Cla022212 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla022212
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ethylene-responsive transcription factor 4 (AHRD V1 -* ERF78_ARATH); contains Interpro domain(s) IPR001471 Pathogenesis-related transcriptional factor and ERF, DNA-binding
Location	Chr8 : 21601844 .. 21602494 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTCCTTCAGAAACAGAGTCCTCTACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCCAAACGAATCAACAACAATTCCAATTCAAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCTCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATTAAAGGAAATTCTGCTATCCTTAACTTTCCCGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCCGCCGCTGCTAAAGCCGCTCATATGCATAACCTTTCTTCCAATACTAATCTTAATAATATTAATACTAATTCTTCCTCTGCTTTTTCCGATGAACTTACTGAGATCGTCGAGTTACCCAGCCTTGGAACGAGTTATGACGGCGGCGGTGGTGAGTTTGTGTTTGTTGACTCGGAATTGGAATCGGCTGCGTGGCTTTACGCGCCGCCGTGGCTGCAGAGCTTGGAGGAGGAGTATGATGATGACAATGGGGACTGTGGTACGTTGGGAATGGGATTTCTTTCTAATGGGTTCAAAGGGTTTTTGTGGGATTATTGA

mRNA sequence

ATGAGTCCTTCAGAAACAGAGTCCTCTACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCCAAACGAATCAACAACAATTCCAATTCAAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCTCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATTAAAGGAAATTCTGCTATCCTTAACTTTCCCGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCCGCCGCTGCTAAAGCCGCTCATATGCATAACCTTTCTTCCAATACTAATCTTAATAATATTAATACTAATTCTTCCTCTGCTTTTTCCGATGAACTTACTGAGATCGTCGAGTTACCCAGCCTTGGAACGAGTTATGACGGCGGCGGTGGTGAGTTTGTGTTTGTTGACTCGGAATTGGAATCGGCTGCGTGGCTTTACGCGCCGCCGTGGCTGCAGAGCTTGGAGGAGGAGTATGATGATGACAATGGGGACTGTGGTACGTTGGGAATGGGATTTCTTTCTAATGGGTTCAAAGGGTTTTTGTGGGATTATTGA

Coding sequence (CDS)

ATGAGTCCTTCAGAAACAGAGTCCTCTACTACTTCTTCATCTTCTTCCTCAGATTCAAACAAAAAACCCAAACGAATCAACAACAATTCCAATTCAAAACACCCAGTTTACAGAGGCGTTCGAATGAGAAATTGGGGAAAATGGGTATCTGAAATTCGAGAGCCAAGGAAGAAATCTCGCATTTGGTTAGGAACTTTCCCCAGCCCTGAAATGGCTGCTCGAGCTCATGATGTTGCTGCTCTAAGCATTAAAGGAAATTCTGCTATCCTTAACTTTCCCGAACTTGTTCATCTTCTTCCTCGCCCTGTTTCTCTTGCTCCTCGTGATGTTCAAGCCGCCGCTGCTAAAGCCGCTCATATGCATAACCTTTCTTCCAATACTAATCTTAATAATATTAATACTAATTCTTCCTCTGCTTTTTCCGATGAACTTACTGAGATCGTCGAGTTACCCAGCCTTGGAACGAGTTATGACGGCGGCGGTGGTGAGTTTGTGTTTGTTGACTCGGAATTGGAATCGGCTGCGTGGCTTTACGCGCCGCCGTGGCTGCAGAGCTTGGAGGAGGAGTATGATGATGACAATGGGGACTGTGGTACGTTGGGAATGGGATTTCTTTCTAATGGGTTCAAAGGGTTTTTGTGGGATTATTGA

Protein sequence

MSPSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMHNLSSNTNLNNINTNSSSAFSDELTEIVELPSLGTSYDGGGGEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGFLWDY

Homology

[Close]

BLAST of Cla022212 vs. Swiss-Prot
Match: DREB3_ARATH (Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB3 PE=2 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 2.9e-55
Identity = 127/232 (54.74%), Postives = 143/232 (61.64%), Query Frame = 1


Query: 3   PSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIW 62
           P+    S +  S +  S KK KR     + KHPVYRGVRMRNWGKWVSEIREPRKKSRIW
Sbjct: 19  PNSESDSVSDKSKAEQSEKKTKR--GRDSGKHPVYRGVRMRNWGKWVSEIREPRKKSRIW 78

Query: 63  LGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMH- 122
           LGTFP+PEMAARAHDVAALSIKG +AILNFPEL    PRPVSL+PRD+Q AA KAAHM  
Sbjct: 79  LGTFPTPEMAARAHDVAALSIKGTAAILNFPELADSFPRPVSLSPRDIQTAALKAAHMEP 138

Query: 123 --NLSSNTNLNNINTNSSS------------AFSDELTEIVELPSLGTSYD----GGGGE 182
             + SS+T+ ++  +++SS              S+EL EIVELPSLG SYD      G E
Sbjct: 139 TTSFSSSTSSSSSLSSTSSLESLVLVMDLSRTESEELGEIVELPSLGASYDVDSANLGNE 198

Query: 183 FVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGFLWD 216
           FVF DS       LY PPW QS E+ Y          G G   N   G  WD
Sbjct: 199 FVFYDS---VDYCLYPPPWGQSSEDNY----------GHGISPNFGHGLSWD 235

[Close]

BLAST of Cla022212 vs. Swiss-Prot
Match: TINY_ARATH (Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE=2 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 1.5e-51
Identity = 118/215 (54.88%), Postives = 143/215 (66.51%), Query Frame = 1


Query: 1   MSPSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSR 60
           M  SE+  S  +S+   ++ ++ K+   +S  KHPVYRGVR RNWGKWVSEIREPRKKSR
Sbjct: 1   MIASESTKSWEASAVRQENEEEKKKPVKDSG-KHPVYRGVRKRNWGKWVSEIREPRKKSR 60

Query: 61  IWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHM 120
           IWLGTFPSPEMAARAHDVAALSIKG SAILNFP+L    PRP SL+PRD+Q AA KAAHM
Sbjct: 61  IWLGTFPSPEMAARAHDVAALSIKGASAILNFPDLAGSFPRPSSLSPRDIQVAALKAAHM 120

Query: 121 ---HNLSSNTNLNNINTNSSSAF----------SDELTEIVELPSLGTSYDG---GGGEF 180
               + SS+++L   ++ SSS+           S+EL EIVELPSLG+SYDG    G EF
Sbjct: 121 ETSQSFSSSSSLTFSSSQSSSSLESLVSSSATGSEELGEIVELPSLGSSYDGLTQLGNEF 180

Query: 181 VFVDSELESAAWLYAPPWLQ--------SLEEEYD 192
           +F DS   +  W Y P W +        SL +++D
Sbjct: 181 IFSDS---ADLWPYPPQWSEGDYQMIPASLSQDWD 211

[Close]

BLAST of Cla022212 vs. Swiss-Prot
Match: ERF43_ARATH (Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF043 PE=2 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 5.0e-47
Identity = 118/230 (51.30%), Postives = 138/230 (60.00%), Query Frame = 1


Query: 13  SSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMA 72
           + SSSD  KK        N+K PVYRGVRMR+WGKWVSEIREPRKKSRIWLGTFP+ EMA
Sbjct: 2   ADSSSDKEKK-------ENNKQPVYRGVRMRSWGKWVSEIREPRKKSRIWLGTFPTAEMA 61

Query: 73  ARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHM------------ 132
            RAHDVAA+SIKG SAILNFPEL  LLPRPVSL+PRDV+AAA KAA M            
Sbjct: 62  MRAHDVAAMSIKGTSAILNFPELSKLLPRPVSLSPRDVRAAATKAALMDFDTTAFRSDTE 121

Query: 133 -------HNLSSNTNLNNINTNSSSAF-----------SDELTEIVELPSLGTSYDGGGG 192
                  + +S ++  N   + SSS++           SD+L EIV+LPSLGTS +    
Sbjct: 122 TSETTTSNKMSESSESNETVSFSSSSWSSVTSIEESTVSDDLDEIVKLPSLGTSLN-ESN 181

Query: 193 EFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGF 213
           EFV  DS LE    +Y P WL   EEE    N +  +L    +   +K F
Sbjct: 182 EFVIFDS-LEDL--VYMPRWLSGTEEEVFTYNNNDSSLNYSSVFESWKHF 220

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BLAST of Cla022212 vs. Swiss-Prot
Match: ERF37_ARATH (Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF037 PE=2 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.7e-42
Identity = 108/215 (50.23%), Postives = 131/215 (60.93%), Query Frame = 1


Query: 6   TESSTTSSSSSS-----DSNKKPKRINNNSNSKH-----PVYRGVRMRNWGKWVSEIREP 65
           TESS  S   SS     + +   ++ ++ +N+K      P YRGVRMR WGKWVSEIREP
Sbjct: 2   TESSIISVKQSSPVPEEEDHHHHQQDSHRTNTKKRVRSDPGYRGVRMRTWGKWVSEIREP 61

Query: 66  RKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAA 125
           RKKSRIWLGTF +PEMAARAHD AAL+IKG SA+LNFPEL   LPRP S +PRDVQAAAA
Sbjct: 62  RKKSRIWLGTFSTPEMAARAHDAAALTIKGTSAVLNFPELATYLPRPASSSPRDVQAAAA 121

Query: 126 KAAHMHNLSSNTNL------------------NNINTNSSSAFS----------DELTEI 183
            AA M    S+++L                  ++ +T +SS+ S          +EL+EI
Sbjct: 122 VAAAMDFSPSSSSLVVSDPTTVIAPAETQLSSSSYSTCTSSSLSPSSEEAASTAEELSEI 181

[Close]

BLAST of Cla022212 vs. Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 162.2 bits (409), Expect = 6.5e-39
Identity = 111/235 (47.23%), Postives = 132/235 (56.17%), Query Frame = 1


Query: 14  SSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAA 73
           S  SD+    K+    +  K  VYRG RMR+WGKWVSEIREPRKKSRIWLGTFP+ EMAA
Sbjct: 4   SHGSDTECSSKKKKEKTKEKG-VYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAA 63

Query: 74  RAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHM-------HNLSSN 133
           RAHDVAALSIKG+SAILNFPEL   LPRPVSL+ +D+QAAAA+AA M       H    +
Sbjct: 64  RAHDVAALSIKGSSAILNFPELADFLPRPVSLSQQDIQAAAAEAALMDFKTVPFHLQDDS 123

Query: 134 TNL-----------------------NNINTNSSSAFSDELTEIVELPSL--GTSYDGGG 193
           T L                       ++ +++SSS  S EL +IVELPSL     YD   
Sbjct: 124 TPLQTRCDTEKIEKWSSSSSSASSSSSSSSSSSSSMLSGELGDIVELPSLENNVKYD--- 183

Query: 194 GEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGFLSNGFKGFLWDY 217
                 DS LE    +  PPWL + E ++    GD   L    L    + FLW+Y
Sbjct: 184 --CALYDS-LEGLVSM--PPWLDATENDF--RYGDDSVLLDPCLK---ESFLWNY 224

[Close]

BLAST of Cla022212 vs. TrEMBL
Match: Q75UJ6_CUCME (DREB-like protein OS=Cucumis melo GN=CMe-DREB1 PE=2 SV=1)

HSP 1 Score: 370.9 bits (951), Expect = 1.0e-99
Identity = 194/225 (86.22%), Postives = 205/225 (91.11%), Query Frame = 1


Query: 2   SPS-ETESSTTSSSSSSDSNKKPKRINNNS--NSKHPVYRGVRMRNWGKWVSEIREPRKK 61
           SPS ETESS   SSSSSDSNKKPKRIN+NS  NSKH VYRGVRMRNWGKWVSEIREPRKK
Sbjct: 8   SPSPETESS---SSSSSDSNKKPKRINSNSSSNSKHAVYRGVRMRNWGKWVSEIREPRKK 67

Query: 62  SRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAA 121
           SRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFP+LVHLLPRPVSLAPRDVQAAAAKAA
Sbjct: 68  SRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAA 127

Query: 122 HMHNLSSNTNLNNINT--NSSSAFSDELTEIVELPSLGTSYDGG---GGEFVFVDSELES 181
           HMHNLSSN N NN NT  NSSSAFSDEL+EIVELP+LGTSYDGG   GGEFVFV+SELES
Sbjct: 128 HMHNLSSNANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDGGVGVGGEFVFVESELES 187

Query: 182 AAWLYAPPWLQSLEEEYD--DDNGDCGTLGMGFLSNGFKGFLWDY 217
           AAWLY PPW+QSL+E+YD  D +GDCG LGMGF+SNGFKGFL+DY
Sbjct: 188 AAWLYQPPWVQSLQEDYDDIDGDGDCGKLGMGFVSNGFKGFLFDY 229

[Close]

BLAST of Cla022212 vs. TrEMBL
Match: A0A0A0LPS6_CUCSA (DREB-like protein OS=Cucumis sativus GN=Csa_2G374590 PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 9.7e-98
Identity = 191/224 (85.27%), Postives = 201/224 (89.73%), Query Frame = 1


Query: 4   SETESSTTSSSSSSDSNKKPKRINNNSNS----KHPVYRGVRMRNWGKWVSEIREPRKKS 63
           SETESS   SSSSSDSNKKPKRIN+NSNS    K  VYRGVRMRNWGKWVSEIREPRKKS
Sbjct: 11  SETESS---SSSSSDSNKKPKRINSNSNSNSNSKLAVYRGVRMRNWGKWVSEIREPRKKS 70

Query: 64  RIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAH 123
           RIWLGTFPSPEMAARAHDVAALSIKGNSAILNFP+LVHLLPRPVSLAPRDVQAAAAKAAH
Sbjct: 71  RIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAH 130

Query: 124 MHNLSSNTNLNNINT--NSSSAFSDELTEIVELPSLGTSYDGG---GGEFVFVDSELESA 183
           MHNLSSN N NN NT  NSSSAFSDEL+EIVELP+LGTSYD G   GGEFVFV+SELESA
Sbjct: 131 MHNLSSNANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDEGVGVGGEFVFVESELESA 190

Query: 184 AWLYAPPWLQSLEEEYD--DDNGDCGTLGMGFLSNGFKGFLWDY 217
           AWLY PPW+QSLEE+YD  D +GDCG LGMGF+SNGFKGFL+DY
Sbjct: 191 AWLYPPPWVQSLEEDYDDGDGDGDCGKLGMGFVSNGFKGFLFDY 231

[Close]

BLAST of Cla022212 vs. TrEMBL
Match: A0A061GK29_THECC (Integrase-type DNA-binding superfamily protein OS=Theobroma cacao GN=TCM_037194 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 7.7e-63
Identity = 147/238 (61.76%), Postives = 169/238 (71.01%), Query Frame = 1


Query: 3   PSETESSTTS-----SSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRK 62
           P+   SSTT+      ++SSDSNKK KR+ ++  SKHPVYRGVRMRNWGKWVSEIREPRK
Sbjct: 33  PNSVPSSTTTLNAKPETTSSDSNKKIKRMRDS--SKHPVYRGVRMRNWGKWVSEIREPRK 92

Query: 63  KSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKA 122
           KSRIWLGTFP+PEMAARAHDVAALSIKGNSAILNFPEL + LPRPVSLAPRDVQAAAAKA
Sbjct: 93  KSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELANSLPRPVSLAPRDVQAAAAKA 152

Query: 123 AHMH-------------NLSSNTNLNN-INTNSSSAFSDELTEIVELPSLGTSYDGG--G 182
           A M               LSS+++L++ ++    S+ SDEL++IVELPSL TSYD     
Sbjct: 153 AQMDKFDSPSPFTTSSATLSSSSSLSSLVSQMELSSGSDELSQIVELPSLETSYDSVELK 212

Query: 183 GEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGM--GFLSNGF-KGFLWDY 217
            EFVFVDS      W Y PPWLQS+    DD    C  LG+    L NGF +G LWDY
Sbjct: 213 NEFVFVDS---VDGWFYTPPWLQSV----DDCGYVCDQLGVPESVLQNGFDEGLLWDY 261

[Close]

BLAST of Cla022212 vs. TrEMBL
Match: A0A0D2Q9A2_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G050200 PE=4 SV=1)

HSP 1 Score: 238.0 bits (606), Expect = 1.0e-59
Identity = 137/233 (58.80%), Postives = 164/233 (70.39%), Query Frame = 1


Query: 3   PSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIW 62
           P  T +      ++ D+N+K KR+ ++  SKHPVYRGVRMR+WGKWVSEIREPRKKSRIW
Sbjct: 38  PGSTTTLNGKPETTCDTNRKMKRMRDS--SKHPVYRGVRMRSWGKWVSEIREPRKKSRIW 97

Query: 63  LGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMHN 122
           LGTFP+PEMAARAHDVAALSIKGNSAILNFPEL + LPRPVSLAPRDVQAAAAKAA M N
Sbjct: 98  LGTFPTPEMAARAHDVAALSIKGNSAILNFPELANSLPRPVSLAPRDVQAAAAKAAQMGN 157

Query: 123 L-------SSNTNLNNINTNSS----------SAFSDELTEIVELPSLGTSYDGG--GGE 182
           L       +S+++ + ++++SS          S+ SDELTEIVELPSLGTSY+    G E
Sbjct: 158 LDSPSPSTTSSSSTSTLSSSSSLSSLVSHLDLSSASDELTEIVELPSLGTSYESVELGSE 217

Query: 183 FVFVDSELESAAWLYAPPWLQSLEE-EYDDDNGDCGTLGM--GFLSNGFKGFL 214
           F+F DS      W Y PPWL+S+E+ EY      C  L +    L NGFK  L
Sbjct: 218 FIFADS---MDGWFYPPPWLESMEDCEY-----VCNQLVVPESVLQNGFKQVL 260

[Close]

BLAST of Cla022212 vs. TrEMBL
Match: D5L133_MALDO (AP2 domain class transcription factor OS=Malus domestica GN=AP2D49 PE=2 SV=1)

HSP 1 Score: 236.9 bits (603), Expect = 2.3e-59
Identity = 141/252 (55.95%), Postives = 167/252 (66.27%), Query Frame = 1


Query: 4   SETESSTTSSSSSSD-------SNKKPKR------------INNNS-----NSKHPVYRG 63
           SETES++ SS+S+S         N+ P++              NN+     +SKHPVYRG
Sbjct: 9   SETESNSNSSTSASPPSSPSSLQNQNPQKPSSPIHQETDLPTKNNAKRVRDSSKHPVYRG 68

Query: 64  VRMRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLL 123
           VRMRNWGKWVSEIREPRKKSRIWLGTFP+PEMAARAHDVAALSIKGNSAILNFPEL + L
Sbjct: 69  VRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELSNSL 128

Query: 124 PRPVSLAPRDVQAAAAKAAHMHNLSSNTNLNN--INTNSSSAF-------------SDEL 183
           PRPVSLAPRDVQAAA KAA MH   S  +++   ++++SSS+              SDEL
Sbjct: 129 PRPVSLAPRDVQAAATKAAQMHQFDSIRSMSPSILSSSSSSSLSSLVSAIDNLSTESDEL 188

Query: 184 TEIVELPSLGTSYDGGGGEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGMGF 217
           +EIVELPSL         EFVFV+SE +   W+Y PPWLQ +EE       +CG LG   
Sbjct: 189 SEIVELPSLSYESTELRSEFVFVESEDQ---WVYPPPWLQRVEE------FECGELGAA- 248

[Close]

BLAST of Cla022212 vs. NCBI nr
Match: gi|985482321|ref|NP_001306241.1| (ethylene-responsive transcription factor TINY-like [Cucumis melo])

HSP 1 Score: 370.9 bits (951), Expect = 1.5e-99
Identity = 194/225 (86.22%), Postives = 205/225 (91.11%), Query Frame = 1


Query: 2   SPS-ETESSTTSSSSSSDSNKKPKRINNNS--NSKHPVYRGVRMRNWGKWVSEIREPRKK 61
           SPS ETESS   SSSSSDSNKKPKRIN+NS  NSKH VYRGVRMRNWGKWVSEIREPRKK
Sbjct: 8   SPSPETESS---SSSSSDSNKKPKRINSNSSSNSKHAVYRGVRMRNWGKWVSEIREPRKK 67

Query: 62  SRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAA 121
           SRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFP+LVHLLPRPVSLAPRDVQAAAAKAA
Sbjct: 68  SRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAA 127

Query: 122 HMHNLSSNTNLNNINT--NSSSAFSDELTEIVELPSLGTSYDGG---GGEFVFVDSELES 181
           HMHNLSSN N NN NT  NSSSAFSDEL+EIVELP+LGTSYDGG   GGEFVFV+SELES
Sbjct: 128 HMHNLSSNANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDGGVGVGGEFVFVESELES 187

Query: 182 AAWLYAPPWLQSLEEEYD--DDNGDCGTLGMGFLSNGFKGFLWDY 217
           AAWLY PPW+QSL+E+YD  D +GDCG LGMGF+SNGFKGFL+DY
Sbjct: 188 AAWLYQPPWVQSLQEDYDDIDGDGDCGKLGMGFVSNGFKGFLFDY 229

[Close]

BLAST of Cla022212 vs. NCBI nr
Match: gi|778672054|ref|XP_004150289.2| (PREDICTED: ethylene-responsive transcription factor TINY-like [Cucumis sativus])

HSP 1 Score: 364.4 bits (934), Expect = 1.4e-97
Identity = 191/224 (85.27%), Postives = 201/224 (89.73%), Query Frame = 1


Query: 4   SETESSTTSSSSSSDSNKKPKRINNNSNS----KHPVYRGVRMRNWGKWVSEIREPRKKS 63
           SETESS   SSSSSDSNKKPKRIN+NSNS    K  VYRGVRMRNWGKWVSEIREPRKKS
Sbjct: 11  SETESS---SSSSSDSNKKPKRINSNSNSNSNSKLAVYRGVRMRNWGKWVSEIREPRKKS 70

Query: 64  RIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAH 123
           RIWLGTFPSPEMAARAHDVAALSIKGNSAILNFP+LVHLLPRPVSLAPRDVQAAAAKAAH
Sbjct: 71  RIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPDLVHLLPRPVSLAPRDVQAAAAKAAH 130

Query: 124 MHNLSSNTNLNNINT--NSSSAFSDELTEIVELPSLGTSYDGG---GGEFVFVDSELESA 183
           MHNLSSN N NN NT  NSSSAFSDEL+EIVELP+LGTSYD G   GGEFVFV+SELESA
Sbjct: 131 MHNLSSNANTNNHNTNSNSSSAFSDELSEIVELPALGTSYDEGVGVGGEFVFVESELESA 190

Query: 184 AWLYAPPWLQSLEEEYD--DDNGDCGTLGMGFLSNGFKGFLWDY 217
           AWLY PPW+QSLEE+YD  D +GDCG LGMGF+SNGFKGFL+DY
Sbjct: 191 AWLYPPPWVQSLEEDYDDGDGDGDCGKLGMGFVSNGFKGFLFDY 231

[Close]

BLAST of Cla022212 vs. NCBI nr
Match: gi|470109809|ref|XP_004291182.1| (PREDICTED: dehydration-responsive element-binding protein 3-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 249.6 bits (636), Expect = 5.0e-63
Identity = 147/254 (57.87%), Postives = 171/254 (67.32%), Query Frame = 1


Query: 4   SETESSTTSSSSSS--------DSNKKPKRI-----NNNS---------NSKHPVYRGVR 63
           SET+SS+TSSS  S        + + KP+ +     NNN          +SKHPVYRGVR
Sbjct: 11  SETDSSSTSSSPPSSPASSRPLNPDNKPESLELQPKNNNDKKSKRARVDSSKHPVYRGVR 70

Query: 64  MRNWGKWVSEIREPRKKSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPR 123
           MRNWGKWVSEIREPRKKSRIWLGTFP+PEMAARAHDVAALSIKGNSAILNFPEL+  LPR
Sbjct: 71  MRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELIDSLPR 130

Query: 124 PVSLAPRDVQAAAAKAAHMHNL-SSNTNLNNINTNSS-----------SAFSDELTEIVE 183
           P SLAPRDVQAAA+KAA MH   S+N +L++ +++SS           S  S+EL+EIVE
Sbjct: 131 PASLAPRDVQAAASKAAQMHQFDSTNPSLSSTSSSSSLSSLVSAIDNLSTESEELSEIVE 190

Query: 184 LPSLGTSYDGG--GGEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGT-----LGM 217
           LPSLGTSY+      EFVFVDS  +   W+Y PPWLQ +        GDCG      LG 
Sbjct: 191 LPSLGTSYESYELRSEFVFVDSADDE--WVYPPPWLQQM--------GDCGVYVCGGLGS 250

[Close]

BLAST of Cla022212 vs. NCBI nr
Match: gi|590573465|ref|XP_007012129.1| (Integrase-type DNA-binding superfamily protein [Theobroma cacao])

HSP 1 Score: 248.4 bits (633), Expect = 1.1e-62
Identity = 147/238 (61.76%), Postives = 169/238 (71.01%), Query Frame = 1


Query: 3   PSETESSTTS-----SSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRK 62
           P+   SSTT+      ++SSDSNKK KR+ ++  SKHPVYRGVRMRNWGKWVSEIREPRK
Sbjct: 33  PNSVPSSTTTLNAKPETTSSDSNKKIKRMRDS--SKHPVYRGVRMRNWGKWVSEIREPRK 92

Query: 63  KSRIWLGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKA 122
           KSRIWLGTFP+PEMAARAHDVAALSIKGNSAILNFPEL + LPRPVSLAPRDVQAAAAKA
Sbjct: 93  KSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPELANSLPRPVSLAPRDVQAAAAKA 152

Query: 123 AHMH-------------NLSSNTNLNN-INTNSSSAFSDELTEIVELPSLGTSYDGG--G 182
           A M               LSS+++L++ ++    S+ SDEL++IVELPSL TSYD     
Sbjct: 153 AQMDKFDSPSPFTTSSATLSSSSSLSSLVSQMELSSGSDELSQIVELPSLETSYDSVELK 212

Query: 183 GEFVFVDSELESAAWLYAPPWLQSLEEEYDDDNGDCGTLGM--GFLSNGF-KGFLWDY 217
            EFVFVDS      W Y PPWLQS+    DD    C  LG+    L NGF +G LWDY
Sbjct: 213 NEFVFVDS---VDGWFYTPPWLQSV----DDCGYVCDQLGVPESVLQNGFDEGLLWDY 261

[Close]

BLAST of Cla022212 vs. NCBI nr
Match: gi|823229144|ref|XP_012447312.1| (PREDICTED: ethylene-responsive transcription factor TINY-like [Gossypium raimondii])

HSP 1 Score: 246.1 bits (627), Expect = 5.5e-62
Identity = 141/237 (59.49%), Postives = 168/237 (70.89%), Query Frame = 1


Query: 3   PSETESSTTSSSSSSDSNKKPKRINNNSNSKHPVYRGVRMRNWGKWVSEIREPRKKSRIW 62
           P  T +      ++ D+N+K KR+ ++  SKHPVYRGVRMR+WGKWVSEIREPRKKSRIW
Sbjct: 38  PGSTTTLNGKPETTCDTNRKMKRMRDS--SKHPVYRGVRMRSWGKWVSEIREPRKKSRIW 97

Query: 63  LGTFPSPEMAARAHDVAALSIKGNSAILNFPELVHLLPRPVSLAPRDVQAAAAKAAHMHN 122
           LGTFP+PEMAARAHDVAALSIKGNSAILNFPEL + LPRPVSLAPRDVQAAAAKAA M N
Sbjct: 98  LGTFPTPEMAARAHDVAALSIKGNSAILNFPELANSLPRPVSLAPRDVQAAAAKAAQMGN 157

Query: 123 L-------SSNTNLNNINTNSS----------SAFSDELTEIVELPSLGTSYDGG--GGE 182
           L       +S+++ + ++++SS          S+ SDELTEIVELPSLGTSY+    G E
Sbjct: 158 LDSPSPSTTSSSSTSTLSSSSSLSSLVSHLDLSSASDELTEIVELPSLGTSYESVELGSE 217

Query: 183 FVFVDSELESAAWLYAPPWLQSLEE-EYDDDNGDCGTLGM--GFLSNGFK-GFLWDY 217
           F+F DS      W Y PPWL+S+E+ EY      C  L +    L NGFK G LWDY
Sbjct: 218 FIFADS---MDGWFYPPPWLESMEDCEY-----VCNQLVVPESVLQNGFKQGLLWDY 264

The following BLAST results are available for this feature:

BLAST of Cla022212 vs. Swiss-Prot


Match Name	E-value	Identity	Description
DREB3_ARATH	2.9e-55	54.74	Dehydration-responsive element-binding protein 3 OS=Arabidopsis thaliana GN=DREB...	[more]
TINY_ARATH	1.5e-51	54.88	Ethylene-responsive transcription factor TINY OS=Arabidopsis thaliana GN=TINY PE...	[more]
ERF43_ARATH	5.0e-47	51.30	Ethylene-responsive transcription factor ERF043 OS=Arabidopsis thaliana GN=ERF04...	[more]
ERF37_ARATH	3.7e-42	50.23	Ethylene-responsive transcription factor ERF037 OS=Arabidopsis thaliana GN=ERF03...	[more]
ERF42_ARATH	6.5e-39	47.23	Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF04...	[more]

BLAST of Cla022212 vs. TrEMBL


Match Name	E-value	Identity	Description
Q75UJ6_CUCME	1.0e-99	86.22	DREB-like protein OS=Cucumis melo GN=CMe-DREB1 PE=2 SV=1	[more]
A0A0A0LPS6_CUCSA	9.7e-98	85.27	DREB-like protein OS=Cucumis sativus GN=Csa_2G374590 PE=4 SV=1	[more]
A0A061GK29_THECC	7.7e-63	61.76	Integrase-type DNA-binding superfamily protein OS=Theobroma cacao GN=TCM_037194 ...	[more]
A0A0D2Q9A2_GOSRA	1.0e-59	58.80	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G050200 PE=4 SV=1	[more]
D5L133_MALDO	2.3e-59	55.95	AP2 domain class transcription factor OS=Malus domestica GN=AP2D49 PE=2 SV=1	[more]

BLAST of Cla022212 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|985482321\|ref\|NP_001306241.1\|	1.5e-99	86.22	ethylene-responsive transcription factor TINY-like [Cucumis melo]	[more]
gi\|778672054\|ref\|XP_004150289.2\|	1.4e-97	85.27	PREDICTED: ethylene-responsive transcription factor TINY-like [Cucumis sativus]	[more]
gi\|470109809\|ref\|XP_004291182.1\|	5.0e-63	57.87	PREDICTED: dehydration-responsive element-binding protein 3-like [Fragaria vesca...	[more]
gi\|590573465\|ref\|XP_007012129.1\|	1.1e-62	61.76	Integrase-type DNA-binding superfamily protein [Theobroma cacao]	[more]
gi\|823229144\|ref\|XP_012447312.1\|	5.5e-62	59.49	PREDICTED: ethylene-responsive transcription factor TINY-like [Gossypium raimond...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001471	AP2/ERF_dom
IPR016177	DNA-bd_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	transcription factor activity, sequence-specific DNA binding
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005634	nucleus
cellular_component	GO:0005667	transcription factor complex
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU78202	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla022212	Cla022212.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU78202	WMU78202	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001471	AP2/ERF domain	PRINTS	PR00367	ETHRSPELEMNT	coord: 59..75 score: 8.0E-10coord: 37..48 score: 8.0
IPR001471	AP2/ERF domain	GENE3D	G3DSA:3.30.730.10		coord: 36..94 score: 2.9
IPR001471	AP2/ERF domain	PFAM	PF00847	AP2	coord: 35..85 score: 9.8
IPR001471	AP2/ERF domain	SMART	SM00380	rav1_2	coord: 36..99 score: 1.0
IPR001471	AP2/ERF domain	PROFILE	PS51032	AP2_ERF	coord: 36..93 score: 23
IPR016177	DNA-binding domain	unknown	SSF54171	DNA-binding domain	coord: 36..94 score: 1.9
None	No IPR available	PANTHER	PTHR31985	FAMILY NOT NAMED	coord: 2..216 score: 6.2
None	No IPR available	PANTHER	PTHR31985:SF23	DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 3-RELATED	coord: 2..216 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla022212	Cla97C08G155430	Watermelon (97103) v2	wmwmbB100
Cla022212	Cla97C11G221160	Watermelon (97103) v2	wmwmbB084
Cla022212	Csa3G895680	Cucumber (Chinese Long) v2	cuwmB209
Cla022212	Csa2G374590	Cucumber (Chinese Long) v2	cuwmB107
Cla022212	MELO3C003463	Melon (DHL92) v3.5.1	mewmB354
Cla022212	MELO3C011143	Melon (DHL92) v3.5.1	mewmB307
Cla022212	ClCG11G015160	Watermelon (Charleston Gray)	wcgwmB088
Cla022212	ClCG08G012250	Watermelon (Charleston Gray)	wcgwmB400
Cla022212	CSPI03G46110	Wild cucumber (PI 183967)	cpiwmB208
Cla022212	CSPI02G22270	Wild cucumber (PI 183967)	cpiwmB112
Cla022212	Cucsa.161310	Cucumber (Gy14) v1	cgywmB289
Cla022212	Cucsa.312570	Cucumber (Gy14) v1	cgywmB565
Cla022212	CmaCh12G002530	Cucurbita maxima (Rimu)	cmawmB148
Cla022212	CmoCh05G006190	Cucurbita moschata (Rifu)	cmowmB746
Cla022212	CmoCh12G002060	Cucurbita moschata (Rifu)	cmowmB134
Cla022212	Lsi08G010860	Bottle gourd (USVL1VR-Ls)	lsiwmB465
Cla022212	Lsi04G023310	Bottle gourd (USVL1VR-Ls)	lsiwmB291
Cla022212	CsGy2G022020	Cucumber (Gy14) v2	cgybwmB105
Cla022212	CsGy3G043610	Cucumber (Gy14) v2	cgybwmB196
Cla022212	MELO3C011143.2	Melon (DHL92) v3.6.1	medwmB300
Cla022212	MELO3C003463.2	Melon (DHL92) v3.6.1	medwmB352
Cla022212	Carg08281	Silver-seed gourd	carwmB0058
Cla022212	Carg03844	Silver-seed gourd	carwmB0978
Cla022212	CsaV3_3G048560	Cucumber (Chinese Long) v3	cucwmB217
Cla022212	CsaV3_2G030880	Cucumber (Chinese Long) v3	cucwmB121
Cla022212	Bhi04G000696	Wax gourd	wgowmB311
Cla022212	Bhi09G002179	Wax gourd	wgowmB600

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla022212	Cla023112	Watermelon (97103) v1	wmwmB076

The following block(s) are covering this gene:


Gene	Organism	Block
Cla022212	Cucurbita pepo (Zucchini)	cpewmB099
Cla022212	Cucurbita pepo (Zucchini)	cpewmB782
Cla022212	Cucurbita maxima (Rimu)	cmawmB751