCGCGGTTGCAGCAGCTCCATGGGAGCCGAATATTGAAACCTCGTGGACTACGCGAGCAAATGGCTACGACTTCCATTGCTCATCTCTCAAGATTCAGCTCAAGCTCACTCAGATTCTCCTCTCCATTATTTCATCCGCTCTCAGCGTCTCTTTCCCGTTGCTCAATTTAGCAATGTTCTTCGTCTTCGCGCTCGTTCCACTGCTGCGAAACCTATCGCGATGTGCAAAATGAACGATGCAGATTTGATATCACAGTTGGAGCTGGGGAAACCACTGCAGAATCGGAAACCGGAGAAGCGTGTTAATGGTATATTCTGGATCATTCTTCTCAACATTGGAGTATATGTGGCCGATCACATTTTTCAGGTTCGTAGTATAGGAAATCTGTACCTGTACCACAATCGTCCTGCATGGTATCAATTTTTTACAGCAACATTTTGTCATGCTAATTGGAACCATCTCTCTAGCAATCTTTTTTTCTTGTATATATTTGGAAAACTTGTTGAGGAAGAGGAAGGAAACTTTGCTTTGTGGCTTTCCTATATTCTTACTGGTGTAGGTGCAAACATTGTTTCATGGCTAATTTTACCGAGAAATGCTGTATCAGTTGGAGCTTCTGGTGCTGTTTTTGGGTTGTTTACTATAAGTGTCCTTGTAAAGATGTCTTGGGATTGGAGGAAGATCCTTGAAGTCCTTATACTTGGTCAATTCGTTATAGAGAAGGTCATGGAAGCAGCCCAAGCTTCAACTGCACTGTCAGGAAGCTTCCGCGGAGGATCTGCCTTGCAGAATGTTAACCATGTTGCTCATCTCTCTGGGGCGCTCGTCGGTGTCGTTCTGGTATGGCTTCTCAGTAGAATTCCTTCTCAACCTCCTGGTGATCAAGATGCATCAACTTTGCACAGGAAAGTAAGATGA

Coding sequence (CDS)

ATGTGCAAAATGAACGATGCAGATTTGATATCACAGTTGGAGCTGGGGAAACCACTGCAGAATCGGAAACCGGAGAAGCGTGTTAATGGTATATTCTGGATCATTCTTCTCAACATTGGAGTATATGTGGCCGATCACATTTTTCAGGTTCGTAGTATAGGAAATCTGTACCTGTACCACAATCGTCCTGCATGGTATCAATTTTTTACAGCAACATTTTGTCATGCTAATTGGAACCATCTCTCTAGCAATCTTTTTTTCTTGTATATATTTGGAAAACTTGTTGAGGAAGAGGAAGGAAACTTTGCTTTGTGGCTTTCCTATATTCTTACTGGTGTAGGTGCAAACATTGTTTCATGGCTAATTTTACCGAGAAATGCTGTATCAGTTGGAGCTTCTGGTGCTGTTTTTGGGTTGTTTACTATAAGTGTCCTTGTAAAGATGTCTTGGGATTGGAGGAAGATCCTTGAAGTCCTTATACTTGGTCAATTCGTTATAGAGAAGGTCATGGAAGCAGCCCAAGCTTCAACTGCACTGTCAGGAAGCTTCCGCGGAGGATCTGCCTTGCAGAATGTTAACCATGTTGCTCATCTCTCTGGGGCGCTCGTCGGTGTCGTTCTGGTATGGCTTCTCAGTAGAATTCCTTCTCAACCTCCTGGTGATCAAGATGCATCAACTTTGCACAGGAAAGTAAGATGA

Protein sequence

MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYHNRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSGSFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQDASTLHRKVR

Homology

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BLAST of Carg25621 vs. NCBI nr
Match: XP_022940340.1 (rhomboid-like protein 11, chloroplastic [Cucurbita moschata])

HSP 1 Score: 462.2 bits (1188), Expect = 1.0e-126
Identity = 230/232 (99.14%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYH 60
           MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYH
Sbjct: 76  MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYH 135

Query: 61  NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW 120
           NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW
Sbjct: 136 NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW 195

Query: 121 LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS 180
           LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS
Sbjct: 196 LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS 255

Query: 181 GSFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQDASTLHRKVR 233
           GSFRGGSALQNVNHVAHLSGALVGV LVWLLSRIPSQPP DQDASTLHRKVR
Sbjct: 256 GSFRGGSALQNVNHVAHLSGALVGVFLVWLLSRIPSQPPDDQDASTLHRKVR 307

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BLAST of Carg25621 vs. NCBI nr
Match: XP_022981184.1 (rhomboid-like protein 11, chloroplastic [Cucurbita maxima])

HSP 1 Score: 459.9 bits (1182), Expect = 5.1e-126
Identity = 231/232 (99.57%), Postives = 231/232 (99.57%), Query Frame = 0


Query: 1   MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYH 60
           MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYH
Sbjct: 76  MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYH 135

Query: 61  NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW 120
           NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW
Sbjct: 136 NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW 195

Query: 121 LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS 180
           LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS
Sbjct: 196 LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS 255

Query: 181 GSFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQDASTLHRKVR 233
           GSFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPP DQDASTLHRKVR
Sbjct: 256 GSFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPP-DQDASTLHRKVR 306

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BLAST of Carg25621 vs. NCBI nr
Match: XP_023524317.1 (rhomboid-like protein 11, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 456.8 bits (1174), Expect = 4.3e-125
Identity = 230/232 (99.14%), Postives = 230/232 (99.14%), Query Frame = 0


Query: 1   MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYH 60
           MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIG LYLYH
Sbjct: 76  MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGALYLYH 135

Query: 61  NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW 120
           NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW
Sbjct: 136 NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW 195

Query: 121 LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS 180
           LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS
Sbjct: 196 LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS 255

Query: 181 GSFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQDASTLHRKVR 233
           GSFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPP DQDASTLHRKVR
Sbjct: 256 GSFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPP-DQDASTLHRKVR 306

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BLAST of Carg25621 vs. NCBI nr
Match: XP_022142618.1 (rhomboid-like protein 11, chloroplastic [Momordica charantia])

HSP 1 Score: 432.6 bits (1111), Expect = 8.7e-118
Identity = 217/232 (93.53%), Postives = 223/232 (96.12%), Query Frame = 0


Query: 1   MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYH 60
           MCKMND+DLISQLELGKP+Q+RKPEKRVNGIFWIILLNIG+YVADHIFQVR IG LYLYH
Sbjct: 76  MCKMNDSDLISQLELGKPVQSRKPEKRVNGIFWIILLNIGIYVADHIFQVRGIGALYLYH 135

Query: 61  NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW 120
           NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW
Sbjct: 136 NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW 195

Query: 121 LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS 180
           LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS
Sbjct: 196 LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS 255

Query: 181 GSFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQDASTLHRKVR 233
           GSFRGG +LQNVNHVAHLSGALVGVVLVWLLSRIPS P  DQD S L+RK R
Sbjct: 256 GSFRGGYSLQNVNHVAHLSGALVGVVLVWLLSRIPSPP--DQDVSPLNRKGR 305

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BLAST of Carg25621 vs. NCBI nr
Match: XP_008466245.1 (PREDICTED: rhomboid-like protein 11, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 431.0 bits (1107), Expect = 2.5e-117
Identity = 217/231 (93.94%), Postives = 221/231 (95.67%), Query Frame = 0


Query: 2   CKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYHN 61
           CKMNDADLISQLELGKPLQNRK EKRVNGIFWIILLNIG+YVADHIFQVR+IG LYLYHN
Sbjct: 74  CKMNDADLISQLELGKPLQNRKTEKRVNGIFWIILLNIGIYVADHIFQVRNIGALYLYHN 133

Query: 62  RPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWL 121
           RPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGAN+VSWL
Sbjct: 134 RPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANVVSWL 193

Query: 122 ILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG 181
           ILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG
Sbjct: 194 ILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG 253

Query: 182 SFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQDASTLHRKVR 233
           SFRGG   QNVNHVAHLSGALVGV+LVWLLSRIPSQ   DQDAS LHRK R
Sbjct: 254 SFRGGHPSQNVNHVAHLSGALVGVLLVWLLSRIPSQSL-DQDASALHRKGR 303

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BLAST of Carg25621 vs. TAIR10
Match: AT5G25752.1 (rhomboid-like protein 11)

HSP 1 Score: 360.9 bits (925), Expect = 5.8e-100
Identity = 175/222 (78.83%), Postives = 193/222 (86.94%), Query Frame = 0


Query: 2   CKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYHN 61
           C+ + +D+  Q EL K   NRKP+KR NGIFWIIL+N+G+Y+ADH FQVR I +LYLYHN
Sbjct: 55  CRFSQSDITPQFELDKAKDNRKPQKRANGIFWIILINLGIYLADHFFQVRGIKSLYLYHN 114

Query: 62  RPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWL 121
            PAWYQF TATFCHANWNHLSSNLFFLYIFGKLVEEEEGNF LWLSY+ TGVGAN+VSWL
Sbjct: 115 FPAWYQFVTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYLFTGVGANLVSWL 174

Query: 122 ILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG 181
           +LPRNAVSVGASGAVFGLF ISVLVKMSWDWRKILEVLILGQFVIE+VMEAAQAS  LSG
Sbjct: 175 VLPRNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVIERVMEAAQASAGLSG 234

Query: 182 SFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQD 224
           +  GG +LQ VNH+AHLSGALVGVVLVWLLS+ PS    DQD
Sbjct: 235 TIYGGYSLQTVNHIAHLSGALVGVVLVWLLSKFPSASM-DQD 275

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BLAST of Carg25621 vs. TAIR10
Match: AT5G25640.1 (Rhomboid-related intramembrane serine protease family protein)

HSP 1 Score: 116.3 bits (290), Expect = 2.5e-26
Identity = 57/85 (67.06%), Postives = 70/85 (82.35%), Query Frame = 0


Query: 88  LYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVGASGAVFGLFTISVLVK 147
           L++ GK+VEEE+GNF LWLSY+ TGVGAN+VSW  LP N+   GASGAVFGLF ISVLVK
Sbjct: 5   LWLTGKIVEEEKGNFGLWLSYLFTGVGANMVSWFTLPPNSFFSGASGAVFGLFVISVLVK 64

Query: 148 MSWDWRKILEVLILGQFVIEKVMEA 173
           MS  W K LEVLILGQFV+++ +++
Sbjct: 65  MSRGWSKFLEVLILGQFVMKRFIDS 89

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BLAST of Carg25621 vs. TAIR10
Match: AT1G12750.1 (RHOMBOID-like protein 6)

HSP 1 Score: 53.1 bits (126), Expect = 2.6e-07
Identity = 48/153 (31.37%), Postives = 80/153 (52.29%), Query Frame = 0


Query: 66  YQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPR 125
           ++  TA + HA   HL  N+F + IFG  +E++ G   + L Y+++G G +I+S L L +
Sbjct: 98  WRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGFIRIGLIYLISGFGGSILSALFL-Q 157

Query: 126 NAVSVGASGAVFGLFTISVLVKMSWDW---RKILEVLILGQFVIEKVMEAAQASTALSGS 185
            ++SVGASGA+ GL   ++L ++  +W   +  L  L+   F+I     A   +  L   
Sbjct: 158 KSISVGASGALLGLMG-AMLSELLTNWTIYKSKLCALLSFLFII-----AINLAIGL--- 217

Query: 186 FRGGSALQNVNHVAHLSGALVGVVLVWLLSRIP 216
                 L  V++ AH+ G L G  L ++L   P
Sbjct: 218 ------LPWVDNFAHIGGLLTGFCLGFILLMQP 234

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BLAST of Carg25621 vs. TAIR10
Match: AT2G29050.1 (RHOMBOID-like 1)

HSP 1 Score: 50.8 bits (120), Expect = 1.3e-06
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 60  HNRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVS 119
           H    W + FT  + HA   H+ +N+  L   G  +E+E G   + L Y+++G G +++S
Sbjct: 125 HKHEVW-RLFTCIWLHAGVFHVLANMLSLIFIGIRLEQEFGFVRIGLLYMISGFGGSLLS 184

Query: 120 WLILPRNAVSVGASGAVFGLFTISVLVKMSWDW 153
            L   R  +SVGASGA+FGL   ++L ++  +W
Sbjct: 185 SL-FNRAGISVGASGALFGLLG-AMLSELLTNW 214

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BLAST of Carg25621 vs. TAIR10
Match: AT3G53780.2 (RHOMBOID-like protein 4)

HSP 1 Score: 49.3 bits (116), Expect = 3.7e-06
Identity = 43/150 (28.67%), Postives = 72/150 (48.00%), Query Frame = 0


Query: 66  YQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPR 125
           ++  +  + H    HL  N+  L   G  +E E G   + L Y+++G G +I+S L L R
Sbjct: 140 WRLLSCNWLHGGVVHLLMNMLTLLFIGIRMEREFGFIRIGLLYLISGFGGSILSALFL-R 199

Query: 126 NAVSVGASGAVFGLFTISVLVKMSWDW----RKILEVLILGQFVIEKVMEAAQASTALSG 185
           + +SVGASGAVFGL    +L ++  +W     K++ ++ L   V   +            
Sbjct: 200 SNISVGASGAVFGLLG-GMLSEIFINWTIYSNKVVTIVTLVLIVAVNL------------ 259

Query: 186 SFRGGSALQNVNHVAHLSGALVGVVLVWLL 212
              G   L  V++ AH+ G   G +L ++L
Sbjct: 260 ---GLGVLPGVDNFAHIGGFATGFLLGFVL 272

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BLAST of Carg25621 vs. Swiss-Prot
Match: sp|Q84MB5|RBL11_ARATH (Rhomboid-like protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBL11 PE=1 SV=1)

HSP 1 Score: 360.9 bits (925), Expect = 1.0e-98
Identity = 175/222 (78.83%), Postives = 193/222 (86.94%), Query Frame = 0


Query: 2   CKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYHN 61
           C+ + +D+  Q EL K   NRKP+KR NGIFWIIL+N+G+Y+ADH FQVR I +LYLYHN
Sbjct: 55  CRFSQSDITPQFELDKAKDNRKPQKRANGIFWIILINLGIYLADHFFQVRGIKSLYLYHN 114

Query: 62  RPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWL 121
            PAWYQF TATFCHANWNHLSSNLFFLYIFGKLVEEEEGNF LWLSY+ TGVGAN+VSWL
Sbjct: 115 FPAWYQFVTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFGLWLSYLFTGVGANLVSWL 174

Query: 122 ILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG 181
           +LPRNAVSVGASGAVFGLF ISVLVKMSWDWRKILEVLILGQFVIE+VMEAAQAS  LSG
Sbjct: 175 VLPRNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVIERVMEAAQASAGLSG 234

Query: 182 SFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQD 224
           +  GG +LQ VNH+AHLSGALVGVVLVWLLS+ PS    DQD
Sbjct: 235 TIYGGYSLQTVNHIAHLSGALVGVVLVWLLSKFPSASM-DQD 275

[Close]

BLAST of Carg25621 vs. Swiss-Prot
Match: sp|Q8VZ48|RBL6_ARATH (RHOMBOID-like protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBL6 PE=2 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 4.7e-06
Identity = 48/153 (31.37%), Postives = 80/153 (52.29%), Query Frame = 0


Query: 66  YQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPR 125
           ++  TA + HA   HL  N+F + IFG  +E++ G   + L Y+++G G +I+S L L +
Sbjct: 98  WRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGFIRIGLIYLISGFGGSILSALFL-Q 157

Query: 126 NAVSVGASGAVFGLFTISVLVKMSWDW---RKILEVLILGQFVIEKVMEAAQASTALSGS 185
            ++SVGASGA+ GL   ++L ++  +W   +  L  L+   F+I     A   +  L   
Sbjct: 158 KSISVGASGALLGLMG-AMLSELLTNWTIYKSKLCALLSFLFII-----AINLAIGL--- 217

Query: 186 FRGGSALQNVNHVAHLSGALVGVVLVWLLSRIP 216
                 L  V++ AH+ G L G  L ++L   P
Sbjct: 218 ------LPWVDNFAHIGGLLTGFCLGFILLMQP 234

[Close]

BLAST of Carg25621 vs. Swiss-Prot
Match: sp|P96617|YDCA_BACSU (Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) OX=224308 GN=ydcA PE=3 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.8e-05
Identity = 40/146 (27.40%), Postives = 68/146 (46.58%), Query Frame = 0


Query: 65  WYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILP 124
           W++  T    HA + HL  N   +++F   +E   G     L Y  +G+  NI +++  P
Sbjct: 58  WWRLITPILLHAGFTHLLFNSMSIFLFAPALERMLGKARFLLVYAGSGIIGNIGTYVTEP 117

Query: 125 RNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSGSFR 184
            + V VGASGA+FGLF + + +           VL   + + ++   +    T L+ +  
Sbjct: 118 LDYVHVGASGAIFGLFGVYLFM-----------VLFRNELIGQE--HSKMIITLLAFAVL 177

Query: 185 GGSALQNVNHVAHLSGALVGVVLVWL 211
                 N+N +AHL G   G +L +L
Sbjct: 178 MSFINSNINMMAHLFGLCGGFLLSFL 190

[Close]

BLAST of Carg25621 vs. Swiss-Prot
Match: sp|Q0WQX7|RBL1_ARATH (RHOMBOID-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBL1 PE=2 SV=1)

HSP 1 Score: 50.8 bits (120), Expect = 2.3e-05
Identity = 32/93 (34.41%), Postives = 53/93 (56.99%), Query Frame = 0


Query: 60  HNRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVS 119
           H    W + FT  + HA   H+ +N+  L   G  +E+E G   + L Y+++G G +++S
Sbjct: 125 HKHEVW-RLFTCIWLHAGVFHVLANMLSLIFIGIRLEQEFGFVRIGLLYMISGFGGSLLS 184

Query: 120 WLILPRNAVSVGASGAVFGLFTISVLVKMSWDW 153
            L   R  +SVGASGA+FGL   ++L ++  +W
Sbjct: 185 SL-FNRAGISVGASGALFGLLG-AMLSELLTNW 214

[Close]

BLAST of Carg25621 vs. Swiss-Prot
Match: sp|F4JBM4|RBL4_ARATH (RHOMBOID-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=RBL4 PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 6.7e-05
Identity = 43/150 (28.67%), Postives = 72/150 (48.00%), Query Frame = 0


Query: 66  YQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPR 125
           ++  +  + H    HL  N+  L   G  +E E G   + L Y+++G G +I+S L L R
Sbjct: 140 WRLLSCNWLHGGVVHLLMNMLTLLFIGIRMEREFGFIRIGLLYLISGFGGSILSALFL-R 199

Query: 126 NAVSVGASGAVFGLFTISVLVKMSWDW----RKILEVLILGQFVIEKVMEAAQASTALSG 185
           + +SVGASGAVFGL    +L ++  +W     K++ ++ L   V   +            
Sbjct: 200 SNISVGASGAVFGLLG-GMLSEIFINWTIYSNKVVTIVTLVLIVAVNL------------ 259

Query: 186 SFRGGSALQNVNHVAHLSGALVGVVLVWLL 212
              G   L  V++ AH+ G   G +L ++L
Sbjct: 260 ---GLGVLPGVDNFAHIGGFATGFLLGFVL 272

[Close]

BLAST of Carg25621 vs. TrEMBL
Match: tr|A0A1S3CQS6|A0A1S3CQS6_CUCME (rhomboid-like protein 11, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LOC103503716 PE=4 SV=1)

HSP 1 Score: 431.0 bits (1107), Expect = 1.7e-117
Identity = 217/231 (93.94%), Postives = 221/231 (95.67%), Query Frame = 0


Query: 2   CKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYHN 61
           CKMNDADLISQLELGKPLQNRK EKRVNGIFWIILLNIG+YVADHIFQVR+IG LYLYHN
Sbjct: 74  CKMNDADLISQLELGKPLQNRKTEKRVNGIFWIILLNIGIYVADHIFQVRNIGALYLYHN 133

Query: 62  RPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWL 121
           RPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGAN+VSWL
Sbjct: 134 RPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANVVSWL 193

Query: 122 ILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG 181
           ILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG
Sbjct: 194 ILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG 253

Query: 182 SFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQDASTLHRKVR 233
           SFRGG   QNVNHVAHLSGALVGV+LVWLLSRIPSQ   DQDAS LHRK R
Sbjct: 254 SFRGGHPSQNVNHVAHLSGALVGVLLVWLLSRIPSQSL-DQDASALHRKGR 303

[Close]

BLAST of Carg25621 vs. TrEMBL
Match: tr|A0A0A0LEK4|A0A0A0LEK4_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889110 PE=4 SV=1)

HSP 1 Score: 426.8 bits (1096), Expect = 3.1e-116
Identity = 216/231 (93.51%), Postives = 222/231 (96.10%), Query Frame = 0


Query: 2   CKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYHN 61
           CKMNDADLISQLELGKPLQNRK EKRVNGIFWIILLNIG+YVADH+FQVR+IG LYLYH+
Sbjct: 74  CKMNDADLISQLELGKPLQNRKTEKRVNGIFWIILLNIGIYVADHVFQVRNIGALYLYHS 133

Query: 62  RPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWL 121
           RPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWL
Sbjct: 134 RPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWL 193

Query: 122 ILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG 181
           ILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG
Sbjct: 194 ILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG 253

Query: 182 SFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQDASTLHRKVR 233
           SFRG S LQNVNHVAHLSGALVGV+LVWLLSR+PSQ   DQDAS LHRK R
Sbjct: 254 SFRGYS-LQNVNHVAHLSGALVGVLLVWLLSRVPSQ-SSDQDASALHRKGR 302

[Close]

BLAST of Carg25621 vs. TrEMBL
Match: tr|A0A1S3CQT1|A0A1S3CQT1_CUCME (rhomboid-like protein 11, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LOC103503716 PE=4 SV=1)

HSP 1 Score: 410.2 bits (1053), Expect = 3.0e-111
Identity = 207/221 (93.67%), Postives = 211/221 (95.48%), Query Frame = 0


Query: 12  QLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYHNRPAWYQFFTA 71
           QLELGKPLQNRK EKRVNGIFWIILLNIG+YVADHIFQVR+IG LYLYHNRPAWYQFFTA
Sbjct: 2   QLELGKPLQNRKTEKRVNGIFWIILLNIGIYVADHIFQVRNIGALYLYHNRPAWYQFFTA 61

Query: 72  TFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAVSVG 131
           TFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGAN+VSWLILPRNAVSVG
Sbjct: 62  TFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANVVSWLILPRNAVSVG 121

Query: 132 ASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSGSFRGGSALQN 191
           ASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSGSFRGG   QN
Sbjct: 122 ASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSGSFRGGHPSQN 181

Query: 192 VNHVAHLSGALVGVVLVWLLSRIPSQPPGDQDASTLHRKVR 233
           VNHVAHLSGALVGV+LVWLLSRIPSQ   DQDAS LHRK R
Sbjct: 182 VNHVAHLSGALVGVLLVWLLSRIPSQSL-DQDASALHRKGR 221

[Close]

BLAST of Carg25621 vs. TrEMBL
Match: tr|A0A2I4GNU7|A0A2I4GNU7_9ROSI (rhomboid-like protein 11, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=LOC109009521 PE=4 SV=1)

HSP 1 Score: 402.1 bits (1032), Expect = 8.3e-109
Identity = 196/230 (85.22%), Postives = 216/230 (93.91%), Query Frame = 0


Query: 1   MCKMNDADLISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYH 60
           +CKMN +D+ISQLELGKP + RKPE+RVNGIFWIILLNIG+YVADH FQVRSI +LYLYH
Sbjct: 66  VCKMNGSDMISQLELGKPEERRKPERRVNGIFWIILLNIGIYVADHFFQVRSIKSLYLYH 125

Query: 61  NRPAWYQFFTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSW 120
           N PAWYQF TATFCHANWNHLSSNLFFLYIFGKLVEEEEG+FALWLSYILTG+GAN+VSW
Sbjct: 126 NWPAWYQFLTATFCHANWNHLSSNLFFLYIFGKLVEEEEGSFALWLSYILTGIGANLVSW 185

Query: 121 LILPRNAVSVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALS 180
           LILPRNAVSVGASGAVFGLF ISVLVKMSWDWRKILEVLILGQFVIE+VMEAAQASTA+S
Sbjct: 186 LILPRNAVSVGASGAVFGLFAISVLVKMSWDWRKILEVLILGQFVIERVMEAAQASTAIS 245

Query: 181 GSFRGGSALQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQDASTLHRK 231
           G+FRGG+++Q VNH+AHLSGALVGVVLVWLLSR+PSQ P + + STL RK
Sbjct: 246 GTFRGGNSMQGVNHIAHLSGALVGVVLVWLLSRVPSQHP-EGEVSTLERK 294

[Close]

BLAST of Carg25621 vs. TrEMBL
Match: tr|A0A2P4JP70|A0A2P4JP70_QUESU (Rhomboid-like protein 11, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_61446 PE=4 SV=1)

HSP 1 Score: 396.7 bits (1018), Expect = 3.5e-107
Identity = 194/224 (86.61%), Postives = 211/224 (94.20%), Query Frame = 0


Query: 9   LISQLELGKPLQNRKPEKRVNGIFWIILLNIGVYVADHIFQVRSIGNLYLYHNRPAWYQF 68
           +ISQLELGKP + RKPEKRVNGIFWIILLNIG+YVADH+FQVR I +LYLYHN PAWYQF
Sbjct: 1   MISQLELGKPEERRKPEKRVNGIFWIILLNIGIYVADHLFQVRGIRSLYLYHNWPAWYQF 60

Query: 69  FTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANIVSWLILPRNAV 128
            TATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGAN+VSWLILPRN V
Sbjct: 61  VTATFCHANWNHLSSNLFFLYIFGKLVEEEEGNFALWLSYILTGVGANLVSWLILPRNTV 120

Query: 129 SVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSGSFRGGSA 188
           SVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSG+FRGG++
Sbjct: 121 SVGASGAVFGLFTISVLVKMSWDWRKILEVLILGQFVIEKVMEAAQASTALSGTFRGGNS 180

Query: 189 LQNVNHVAHLSGALVGVVLVWLLSRIPSQPPGDQDASTLHRKVR 233
           LQ+VNH+AHLSGALVGVVLVWLLSR+PSQPP  + +++  +K R
Sbjct: 181 LQSVNHIAHLSGALVGVVLVWLLSRVPSQPPNGEVSNSHSKKDR 224

The following BLAST results are available for this feature:

BLAST of Carg25621 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022940340.1	1.0e-126	99.14	rhomboid-like protein 11, chloroplastic [Cucurbita moschata]	[more]
XP_022981184.1	5.1e-126	99.57	rhomboid-like protein 11, chloroplastic [Cucurbita maxima]	[more]
XP_023524317.1	4.3e-125	99.14	rhomboid-like protein 11, chloroplastic [Cucurbita pepo subsp. pepo]	[more]
XP_022142618.1	8.7e-118	93.53	rhomboid-like protein 11, chloroplastic [Momordica charantia]	[more]
XP_008466245.1	2.5e-117	93.94	PREDICTED: rhomboid-like protein 11, chloroplastic isoform X1 [Cucumis melo]	[more]

BLAST of Carg25621 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G25752.1	5.8e-100	78.83	rhomboid-like protein 11	[more]
AT5G25640.1	2.5e-26	67.06	Rhomboid-related intramembrane serine protease family protein	[more]
AT1G12750.1	2.6e-07	31.37	RHOMBOID-like protein 6	[more]
AT2G29050.1	1.3e-06	34.41	RHOMBOID-like 1	[more]
AT3G53780.2	3.7e-06	28.67	RHOMBOID-like protein 4	[more]

BLAST of Carg25621 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q84MB5\|RBL11_ARATH	1.0e-98	78.83	Rhomboid-like protein 11, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RBL11...	[more]
sp\|Q8VZ48\|RBL6_ARATH	4.7e-06	31.37	RHOMBOID-like protein 6, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=RBL6 P...	[more]
sp\|P96617\|YDCA_BACSU	1.8e-05	27.40	Putative rhomboid protease YdcA OS=Bacillus subtilis (strain 168) OX=224308 GN=y...	[more]
sp\|Q0WQX7\|RBL1_ARATH	2.3e-05	34.41	RHOMBOID-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=RBL1 PE=2 SV=1	[more]
sp\|F4JBM4\|RBL4_ARATH	6.7e-05	28.67	RHOMBOID-like protein 4 OS=Arabidopsis thaliana OX=3702 GN=RBL4 PE=2 SV=1	[more]

BLAST of Carg25621 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CQS6\|A0A1S3CQS6_CUCME	1.7e-117	93.94	rhomboid-like protein 11, chloroplastic isoform X1 OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A0A0LEK4\|A0A0A0LEK4_CUCSA	3.1e-116	93.51	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G889110 PE=4 SV=1	[more]
tr\|A0A1S3CQT1\|A0A1S3CQT1_CUCME	3.0e-111	93.67	rhomboid-like protein 11, chloroplastic isoform X2 OS=Cucumis melo OX=3656 GN=LO...	[more]
tr\|A0A2I4GNU7\|A0A2I4GNU7_9ROSI	8.3e-109	85.22	rhomboid-like protein 11, chloroplastic isoform X1 OS=Juglans regia OX=51240 GN=...	[more]
tr\|A0A2P4JP70\|A0A2P4JP70_QUESU	3.5e-107	86.61	Rhomboid-like protein 11, chloroplastic OS=Quercus suber OX=58331 GN=CFP56_61446...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004252	serine-type endopeptidase activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **INTERPRO**
Term	Definition
IPR035952	Rhomboid-like_sf
IPR022764	Peptidase_S54_rhomboid_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25621-RA	Carg25621-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022764	Peptidase S54, rhomboid domain	PFAM	PF01694	Rhomboid	coord: 62..214 e-value: 1.3E-29 score: 103.0
IPR035952	Rhomboid-like superfamily	GENE3D	G3DSA:1.20.1540.10		coord: 23..218 e-value: 4.6E-27 score: 96.7
None	No IPR available	PANTHER	PTHR43066	FAMILY NOT NAMED	coord: 23..217
None	No IPR available	SUPERFAMILY	SSF144091	Rhomboid-like	coord: 29..216

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25621	Cla023002	Watermelon (97103) v1	carwmB1009
Carg25621	Csa3G889110	Cucumber (Chinese Long) v2	carcuB1023
Carg25621	MELO3C003582	Melon (DHL92) v3.5.1	carmeB0982
Carg25621	ClCG11G014010	Watermelon (Charleston Gray)	carwcgB0983
Carg25621	CSPI03G44980	Wild cucumber (PI 183967)	carcpiB1047
Carg25621	Cucsa.311380	Cucumber (Gy14) v1	carcgyB1126
Carg25621	CmaCh01G015960	Cucurbita maxima (Rimu)	carcmaB1401
Carg25621	CmoCh01G016440	Cucurbita moschata (Rifu)	carcmoB1357
Carg25621	Lsi04G022230	Bottle gourd (USVL1VR-Ls)	carlsiB922
Carg25621	Cp4.1LG02g05020	Cucurbita pepo (Zucchini)	carcpeB1405
Carg25621	CsGy3G042470	Cucumber (Gy14) v2	carcgybB0995
Carg25621	MELO3C003582.2	Melon (DHL92) v3.6.1	carmedB0992
Carg25621	CsaV3_3G047410	Cucumber (Chinese Long) v3	carcucB1053
Carg25621	Cla97C11G219990	Watermelon (97103) v2	carwmbB1066
Carg25621	Bhi09G002049	Wax gourd	carwgoB1186

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:

None