Cla021464 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021464
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Glutathione S-transferase (AHRD V1 ***- Q8H9E5_CUCMA); contains Interpro domain(s) IPR010987 Glutathione S-transferase, C-terminal-like
Location	Chr5 : 3381197 .. 3381514 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTGTTCCGGCGAGAAGGAACAGAGGAAGGCGAAGCAGGAAAGCTTAGAAATGCTGCGAATCTTAGAAGAGCAAGTGATCAGTAGAGAGAAGATCGGGACGGTGGACTTGGCATTCGGACAATTTGTAGAGTGGTTGGGAGTGTTTGAAAAGGTAATCGGCGAGAAATTGATGGAATCAGATTCATTTCCTCGGCTAGAAGCTTGGAGCAGAGGTTTCATGGCAGCTCCAGCGATCAAAGAGAGTCGTGCCGGGTCGAGATCGGATGGTAGAGGGTCTGGCTTCTGCAACGTTCATCGTTGGATGCCAATCTGA

mRNA sequence

ATGTTCTGTTCCGGCGAGAAGGAACAGAGGAAGGCGAAGCAGGAAAGCTTAGAAATGCTGCGAATCTTAGAAGAGCAAGTGATCAGTAGAGAGAAGATCGGGACGGTGGACTTGGCATTCGGACAATTTGTAGAGTGGTTGGGAGTGTTTGAAAAGGTAATCGGCGAGAAATTGATGGAATCAGATTCATTTCCTCGGCTAGAAGCTTGGAGCAGAGGTTTCATGGCAGCTCCAGCGATCAAAGAGAGTCGTGCCGGGTCGAGATCGGATGGTAGAGGGTCTGGCTTCTGCAACGTTCATCGTTGGATGCCAATCTGA

Coding sequence (CDS)

ATGTTCTGTTCCGGCGAGAAGGAACAGAGGAAGGCGAAGCAGGAAAGCTTAGAAATGCTGCGAATCTTAGAAGAGCAAGTGATCAGTAGAGAGAAGATCGGGACGGTGGACTTGGCATTCGGACAATTTGTAGAGTGGTTGGGAGTGTTTGAAAAGGTAATCGGCGAGAAATTGATGGAATCAGATTCATTTCCTCGGCTAGAAGCTTGGAGCAGAGGTTTCATGGCAGCTCCAGCGATCAAAGAGAGTCGTGCCGGGTCGAGATCGGATGGTAGAGGGTCTGGCTTCTGCAACGTTCATCGTTGGATGCCAATCTGA

Protein sequence

MFCSGEKEQRKAKQESLEMLRILEEQVISREKIGTVDLAFGQFVEWLGVFEKVIGEKLMESDSFPRLEAWSRGFMAAPAIKESRAGSRSDGRGSGFCNVHRWMPI

Homology

[Close]

BLAST of Cla021464 vs. Swiss-Prot
Match: GSTU8_ARATH (Glutathione S-transferase U8 OS=Arabidopsis thaliana GN=GSTU8 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.2e-07
Identity = 29/82 (35.37%), Postives = 45/82 (54.88%), Query Frame = 1


Query: 6   EKEQRKAKQESLEMLRILEEQVISR-----EKIGTVDLAFGQFVEWLGVFEKVIGEKLME 65
           E E+ K  +E+ E L+ LE+++  +     E IG VD+A      WLG+F++  G  +M 
Sbjct: 121 ESEREKEVKEAYEGLKCLEKELGDKLFFGGETIGFVDIAADFIGYWLGIFQEASGVTIMT 180

Query: 66  SDSFPRLEAWSRGFMAAPAIKE 83
           ++ FP+L+ WS  F+    IKE
Sbjct: 181 AEEFPKLQRWSEDFVGNNFIKE 202

[Close]

BLAST of Cla021464 vs. TrEMBL
Match: A0A0A0L4U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133880 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.3e-25
Identity = 67/91 (73.63%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISREK------IGTVDLAFGQFVEWLGVFEKVI 60
           MF  G KEQ  AK ESLEMLRILEE+VI  EK      IG VDLAFG+FVEWLGVFE+VI
Sbjct: 105 MFYPGGKEQG-AKVESLEMLRILEEEVIGEEKFFGGEKIGMVDLAFGEFVEWLGVFEEVI 164

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESRA 86
           GEKL+ES SFPRLEAWSR FMA PAI E+RA
Sbjct: 165 GEKLLESGSFPRLEAWSRAFMAVPAISENRA 194

[Close]

BLAST of Cla021464 vs. TrEMBL
Match: A0A0A0L6W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133890 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.4e-14
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MFCS  +E+ K ++ESLEML+I+EE+ I        EKIG VDL +G F  WLGV E +I
Sbjct: 110 MFCSSGEEREKKRRESLEMLQIVEEKAIEDQKFFGGEKIGMVDLVYGVFGYWLGVIEDLI 169

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKES 84
           GEKL+E+ +FP+L A  + F+  P I+E+
Sbjct: 170 GEKLIETSTFPQLHARIKVFLQDPIIREN 198

[Close]

BLAST of Cla021464 vs. TrEMBL
Match: D2X9T5_POPTR (Putative tau class glutathione transferase GSTU53 OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MF S  +EQ KA ++SLEML+ +EE  + +      +KI  VD+A+G   +WL V E+V 
Sbjct: 110 MFHSSGEEQEKAVKDSLEMLKTIEEHALGKKRFFCGDKISLVDIAYGWIAQWLAVLEEVA 169

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESRAG 87
           G KLME   FPRL  W + F   P IKE+  G
Sbjct: 170 GIKLMEPQKFPRLHTWIKNFKDEPIIKENLPG 201

[Close]

BLAST of Cla021464 vs. TrEMBL
Match: U5G1L0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07130g PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MF S  +EQ KA ++SLEML+ +EE  + +      +KI  VD+A+G   +WL V E+V 
Sbjct: 28  MFHSSGEEQEKAVKDSLEMLKTIEEHALGKKRFFCGDKISLVDIAYGWIAQWLAVLEEVA 87

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESRAG 87
           G KLME   FPRL  W + F   P IKE+  G
Sbjct: 88  GIKLMEPQKFPRLHTWIKNFKDEPIIKENLPG 119

[Close]

BLAST of Cla021464 vs. TrEMBL
Match: D2X9T0_POPTR (Putative tau class glutathione transferase GSTU48 OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MF S  +EQ KA ++SLEML+ +EE  + +      +KI  VD+A+G   +WL V E+V 
Sbjct: 104 MFHSSGEEQEKAVKDSLEMLKTIEEHALGKKRFFCGDKISLVDIAYGWIAQWLAVLEEVA 163

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESRAG 87
           G KLME   FPRL  W + F   P IKE+  G
Sbjct: 164 GIKLMEPQKFPRLHTWIKNFKDEPIIKENLPG 195

[Close]

BLAST of Cla021464 vs. NCBI nr
Match: gi|778678023|ref|XP_004134391.2| (PREDICTED: probable glutathione S-transferase [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 7.6e-25
Identity = 67/91 (73.63%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISREK------IGTVDLAFGQFVEWLGVFEKVI 60
           MF  G KEQ  AK ESLEMLRILEE+VI  EK      IG VDLAFG+FVEWLGVFE+VI
Sbjct: 105 MFYPGGKEQG-AKVESLEMLRILEEEVIGEEKFFGGEKIGMVDLAFGEFVEWLGVFEEVI 164

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESRA 86
           GEKL+ES SFPRLEAWSR FMA PAI E+RA
Sbjct: 165 GEKLLESGSFPRLEAWSRAFMAVPAISENRA 194

[Close]

BLAST of Cla021464 vs. NCBI nr
Match: gi|659075970|ref|XP_008438429.1| (PREDICTED: probable glutathione S-transferase [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-24
Identity = 65/90 (72.22%), Postives = 72/90 (80.00%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MF  G KEQ  AK+ESLEMLRILEE+VI        EK+G VDLAFGQFVEWLGVFE+V 
Sbjct: 110 MFYPGGKEQG-AKEESLEMLRILEEEVIGEGKFFGGEKMGIVDLAFGQFVEWLGVFEEVT 169

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESR 85
           GEKL+ES SFPRLEAWSR FMA PAI+E+R
Sbjct: 170 GEKLLESGSFPRLEAWSRAFMAVPAIRENR 198

[Close]

BLAST of Cla021464 vs. NCBI nr
Match: gi|659075972|ref|XP_008438430.1| (PREDICTED: probable glutathione S-transferase [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-14
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MFCS  +E+ K K++SLEML+I+EE+ I        EKIG VDL +G F  WLGV E +I
Sbjct: 110 MFCSSGEEREKEKRKSLEMLQIVEEKAIDDRKFFGGEKIGMVDLVYGVFGYWLGVIEDLI 169

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKES 84
           G+KL+E+ SFPRL A  + F+  P I+E+
Sbjct: 170 GQKLIETPSFPRLHARIKNFLEDPIIREN 198

[Close]

BLAST of Cla021464 vs. NCBI nr
Match: gi|449432478|ref|XP_004134026.1| (PREDICTED: probable glutathione S-transferase [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MFCS  +E+ K ++ESLEML+I+EE+ I        EKIG VDL +G F  WLGV E +I
Sbjct: 110 MFCSSGEEREKKRRESLEMLQIVEEKAIEDQKFFGGEKIGMVDLVYGVFGYWLGVIEDLI 169

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKES 84
           GEKL+E+ +FP+L A  + F+  P I+E+
Sbjct: 170 GEKLIETSTFPQLHARIKVFLQDPIIREN 198

[Close]

BLAST of Cla021464 vs. NCBI nr
Match: gi|1009174837|ref|XP_015868553.1| (PREDICTED: probable glutathione S-transferase [Ziziphus jujuba])

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           +  SGE EQ KAK ESLE LR +EE  +        E+IG VD+AFG    WLGVFE+++
Sbjct: 112 LISSGE-EQEKAKNESLEFLRTIEEHGLGNKKFFGGEEIGIVDIAFGWMSLWLGVFEEIV 171

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKES 84
           G KL+E+  FPRL AW++ F   P IK++
Sbjct: 172 GVKLLEAHIFPRLYAWTKNFKEVPVIKQN 199

The following BLAST results are available for this feature:

BLAST of Cla021464 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GSTU8_ARATH	7.2e-07	35.37	Glutathione S-transferase U8 OS=Arabidopsis thaliana GN=GSTU8 PE=2 SV=1	[more]

BLAST of Cla021464 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4U8_CUCSA	5.3e-25	73.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133880 PE=3 SV=1	[more]
A0A0A0L6W9_CUCSA	9.4e-14	49.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133890 PE=4 SV=1	[more]
D2X9T5_POPTR	1.8e-12	44.57	Putative tau class glutathione transferase GSTU53 OS=Populus trichocarpa PE=2 SV...	[more]
U5G1L0_POPTR	1.8e-12	44.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07130g PE=4 SV=1	[more]
D2X9T0_POPTR	1.8e-12	44.57	Putative tau class glutathione transferase GSTU48 OS=Populus trichocarpa PE=2 SV...	[more]

BLAST of Cla021464 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778678023\|ref\|XP_004134391.2\|	7.6e-25	73.63	PREDICTED: probable glutathione S-transferase [Cucumis sativus]	[more]
gi\|659075970\|ref\|XP_008438429.1\|	1.7e-24	72.22	PREDICTED: probable glutathione S-transferase [Cucumis melo]	[more]
gi\|659075972\|ref\|XP_008438430.1\|	3.5e-14	50.56	PREDICTED: probable glutathione S-transferase [Cucumis melo]	[more]
gi\|449432478\|ref\|XP_004134026.1\|	1.3e-13	49.44	PREDICTED: probable glutathione S-transferase [Cucumis sativus]	[more]
gi\|1009174837\|ref\|XP_015868553.1\|	1.8e-13	49.44	PREDICTED: probable glutathione S-transferase [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR010987	Glutathione-S-Trfase_C-like

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:0005515	protein binding

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU09553	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021464	Cla021464.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU09553	WMU09553	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010987	Glutathione S-transferase, C-terminal-like	GENE3D	G3DSA:1.20.1050.10		coord: 5..83 score: 2.4
IPR010987	Glutathione S-transferase, C-terminal-like	unknown	SSF47616	GST C-terminal domain-like	coord: 5..84 score: 6.97
None	No IPR available	PANTHER	PTHR11260	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	coord: 6..83 score: 2.1
None	No IPR available	PANTHER	PTHR11260:SF227	SUBFAMILY NOT NAMED	coord: 6..83 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021464	CmoCh14G019070	Cucurbita moschata (Rifu)	cmowmB231
Cla021464	Lsi05G017910	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021464	MELO3C006354.2	Melon (DHL92) v3.6.1	medwmB447
Cla021464	Carg06260	Silver-seed gourd	carwmB0961

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021464	Watermelon (97103) v2	wmwmbB206
Cla021464	Watermelon (97103) v2	wmwmbB217
Cla021464	Watermelon (97103) v2	wmwmbB221
Cla021464	Wax gourd	wgowmB062
Cla021464	Wax gourd	wgowmB207
Cla021464	Wax gourd	wgowmB208
Cla021464	Wax gourd	wgowmB270
Cla021464	Watermelon (97103) v1	wmwmB100
Cla021464	Watermelon (97103) v1	wmwmB138
Cla021464	Cucumber (Gy14) v1	cgywmB248
Cla021464	Cucumber (Gy14) v1	cgywmB479
Cla021464	Cucurbita maxima (Rimu)	cmawmB242
Cla021464	Cucurbita maxima (Rimu)	cmawmB344
Cla021464	Cucurbita maxima (Rimu)	cmawmB495
Cla021464	Cucurbita maxima (Rimu)	cmawmB565
Cla021464	Cucurbita maxima (Rimu)	cmawmB798
Cla021464	Cucurbita maxima (Rimu)	cmawmB869
Cla021464	Cucurbita moschata (Rifu)	cmowmB340
Cla021464	Cucurbita moschata (Rifu)	cmowmB489
Cla021464	Cucurbita moschata (Rifu)	cmowmB559
Cla021464	Cucurbita moschata (Rifu)	cmowmB793
Cla021464	Cucurbita moschata (Rifu)	cmowmB856
Cla021464	Melon (DHL92) v3.5.1	mewmB371
Cla021464	Melon (DHL92) v3.5.1	mewmB413
Cla021464	Melon (DHL92) v3.5.1	mewmB461
Cla021464	Watermelon (Charleston Gray)	wcgwmB286
Cla021464	Watermelon (Charleston Gray)	wcgwmB331
Cla021464	Watermelon (Charleston Gray)	wcgwmB382
Cla021464	Cucumber (Chinese Long) v2	cuwmB122
Cla021464	Cucumber (Chinese Long) v2	cuwmB233
Cla021464	Cucumber (Chinese Long) v2	cuwmB253
Cla021464	Cucurbita pepo (Zucchini)	cpewmB151
Cla021464	Cucurbita pepo (Zucchini)	cpewmB331
Cla021464	Cucurbita pepo (Zucchini)	cpewmB613
Cla021464	Cucurbita pepo (Zucchini)	cpewmB706
Cla021464	Cucurbita pepo (Zucchini)	cpewmB845
Cla021464	Bottle gourd (USVL1VR-Ls)	lsiwmB017
Cla021464	Bottle gourd (USVL1VR-Ls)	lsiwmB367
Cla021464	Cucumber (Gy14) v2	cgybwmB117
Cla021464	Cucumber (Gy14) v2	cgybwmB217
Cla021464	Cucumber (Gy14) v2	cgybwmB237
Cla021464	Melon (DHL92) v3.6.1	medwmB404
Cla021464	Silver-seed gourd	carwmB0218
Cla021464	Silver-seed gourd	carwmB0223
Cla021464	Silver-seed gourd	carwmB0782
Cla021464	Silver-seed gourd	carwmB1075
Cla021464	Cucumber (Chinese Long) v3	cucwmB136
Cla021464	Cucumber (Chinese Long) v3	cucwmB239
Cla021464	Cucumber (Chinese Long) v3	cucwmB261