Cla022008 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla022008
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	6 7-dimethyl-8-ribityllumazine synthase (AHRD V1 **** E7BRS1_CUCSA); contains Interpro domain(s) IPR002180 6,7-dimethyl-8-ribityllumazine synthase
Location	Chr8 : 19497673 .. 19500893 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCGCCTCATTTGCTACTCCCGCTCAGAGCTTGGTTCATCGTCAAAATCTGACGTTCGCATTTTCCAATTCCAACTTCAAGCGCACTCAACTTCAATTTCAGGGCACACTTTCTGCAAAATCACAACCCCTTTCTTTCTCCTCTCAATTGAAGCTTCCTAATGATGCCTCTCCCACCAACGATCACCGTTCCTCTTTTGCGCAAACCGCCGCCGTTCGCCACATCGTCGGCTCTCTTGCCAAAGCTGGTGGCCTTCGCTTTGCTGTGGTCATTTCTCTTTCCTGCTCTTCTTTTTTTCTTCTAATTCTGGAAGTTCTGTTCGTTCTTGAGTTTGGCGTTTTTCTTAAAAATTATGGGGTTTTCCTTATCGTCTACCTAAAAAACTGTAGTCTAGTTGAGAATCATGCTTCTAGATGATGCTGTCTCGTCTGAGAATTTATTCGCTTCTAGGAAGTGTTCTCTTGATTTGTTGCCTGCATTCAATTCAAAGTTTATGTGACAATGAGTAAGTTCTCGGATTCGCTACAAGCAATTCAAAGCATGCCTATGTATTCTTGTGATGTAAAATTGAAGGTACAAGCTTTTTCGGTGCAGCTGTGCGGGCGAATTATTGTTATCATGAGTCTAAACTGAGTTTTTTTTTTATTACCTTGTCATTTCTGACTATGGACTCGTGGGATTTAACCATGACATCTATGTTTTTTCATGCTGGCATATCCCCTTGATGGGTTTGTAATTATTTTTAACATTTGTTTCTTTGATGAAGGTTGTGGGACGGTTCAACGAAATTGTGACAAGGCCAATGCTCGAGGGAGCTTTGTCAACATTCAAAAGTTATTCAGTGCAAGACGAGGATGTTGATGTAAGCGTTTCATGATGCAACATGTAGATAGTCGCATGATTGTTTTTTGCTAGTGCTAGAAACTGAGATTCATTTATTTTAATTAATCAAAACAGAAAATAGGTTTACGACATGGTTATCCGCAGCAAGCTTGTGAATAAATATGTTTTGAAACTAGCAATGTTTTAAAAGGCTATTGAGGCTCACGCCTCGGGGATCACCTTGAGGCAAGACTCTAACTTTTAACCTGGGGATCGGTGCCTCTTTGAATCACAAGAGGCCTACGCCTCTGTGAAAACACACTGAGGATTAAAGTCTCTATGCCTTGTGTAATGATTTGAAGAATAATATTAATTTGCCTCTTTCTTATAAAATTTGAAGGTTCGAGACTTTGAGTTGTGATAATTTGAACATTTCTACTTTTGTATTGATATTCTTAGCAATGTTAAAGATATTCTTTTAGAATTTTTGTTTTTAGTGTCAATTGACCGAAGTGGTTTTTTTTTATACTTTTATATGACTATTATGTTCAGCTATACTTGGTCAAATCAATTTAGGATTTGTAAAATGTTTCTAATTAAATTTGGAGTTGACCCCTTGCTTCTTAGGAATAGTTTAAAGTTGCTTTAGCCTTTTAAAACATTGGAAACTAGATTTTTGTGTACGTCATGAGTATAAGTATGATAACATACACCTTTCATCAGATTTGCATTGAGAGGGAACATCTATCTTACCTCTGCTAGTTGGCATGCAGCTTTAACTTGACTTGACATTTTGACTTTATTATTTACCTCGCTATCATATCAGGTTGTCTGGGTTCCGGGGAGCTTTGATATTCCTGTGGTTGCTGAAAGGCTTGGTCGATCTGGGAAGTACCATGCTGTTTTGTGCATTGGAGCTGTGGTATGATTTCCTGTAACATTTATCAAGTCAATTTTATATTTTCTAGTCTTGAGTGCACTTATTAATATCACGAACCTCTTCATTATGATAGATTAGAGGTGATACATCCCACTATGACGCCGTTGTAAACTCTGCTGCATCTGGAGTACTTTCTGCCGGTTTAAATTCAGGTTGTTTTCTTGTTTTTGTAGTTTAGCAGAACTTTATATTCTTTTACCCTATTAATTTAAGTTTTTCTAACCAATTTTTGTTCTGTATTGCTTATCTTTTATAAGTTCAACCTCAAGGGTTGAGCTTTGAGCATGTTGGCTAAGGCTTTTTGAATCTTATGTCCAAGAATTCTAGGACCATCATATCTCGAGACATTTAAGAACGTATGAGTTTATAAATACTAAATATTGCAGTGAACTTGACTTAGTTATTCCAGTTTTGACATCTATGAACCGTGAGGTATTAAGGAATTTCAGGGTATGAAAAGGACAAGAAGCATCTGGTTGTTATAGATTCATTAGTAGATGCAGATACATATAAATTGTGTCATGGCATGCACATTCCTAGCCTTTTATTTTTAAAAAATGGTTTCTCCGATTAGAGCATTTCAATATAAGGCCTTCGTACTAGTTTGAGTTGGAACAATAATTATTCCATGTTTAAGCTGTTGGGAGCTATAGTGAACTATGTTCTTGTTCTTGAATAACTGATATGGGAATTAGATTTCACCCCTTATATGTTCAAACACGTGTTAAAATTATTGATAGTAATCTCCGTACCATCTTTTATTCTTTTTAGAGAAGCACCATTTATATCAATGTTGCCATCTTAGTTCTACTCTTTCTTCATCTTTTAGTTAACACCATATTATATTTAAGCCATTTTCTTATGCCTATGTAGGAGTTCCATGCGTATTTAGCGTCTTGACTTGTGACAACTTAGAACAGGTAAATCTGATCTAAACTGACTGTCAACAAGCATCCTACCTAGTTATATTTTTCAAAGGAGCTATGTGATTTCTGAACATTATGTACTTTTTGCCACTTTTTTATTTTTGTGAAGGCTTTCGATCGAGCTGGTGGTAAAGCTGGAAATAAGGGTTCTGAGGGTGCTTTGACAGCTGTAAGTTGTAGTTAGCTTATAGAGTTCCAACGGTTGATTGTTCCAAGAAAAAAGACTGATTACTAACATATTTACTATTCAAACGGTTAGCCAAAGCAAAAGTATATGGGGAAAATGTCTAATATGTGAATAAAAAGCACTGAATTTGTTTTCTTTCATGTATATATATAGGTTTAGATTTGAATTTGAATTTTCTTGTCCTATGGAAGTGGTAACGCTTGGAATTATCTTTTTGAACTTTATGATTACTATTATTTGTTTCTATTTGTGAATCTTTTGTTATAAGATTTTGCATCATTTTGGCCAATGTCTTCTCCTACAGATGGAGCTGGCGTCTATGTTCGAGTACGACCTGAAGTAG

mRNA sequence

ATGGCCGCCTCATTTGCTACTCCCGCTCAGAGCTTGGTTCATCGTCAAAATCTGACGTTCGCATTTTCCAATTCCAACTTCAAGCGCACTCAACTTCAATTTCAGGGCACACTTTCTGCAAAATCACAACCCCTTTCTTTCTCCTCTCAATTGAAGCTTCCTAATGATGCCTCTCCCACCAACGATCACCGTTCCTCTTTTGCGCAAACCGCCGCCGTTCGCCACATCGTCGGCTCTCTTGCCAAAGCTGGTGGCCTTCGCTTTGCTGTGGTTGTGGGACGGTTCAACGAAATTGTGACAAGGCCAATGCTCGAGGGAGCTTTGTCAACATTCAAAAGTTATTCAGTGCAAGACGAGGATGTTGATGTTGTCTGGGTTCCGGGGAGCTTTGATATTCCTGTGGTTGCTGAAAGGCTTGGTCGATCTGGGAAGTACCATGCTGTTTTGTGCATTGGAGCTGTGATTAGAGGTGATACATCCCACTATGACGCCGTTGTAAACTCTGCTGCATCTGGAGTACTTTCTGCCGGTTTAAATTCAGGAGTTCCATGCGTATTTAGCGTCTTGACTTGTGACAACTTAGAACAGGCTTTCGATCGAGCTGGTGGTAAAGCTGGAAATAAGGGTTCTGAGGGTGCTTTGACAGCTATGGAGCTGGCGTCTATGTTCGAGTACGACCTGAAGTAG

Coding sequence (CDS)

ATGGCCGCCTCATTTGCTACTCCCGCTCAGAGCTTGGTTCATCGTCAAAATCTGACGTTCGCATTTTCCAATTCCAACTTCAAGCGCACTCAACTTCAATTTCAGGGCACACTTTCTGCAAAATCACAACCCCTTTCTTTCTCCTCTCAATTGAAGCTTCCTAATGATGCCTCTCCCACCAACGATCACCGTTCCTCTTTTGCGCAAACCGCCGCCGTTCGCCACATCGTCGGCTCTCTTGCCAAAGCTGGTGGCCTTCGCTTTGCTGTGGTTGTGGGACGGTTCAACGAAATTGTGACAAGGCCAATGCTCGAGGGAGCTTTGTCAACATTCAAAAGTTATTCAGTGCAAGACGAGGATGTTGATGTTGTCTGGGTTCCGGGGAGCTTTGATATTCCTGTGGTTGCTGAAAGGCTTGGTCGATCTGGGAAGTACCATGCTGTTTTGTGCATTGGAGCTGTGATTAGAGGTGATACATCCCACTATGACGCCGTTGTAAACTCTGCTGCATCTGGAGTACTTTCTGCCGGTTTAAATTCAGGAGTTCCATGCGTATTTAGCGTCTTGACTTGTGACAACTTAGAACAGGCTTTCGATCGAGCTGGTGGTAAAGCTGGAAATAAGGGTTCTGAGGGTGCTTTGACAGCTATGGAGCTGGCGTCTATGTTCGAGTACGACCTGAAGTAG

Protein sequence

MAASFATPAQSLVHRQNLTFAFSNSNFKRTQLQFQGTLSAKSQPLSFSSQLKLPNDASPTNDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDEDVDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNSGVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGALTAMELASMFEYDLK

Homology

[Close]

BLAST of Cla022008 vs. Swiss-Prot
Match: RISB_ARATH (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana GN=At2g44050 PE=2 SV=1)

HSP 1 Score: 259.2 bits (661), Expect = 4.2e-68
Identity = 126/194 (64.95%), Postives = 158/194 (81.44%), Query Frame = 1


Query: 36  GTLSAKSQPLSFSSQLK-LPNDASPTNDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGR 95
           G+   KS  LSFSS      +  +   + RSSF QTAAVRH+ GSL +  GLRFA+VV R
Sbjct: 34  GSSVNKSNNLSFSSSTSGFASPLAVEKELRSSFVQTAAVRHVTGSLIRGEGLRFAIVVAR 93

Query: 96  FNEIVTRPMLEGALSTFKSYSVQDEDVDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAV 155
           FNE+VT+ +LEGA+ TFK YSV++ED++V+WVPGSF+I VVA+ LG+SGK+HAVLCIGAV
Sbjct: 94  FNEVVTKLLLEGAIETFKKYSVREEDIEVIWVPGSFEIGVVAQNLGKSGKFHAVLCIGAV 153

Query: 156 IRGDTSHYDAVVNSAASGVLSAGLNSGVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGAL 215
           IRGDT+HYDAV NSAASGVLSA +NSGVPC+F VLTC++++QA +R+GGKAGNKG+E AL
Sbjct: 154 IRGDTTHYDAVANSAASGVLSASINSGVPCIFGVLTCEDMDQALNRSGGKAGNKGAETAL 213

Query: 216 TAMELASMFEYDLK 229
           TA+E+AS+FE+ LK
Sbjct: 214 TALEMASLFEHHLK 227

[Close]

BLAST of Cla022008 vs. Swiss-Prot
Match: RISB_SPIOL (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 241.9 bits (616), Expect = 6.9e-63
Identity = 125/199 (62.81%), Postives = 153/199 (76.88%), Query Frame = 1


Query: 33  QFQGTLSAKSQPLSFSSQLK---LPNDASPTNDHRSSFAQTAAVRHIVGSLAKAGGLRFA 92
           Q   T    S PLS SS      L + AS    +R+SF  T AVR + G + KA   RFA
Sbjct: 25  QKSSTFLPFSAPLSSSSSFPGCGLVHVAS-NKKNRASFVVTNAVRELEGYVTKAQSFRFA 84

Query: 93  VVVGRFNEIVTRPMLEGALSTFKSYSVQDEDVDVVWVPGSFDIPVVAERLGRSGKYHAVL 152
           +VV RFNE VTR ++EGAL TFK YSV +ED+DVVWVPG++++ V A+ LG+SGKYHA++
Sbjct: 85  IVVARFNEFVTRRLMEGALDTFKKYSV-NEDIDVVWVPGAYELGVTAQALGKSGKYHAIV 144

Query: 153 CIGAVIRGDTSHYDAVVNSAASGVLSAGLNSGVPCVFSVLTCDNLEQAFDRAGGKAGNKG 212
           C+GAV++GDTSHYDAVVNSA+SGVLSAGLNSGVPCVF VLTCDN++QA +RAGGKAGNKG
Sbjct: 145 CLGAVVKGDTSHYDAVVNSASSGVLSAGLNSGVPCVFGVLTCDNMDQAINRAGGKAGNKG 204

Query: 213 SEGALTAMELASMFEYDLK 229
           +E ALTA+E+AS+FE+ LK
Sbjct: 205 AESALTAIEMASLFEHHLK 221

[Close]

BLAST of Cla022008 vs. Swiss-Prot
Match: RISB_PELTS (6,7-dimethyl-8-ribityllumazine synthase OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=ribH PE=3 SV=1)

HSP 1 Score: 165.6 bits (418), Expect = 6.2e-40
Identity = 75/150 (50.00%), Postives = 104/150 (69.33%), Query Frame = 1


Query: 75  HIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDEDVDVVWVPGSFDIPV 134
           H++G      GLRF +V+GRFNE +T  +L GAL     + V D+D++V WVPG+F+IP+
Sbjct: 8   HLIGQ-----GLRFGIVIGRFNEFITNKLLSGALDALNRHGVADQDIEVAWVPGAFEIPM 67

Query: 135 VAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNSGVPCVFSVLTCDNL 194
           VA ++  + KY AV+C+GAVIRG T H+D V    A GV   GL SGVP +F V+T D++
Sbjct: 68  VARKMASAMKYDAVICLGAVIRGATPHFDYVAGEVAKGVARIGLESGVPTIFGVITADSI 127

Query: 195 EQAFDRAGGKAGNKGSEGALTAMELASMFE 225
           EQA +RAG KAGNKG + A+TA+E+A++ +
Sbjct: 128 EQAIERAGAKAGNKGWDAAVTAIEMANLMK 152

[Close]

BLAST of Cla022008 vs. Swiss-Prot
Match: RISB_CLOB8 (6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium beijerinckii (strain ATCC 51743 / NCIMB 8052) GN=ribH PE=3 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 1.2e-38
Identity = 70/138 (50.72%), Postives = 102/138 (73.91%), Query Frame = 1


Query: 85  GLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDEDVDVVWVPGSFDIPVVAERLGRSGK 144
           GL+F +VVGRFNE +   +LEGA+   K + V++ED+D+ WVPG+F+IP++A+++ +S K
Sbjct: 12  GLKFGIVVGRFNEFIGGKLLEGAIDGLKRHGVKEEDIDIAWVPGAFEIPLIAKKMAKSPK 71

Query: 145 YHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNSGVPCVFSVLTCDNLEQAFDRAGGK 204
           Y  V+C+GAVI+G TSHYD V +  + G+ S  L SG P +F VLT + +EQA +RAG K
Sbjct: 72  YDGVICLGAVIKGSTSHYDYVCSEVSKGIASVSLESGKPVIFGVLTTNTIEQAIERAGTK 131

Query: 205 AGNKGSEGALTAMELASM 223
           AGNKG E A++A+E+A++
Sbjct: 132 AGNKGYESAVSAIEMANL 149

[Close]

BLAST of Cla022008 vs. Swiss-Prot
Match: RISB_ACTPL (6,7-dimethyl-8-ribityllumazine synthase OS=Actinobacillus pleuropneumoniae GN=ribH PE=3 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-38
Identity = 74/149 (49.66%), Postives = 103/149 (69.13%), Query Frame = 1


Query: 76  IVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDEDVDVVWVPGSFDIPVV 135
           I G+L  A GL+F +V  RFN+ +   +L GA+ T   +   + D+D  WVPG+F+IP+V
Sbjct: 4   ITGNLV-ATGLKFGIVTARFNDFINDKLLSGAIDTLVRHGAYENDIDTAWVPGAFEIPLV 63

Query: 136 AERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNSGVPCVFSVLTCDNLE 195
           A+++  SGKY AV+C+G VIRG T+HYD V N AA G+ +  L +GVP +F VLT +N+E
Sbjct: 64  AKKMANSGKYDAVICLGTVIRGSTTHYDYVCNEAAKGIGAVALETGVPVIFGVLTTENIE 123

Query: 196 QAFDRAGGKAGNKGSEGALTAMELASMFE 225
           QA +RAG KAGNKGSE AL A+E+ ++ +
Sbjct: 124 QAIERAGTKAGNKGSECALGAIEIVNVLK 151

[Close]

BLAST of Cla022008 vs. TrEMBL
Match: L0C9N6_MOMCH (6,7-dimethyl-8-ribityllumazine synthase OS=Momordica charantia PE=2 SV=1)

HSP 1 Score: 400.6 bits (1028), Expect = 1.3e-108
Identity = 201/228 (88.16%), Postives = 213/228 (93.42%), Query Frame = 1


Query: 1   MAASFATPAQSLVHRQNLTFAFSNSNFKRTQLQFQGTLSAKSQPLSFSSQLKLPNDASPT 60
           MAASFA+PAQ L+HRQ+L  AF+ SNF RTQLQF G   AKSQPLSFSSQLKL NDASP 
Sbjct: 1   MAASFASPAQGLLHRQHLPIAFTTSNFNRTQLQFHGATPAKSQPLSFSSQLKLSNDASPR 60

Query: 61  NDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120
           NDHRSSFAQTAAVRHIVGSL+KA GLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED
Sbjct: 61  NDHRSSFAQTAAVRHIVGSLSKAEGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120

Query: 121 VDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNS 180
           +DVVWVPGSFDIPVVAERLG SGKYHA+LCIGAVI+GDTSHYDAVVNS ASGVLSAGL S
Sbjct: 121 IDVVWVPGSFDIPVVAERLGNSGKYHAILCIGAVIKGDTSHYDAVVNSTASGVLSAGLKS 180

Query: 181 GVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGALTAMELASMFEYDLK 229
           GVPCVFSVLTCDNL+QAF+RAGGK+GNKGSEGALTAMELASMFE+DLK
Sbjct: 181 GVPCVFSVLTCDNLDQAFNRAGGKSGNKGSEGALTAMELASMFEHDLK 228

[Close]

BLAST of Cla022008 vs. TrEMBL
Match: A0A0A0KGW6_CUCSA (6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis sativus GN=Csa_6G366300 PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 2.9e-108
Identity = 202/228 (88.60%), Postives = 210/228 (92.11%), Query Frame = 1


Query: 1   MAASFATPAQSLVHRQNLTFAFSNSNFKRTQLQFQGTLSAKSQPLSFSSQLKLPNDASPT 60
           MAASFA PAQ LVHRQNLT +FSN NFK TQLQFQGTLSAKSQPLSFSSQ  L N  S  
Sbjct: 36  MAASFAAPAQGLVHRQNLTLSFSNYNFKPTQLQFQGTLSAKSQPLSFSSQFNLLNHPSSP 95

Query: 61  NDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120
           N+HRSSFA TAAVRHI GSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED
Sbjct: 96  NNHRSSFAHTAAVRHIAGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 155

Query: 121 VDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNS 180
           +DVVWVPGSFDIPVVA+RLG+SGKYHAVLCIGAVIRGDTSHYDAVVN +ASGVLSAGLNS
Sbjct: 156 IDVVWVPGSFDIPVVAQRLGQSGKYHAVLCIGAVIRGDTSHYDAVVNCSASGVLSAGLNS 215

Query: 181 GVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGALTAMELASMFEYDLK 229
           GVPC+FSVLTCD LEQ FDRAGGK GNKGSEGALTAMELASMFE+DLK
Sbjct: 216 GVPCIFSVLTCDTLEQGFDRAGGKVGNKGSEGALTAMELASMFEHDLK 263

[Close]

BLAST of Cla022008 vs. TrEMBL
Match: E7BRS1_CUCSA (6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis sativus PE=3 SV=1)

HSP 1 Score: 399.4 bits (1025), Expect = 2.9e-108
Identity = 202/228 (88.60%), Postives = 210/228 (92.11%), Query Frame = 1


Query: 1   MAASFATPAQSLVHRQNLTFAFSNSNFKRTQLQFQGTLSAKSQPLSFSSQLKLPNDASPT 60
           MAASFA PAQ LVHRQNLT +FSN NFK TQLQFQGTLSAKSQPLSFSSQ  L N  S  
Sbjct: 1   MAASFAAPAQGLVHRQNLTLSFSNYNFKPTQLQFQGTLSAKSQPLSFSSQFNLLNHPSSP 60

Query: 61  NDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120
           N+HRSSFA TAAVRHI GSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED
Sbjct: 61  NNHRSSFAHTAAVRHIAGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120

Query: 121 VDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNS 180
           +DVVWVPGSFDIPVVA+RLG+SGKYHAVLCIGAVIRGDTSHYDAVVN +ASGVLSAGLNS
Sbjct: 121 IDVVWVPGSFDIPVVAQRLGQSGKYHAVLCIGAVIRGDTSHYDAVVNCSASGVLSAGLNS 180

Query: 181 GVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGALTAMELASMFEYDLK 229
           GVPC+FSVLTCD LEQ FDRAGGK GNKGSEGALTAMELASMFE+DLK
Sbjct: 181 GVPCIFSVLTCDTLEQGFDRAGGKVGNKGSEGALTAMELASMFEHDLK 228

[Close]

BLAST of Cla022008 vs. TrEMBL
Match: B7SIS4_CUCSA (6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 395.2 bits (1014), Expect = 5.4e-107
Identity = 200/228 (87.72%), Postives = 209/228 (91.67%), Query Frame = 1


Query: 1   MAASFATPAQSLVHRQNLTFAFSNSNFKRTQLQFQGTLSAKSQPLSFSSQLKLPNDASPT 60
           MAASFA PAQ LVHRQNLT +FSN NFK TQLQFQGTL AKSQPLSFSSQ  L N  S  
Sbjct: 1   MAASFAAPAQGLVHRQNLTLSFSNYNFKPTQLQFQGTLPAKSQPLSFSSQFNLLNHPSSP 60

Query: 61  NDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120
           N+HRSSFA TAAVRHI GSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED
Sbjct: 61  NNHRSSFAHTAAVRHIAGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120

Query: 121 VDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNS 180
           +DVVWVPGSFDIPVVA+RLG+SGKYHAVLCIGAVIRGDTS+YDAVVN +ASGVLSAGLNS
Sbjct: 121 IDVVWVPGSFDIPVVAQRLGQSGKYHAVLCIGAVIRGDTSYYDAVVNCSASGVLSAGLNS 180

Query: 181 GVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGALTAMELASMFEYDLK 229
           GVPC+FSVLTCD LEQ FDRAGGK GNKGSEGALTAMELASMFE+DLK
Sbjct: 181 GVPCIFSVLTCDTLEQGFDRAGGKVGNKGSEGALTAMELASMFEHDLK 228

[Close]

BLAST of Cla022008 vs. TrEMBL
Match: W9SAX0_9ROSA (Cytochrome c1-1, heme protein OS=Morus notabilis GN=L484_013818 PE=3 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 2.6e-69
Identity = 144/228 (63.16%), Postives = 174/228 (76.32%), Query Frame = 1


Query: 2   AASFATPAQSLVHRQNLTFAFSNSNFKRTQLQFQGTLSAKSQPLSFSSQLKL-PNDASPT 61
           AAS +  A  LV R  +  A   S      L  Q     +   LSFSS     P  +  +
Sbjct: 415 AASLSFAASRLVPRCQVK-ASQLSQDSAPILSLQSRSWTQRPQLSFSSSSSSWPGASIES 474

Query: 62  NDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 121
           NDH SSFA+T A+RH+VGSL    GLRFAVVV RFNEIVT+P+LEGAL+TFK+Y+V +ED
Sbjct: 475 NDHCSSFARTNAIRHLVGSLTTTHGLRFAVVVARFNEIVTKPLLEGALATFKAYNVAEED 534

Query: 122 VDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNS 181
           VDVVWVPGSF+I VVA +LG+SG+Y+A+LCIGAVIRGDT+HYDAV NSAASGVLSA LNS
Sbjct: 535 VDVVWVPGSFEIGVVATKLGKSGRYNAILCIGAVIRGDTTHYDAVANSAASGVLSASLNS 594

Query: 182 GVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGALTAMELASMFEYDLK 229
           GVPCVF VLTC+++EQA +RAGGK+GNKGSE ALTA+E+AS+FE+ LK
Sbjct: 595 GVPCVFGVLTCEDMEQALNRAGGKSGNKGSEAALTAIEMASLFEHHLK 641

[Close]

BLAST of Cla022008 vs. NCBI nr
Match: gi|659089595|ref|XP_008445594.1| (PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic, partial [Cucumis melo])

HSP 1 Score: 402.5 bits (1033), Expect = 4.8e-109
Identity = 204/226 (90.27%), Postives = 213/226 (94.25%), Query Frame = 1


Query: 1   MAASFATPAQSLVHRQNLTFAFSNSNFKRTQLQFQGTLSAKSQPLSFSSQLKLPNDASPT 60
           MAASFA PAQ LVHRQNLT +FSNSNFK TQLQFQG+LS+KSQPLSFSS+L L N AS  
Sbjct: 1   MAASFAAPAQGLVHRQNLTLSFSNSNFKPTQLQFQGSLSSKSQPLSFSSRLNLLNHASSP 60

Query: 61  NDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120
           N+HRSSFA TAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED
Sbjct: 61  NNHRSSFAHTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120

Query: 121 VDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNS 180
           VDVVWVPGSFDIPVVA++LG+SGKYHAVLCIGAVIRGDTSHYDAVVNS+ASGVLSAGLNS
Sbjct: 121 VDVVWVPGSFDIPVVAQKLGQSGKYHAVLCIGAVIRGDTSHYDAVVNSSASGVLSAGLNS 180

Query: 181 GVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGALTAMELASMFEYD 227
           GVPCVFSVLTCD LEQ FDRAGGK GNKGSEGALTAMELASMFEYD
Sbjct: 181 GVPCVFSVLTCDTLEQGFDRAGGKVGNKGSEGALTAMELASMFEYD 226

[Close]

BLAST of Cla022008 vs. NCBI nr
Match: gi|429537127|gb|AFZ99646.1| (lumazine synthase [Momordica charantia])

HSP 1 Score: 400.6 bits (1028), Expect = 1.8e-108
Identity = 201/228 (88.16%), Postives = 213/228 (93.42%), Query Frame = 1


Query: 1   MAASFATPAQSLVHRQNLTFAFSNSNFKRTQLQFQGTLSAKSQPLSFSSQLKLPNDASPT 60
           MAASFA+PAQ L+HRQ+L  AF+ SNF RTQLQF G   AKSQPLSFSSQLKL NDASP 
Sbjct: 1   MAASFASPAQGLLHRQHLPIAFTTSNFNRTQLQFHGATPAKSQPLSFSSQLKLSNDASPR 60

Query: 61  NDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120
           NDHRSSFAQTAAVRHIVGSL+KA GLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED
Sbjct: 61  NDHRSSFAQTAAVRHIVGSLSKAEGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120

Query: 121 VDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNS 180
           +DVVWVPGSFDIPVVAERLG SGKYHA+LCIGAVI+GDTSHYDAVVNS ASGVLSAGL S
Sbjct: 121 IDVVWVPGSFDIPVVAERLGNSGKYHAILCIGAVIKGDTSHYDAVVNSTASGVLSAGLKS 180

Query: 181 GVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGALTAMELASMFEYDLK 229
           GVPCVFSVLTCDNL+QAF+RAGGK+GNKGSEGALTAMELASMFE+DLK
Sbjct: 181 GVPCVFSVLTCDNLDQAFNRAGGKSGNKGSEGALTAMELASMFEHDLK 228

[Close]

BLAST of Cla022008 vs. NCBI nr
Match: gi|700192428|gb|KGN47632.1| (6,7-dimethyl-8-ribityllumazine synthase [Cucumis sativus])

HSP 1 Score: 399.4 bits (1025), Expect = 4.1e-108
Identity = 202/228 (88.60%), Postives = 210/228 (92.11%), Query Frame = 1


Query: 1   MAASFATPAQSLVHRQNLTFAFSNSNFKRTQLQFQGTLSAKSQPLSFSSQLKLPNDASPT 60
           MAASFA PAQ LVHRQNLT +FSN NFK TQLQFQGTLSAKSQPLSFSSQ  L N  S  
Sbjct: 36  MAASFAAPAQGLVHRQNLTLSFSNYNFKPTQLQFQGTLSAKSQPLSFSSQFNLLNHPSSP 95

Query: 61  NDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120
           N+HRSSFA TAAVRHI GSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED
Sbjct: 96  NNHRSSFAHTAAVRHIAGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 155

Query: 121 VDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNS 180
           +DVVWVPGSFDIPVVA+RLG+SGKYHAVLCIGAVIRGDTSHYDAVVN +ASGVLSAGLNS
Sbjct: 156 IDVVWVPGSFDIPVVAQRLGQSGKYHAVLCIGAVIRGDTSHYDAVVNCSASGVLSAGLNS 215

Query: 181 GVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGALTAMELASMFEYDLK 229
           GVPC+FSVLTCD LEQ FDRAGGK GNKGSEGALTAMELASMFE+DLK
Sbjct: 216 GVPCIFSVLTCDTLEQGFDRAGGKVGNKGSEGALTAMELASMFEHDLK 263

[Close]

BLAST of Cla022008 vs. NCBI nr
Match: gi|311701739|gb|ADQ00634.1| (6,7-dimethyl-8-ribityllumazine synthase [Cucumis sativus])

HSP 1 Score: 399.4 bits (1025), Expect = 4.1e-108
Identity = 202/228 (88.60%), Postives = 210/228 (92.11%), Query Frame = 1


Query: 1   MAASFATPAQSLVHRQNLTFAFSNSNFKRTQLQFQGTLSAKSQPLSFSSQLKLPNDASPT 60
           MAASFA PAQ LVHRQNLT +FSN NFK TQLQFQGTLSAKSQPLSFSSQ  L N  S  
Sbjct: 1   MAASFAAPAQGLVHRQNLTLSFSNYNFKPTQLQFQGTLSAKSQPLSFSSQFNLLNHPSSP 60

Query: 61  NDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120
           N+HRSSFA TAAVRHI GSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED
Sbjct: 61  NNHRSSFAHTAAVRHIAGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120

Query: 121 VDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNS 180
           +DVVWVPGSFDIPVVA+RLG+SGKYHAVLCIGAVIRGDTSHYDAVVN +ASGVLSAGLNS
Sbjct: 121 IDVVWVPGSFDIPVVAQRLGQSGKYHAVLCIGAVIRGDTSHYDAVVNCSASGVLSAGLNS 180

Query: 181 GVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGALTAMELASMFEYDLK 229
           GVPC+FSVLTCD LEQ FDRAGGK GNKGSEGALTAMELASMFE+DLK
Sbjct: 181 GVPCIFSVLTCDTLEQGFDRAGGKVGNKGSEGALTAMELASMFEHDLK 228

[Close]

BLAST of Cla022008 vs. NCBI nr
Match: gi|821595313|ref|NP_001295819.1| (6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Cucumis sativus])

HSP 1 Score: 395.2 bits (1014), Expect = 7.7e-107
Identity = 200/228 (87.72%), Postives = 209/228 (91.67%), Query Frame = 1


Query: 1   MAASFATPAQSLVHRQNLTFAFSNSNFKRTQLQFQGTLSAKSQPLSFSSQLKLPNDASPT 60
           MAASFA PAQ LVHRQNLT +FSN NFK TQLQFQGTL AKSQPLSFSSQ  L N  S  
Sbjct: 1   MAASFAAPAQGLVHRQNLTLSFSNYNFKPTQLQFQGTLPAKSQPLSFSSQFNLLNHPSSP 60

Query: 61  NDHRSSFAQTAAVRHIVGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120
           N+HRSSFA TAAVRHI GSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED
Sbjct: 61  NNHRSSFAHTAAVRHIAGSLAKAGGLRFAVVVGRFNEIVTRPMLEGALSTFKSYSVQDED 120

Query: 121 VDVVWVPGSFDIPVVAERLGRSGKYHAVLCIGAVIRGDTSHYDAVVNSAASGVLSAGLNS 180
           +DVVWVPGSFDIPVVA+RLG+SGKYHAVLCIGAVIRGDTS+YDAVVN +ASGVLSAGLNS
Sbjct: 121 IDVVWVPGSFDIPVVAQRLGQSGKYHAVLCIGAVIRGDTSYYDAVVNCSASGVLSAGLNS 180

Query: 181 GVPCVFSVLTCDNLEQAFDRAGGKAGNKGSEGALTAMELASMFEYDLK 229
           GVPC+FSVLTCD LEQ FDRAGGK GNKGSEGALTAMELASMFE+DLK
Sbjct: 181 GVPCIFSVLTCDTLEQGFDRAGGKVGNKGSEGALTAMELASMFEHDLK 228

The following BLAST results are available for this feature:

BLAST of Cla022008 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RISB_ARATH	4.2e-68	64.95	6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Arabidopsis thaliana G...	[more]
RISB_SPIOL	6.9e-63	62.81	6,7-dimethyl-8-ribityllumazine synthase, chloroplastic OS=Spinacia oleracea PE=1...	[more]
RISB_PELTS	6.2e-40	50.00	6,7-dimethyl-8-ribityllumazine synthase OS=Pelotomaculum thermopropionicum (stra...	[more]
RISB_CLOB8	1.2e-38	50.72	6,7-dimethyl-8-ribityllumazine synthase OS=Clostridium beijerinckii (strain ATCC...	[more]
RISB_ACTPL	2.6e-38	49.66	6,7-dimethyl-8-ribityllumazine synthase OS=Actinobacillus pleuropneumoniae GN=ri...	[more]

BLAST of Cla022008 vs. TrEMBL


Match Name	E-value	Identity	Description
L0C9N6_MOMCH	1.3e-108	88.16	6,7-dimethyl-8-ribityllumazine synthase OS=Momordica charantia PE=2 SV=1	[more]
A0A0A0KGW6_CUCSA	2.9e-108	88.60	6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis sativus GN=Csa_6G366300 PE=3 ...	[more]
E7BRS1_CUCSA	2.9e-108	88.60	6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis sativus PE=3 SV=1	[more]
B7SIS4_CUCSA	5.4e-107	87.72	6,7-dimethyl-8-ribityllumazine synthase OS=Cucumis sativus PE=2 SV=1	[more]
W9SAX0_9ROSA	2.6e-69	63.16	Cytochrome c1-1, heme protein OS=Morus notabilis GN=L484_013818 PE=3 SV=1	[more]

BLAST of Cla022008 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089595\|ref\|XP_008445594.1\|	4.8e-109	90.27	PREDICTED: 6,7-dimethyl-8-ribityllumazine synthase, chloroplastic, partial [Cucu...	[more]
gi\|429537127\|gb\|AFZ99646.1\|	1.8e-108	88.16	lumazine synthase [Momordica charantia]	[more]
gi\|700192428\|gb\|KGN47632.1\|	4.1e-108	88.60	6,7-dimethyl-8-ribityllumazine synthase [Cucumis sativus]	[more]
gi\|311701739\|gb\|ADQ00634.1\|	4.1e-108	88.60	6,7-dimethyl-8-ribityllumazine synthase [Cucumis sativus]	[more]
gi\|821595313\|ref\|NP_001295819.1\|	7.7e-107	87.72	6,7-dimethyl-8-ribityllumazine synthase, chloroplastic [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002180	LS/RS

Vocabulary: **Biological Process**
Term	Definition
GO:0009231	riboflavin biosynthetic process

Vocabulary: **Cellular Component**
Term	Definition
GO:0009349	riboflavin synthase complex

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006007	glucose catabolic process
biological_process	GO:0009867	jasmonic acid mediated signaling pathway
biological_process	GO:0009231	riboflavin biosynthetic process
cellular_component	GO:0009570	chloroplast stroma
cellular_component	GO:0009349	riboflavin synthase complex
molecular_function	GO:0000906	6,7-dimethyl-8-ribityllumazine synthase activity
molecular_function	GO:0016740	transferase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU07264	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla022008	Cla022008.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU07264	WMU07264	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002180	6,7-dimethyl-8-ribityllumazine synthase	GENE3D	G3DSA:3.40.50.960		coord: 76..223 score: 6.2
IPR002180	6,7-dimethyl-8-ribityllumazine synthase	HAMAP	MF_00178	Lumazine_synth	coord: 81..226 score: 26
IPR002180	6,7-dimethyl-8-ribityllumazine synthase	PANTHER	PTHR21058	6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE DMRL SYNTHASE LUMAZINE SYNTHASE	coord: 64..228 score: 5.5
IPR002180	6,7-dimethyl-8-ribityllumazine synthase	PFAM	PF00885	DMRL_synthase	coord: 85..222 score: 2.2
IPR002180	6,7-dimethyl-8-ribityllumazine synthase	TIGRFAMs	TIGR00114	TIGR00114	coord: 86..222 score: 6.6
IPR002180	6,7-dimethyl-8-ribityllumazine synthase	unknown	SSF52121	Lumazine synthase	coord: 78..224 score: 1.96
None	No IPR available	PANTHER	PTHR21058:SF0	6,7-DIMETHYL-8-RIBITYLLUMAZINE SYNTHASE	coord: 64..228 score: 5.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla022008	Cla97C08G153070	Watermelon (97103) v2	wmwmbB100
Cla022008	Csa6G366300	Cucumber (Chinese Long) v2	cuwmB456
Cla022008	MELO3C011439	Melon (DHL92) v3.5.1	mewmB301
Cla022008	ClCG08G010210	Watermelon (Charleston Gray)	wcgwmB400
Cla022008	CSPI06G19490	Wild cucumber (PI 183967)	cpiwmB471
Cla022008	Cucsa.327700	Cucumber (Gy14) v1	cgywmB593
Cla022008	CmaCh05G004350	Cucurbita maxima (Rimu)	cmawmB751
Cla022008	CmoCh05G004570	Cucurbita moschata (Rifu)	cmowmB746
Cla022008	CmoCh12G000710	Cucurbita moschata (Rifu)	cmowmB135
Cla022008	Lsi08G008790	Bottle gourd (USVL1VR-Ls)	lsiwmB465
Cla022008	Cp4.1LG11g03640	Cucurbita pepo (Zucchini)	cpewmB099
Cla022008	Cp4.1LG07g00610	Cucurbita pepo (Zucchini)	cpewmB783
Cla022008	CsGy6G018980	Cucumber (Gy14) v2	cgybwmB427
Cla022008	MELO3C011439.2	Melon (DHL92) v3.6.1	medwmB296
Cla022008	Carg26691	Silver-seed gourd	carwmB0012
Cla022008	Carg09282	Silver-seed gourd	carwmB0134
Cla022008	CsaV3_6G032410	Cucumber (Chinese Long) v3	cucwmB481
Cla022008	Bhi04G001140	Wax gourd	wgowmB312

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla022008	Wax gourd	wgowmB300
Cla022008	Watermelon (97103) v1	wmwmB071
Cla022008	Cucurbita maxima (Rimu)	cmawmB149
Cla022008	Wild cucumber (PI 183967)	cpiwmB009
Cla022008	Cucumber (Gy14) v2	cgybwmB009
Cla022008	Cucumber (Chinese Long) v3	cucwmB011