Cla021464.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021464
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Glutathione S-transferase (AHRD V1 ***- Q8H9E5_CUCMA); contains Interpro domain(s) IPR010987 Glutathione S-transferase, C-terminal-like
Location	Chr5 : 3381197 .. 3381514 (+)
Sequence length	318

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTGTTCCGGCGAGAAGGAACAGAGGAAGGCGAAGCAGGAAAGCTTAGAAATGCTGCGAATCTTAGAAGAGCAAGTGATCAGTAGAGAGAAGATCGGGACGGTGGACTTGGCATTCGGACAATTTGTAGAGTGGTTGGGAGTGTTTGAAAAGGTAATCGGCGAGAAATTGATGGAATCAGATTCATTTCCTCGGCTAGAAGCTTGGAGCAGAGGTTTCATGGCAGCTCCAGCGATCAAAGAGAGTCGTGCCGGGTCGAGATCGGATGGTAGAGGGTCTGGCTTCTGCAACGTTCATCGTTGGATGCCAATCTGA

mRNA sequence

ATGTTCTGTTCCGGCGAGAAGGAACAGAGGAAGGCGAAGCAGGAAAGCTTAGAAATGCTGCGAATCTTAGAAGAGCAAGTGATCAGTAGAGAGAAGATCGGGACGGTGGACTTGGCATTCGGACAATTTGTAGAGTGGTTGGGAGTGTTTGAAAAGGTAATCGGCGAGAAATTGATGGAATCAGATTCATTTCCTCGGCTAGAAGCTTGGAGCAGAGGTTTCATGGCAGCTCCAGCGATCAAAGAGAGTCGTGCCGGGTCGAGATCGGATGGTAGAGGGTCTGGCTTCTGCAACGTTCATCGTTGGATGCCAATCTGA

Coding sequence (CDS)

ATGTTCTGTTCCGGCGAGAAGGAACAGAGGAAGGCGAAGCAGGAAAGCTTAGAAATGCTGCGAATCTTAGAAGAGCAAGTGATCAGTAGAGAGAAGATCGGGACGGTGGACTTGGCATTCGGACAATTTGTAGAGTGGTTGGGAGTGTTTGAAAAGGTAATCGGCGAGAAATTGATGGAATCAGATTCATTTCCTCGGCTAGAAGCTTGGAGCAGAGGTTTCATGGCAGCTCCAGCGATCAAAGAGAGTCGTGCCGGGTCGAGATCGGATGGTAGAGGGTCTGGCTTCTGCAACGTTCATCGTTGGATGCCAATCTGA

Protein sequence

MFCSGEKEQRKAKQESLEMLRILEEQVISREKIGTVDLAFGQFVEWLGVFEKVIGEKLMESDSFPRLEAWSRGFMAAPAIKESRAGSRSDGRGSGFCNVHRWMPI

Homology

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BLAST of Cla021464 vs. Swiss-Prot
Match: GSTU8_ARATH (Glutathione S-transferase U8 OS=Arabidopsis thaliana GN=GSTU8 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 7.2e-07
Identity = 29/82 (35.37%), Postives = 45/82 (54.88%), Query Frame = 1


Query: 6   EKEQRKAKQESLEMLRILEEQVISR-----EKIGTVDLAFGQFVEWLGVFEKVIGEKLME 65
           E E+ K  +E+ E L+ LE+++  +     E IG VD+A      WLG+F++  G  +M 
Sbjct: 121 ESEREKEVKEAYEGLKCLEKELGDKLFFGGETIGFVDIAADFIGYWLGIFQEASGVTIMT 180

Query: 66  SDSFPRLEAWSRGFMAAPAIKE 83
           ++ FP+L+ WS  F+    IKE
Sbjct: 181 AEEFPKLQRWSEDFVGNNFIKE 202

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BLAST of Cla021464 vs. TrEMBL
Match: A0A0A0L4U8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133880 PE=3 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 5.3e-25
Identity = 67/91 (73.63%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISREK------IGTVDLAFGQFVEWLGVFEKVI 60
           MF  G KEQ  AK ESLEMLRILEE+VI  EK      IG VDLAFG+FVEWLGVFE+VI
Sbjct: 105 MFYPGGKEQG-AKVESLEMLRILEEEVIGEEKFFGGEKIGMVDLAFGEFVEWLGVFEEVI 164

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESRA 86
           GEKL+ES SFPRLEAWSR FMA PAI E+RA
Sbjct: 165 GEKLLESGSFPRLEAWSRAFMAVPAISENRA 194

[Close]

BLAST of Cla021464 vs. TrEMBL
Match: A0A0A0L6W9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133890 PE=4 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 9.4e-14
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MFCS  +E+ K ++ESLEML+I+EE+ I        EKIG VDL +G F  WLGV E +I
Sbjct: 110 MFCSSGEEREKKRRESLEMLQIVEEKAIEDQKFFGGEKIGMVDLVYGVFGYWLGVIEDLI 169

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKES 84
           GEKL+E+ +FP+L A  + F+  P I+E+
Sbjct: 170 GEKLIETSTFPQLHARIKVFLQDPIIREN 198

[Close]

BLAST of Cla021464 vs. TrEMBL
Match: D2X9T5_POPTR (Putative tau class glutathione transferase GSTU53 OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MF S  +EQ KA ++SLEML+ +EE  + +      +KI  VD+A+G   +WL V E+V 
Sbjct: 110 MFHSSGEEQEKAVKDSLEMLKTIEEHALGKKRFFCGDKISLVDIAYGWIAQWLAVLEEVA 169

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESRAG 87
           G KLME   FPRL  W + F   P IKE+  G
Sbjct: 170 GIKLMEPQKFPRLHTWIKNFKDEPIIKENLPG 201

[Close]

BLAST of Cla021464 vs. TrEMBL
Match: U5G1L0_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07130g PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MF S  +EQ KA ++SLEML+ +EE  + +      +KI  VD+A+G   +WL V E+V 
Sbjct: 28  MFHSSGEEQEKAVKDSLEMLKTIEEHALGKKRFFCGDKISLVDIAYGWIAQWLAVLEEVA 87

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESRAG 87
           G KLME   FPRL  W + F   P IKE+  G
Sbjct: 88  GIKLMEPQKFPRLHTWIKNFKDEPIIKENLPG 119

[Close]

BLAST of Cla021464 vs. TrEMBL
Match: D2X9T0_POPTR (Putative tau class glutathione transferase GSTU48 OS=Populus trichocarpa PE=2 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.8e-12
Identity = 41/92 (44.57%), Postives = 55/92 (59.78%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MF S  +EQ KA ++SLEML+ +EE  + +      +KI  VD+A+G   +WL V E+V 
Sbjct: 104 MFHSSGEEQEKAVKDSLEMLKTIEEHALGKKRFFCGDKISLVDIAYGWIAQWLAVLEEVA 163

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESRAG 87
           G KLME   FPRL  W + F   P IKE+  G
Sbjct: 164 GIKLMEPQKFPRLHTWIKNFKDEPIIKENLPG 195

[Close]

BLAST of Cla021464 vs. NCBI nr
Match: gi|778678023|ref|XP_004134391.2| (PREDICTED: probable glutathione S-transferase [Cucumis sativus])

HSP 1 Score: 121.7 bits (304), Expect = 7.6e-25
Identity = 67/91 (73.63%), Postives = 72/91 (79.12%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISREK------IGTVDLAFGQFVEWLGVFEKVI 60
           MF  G KEQ  AK ESLEMLRILEE+VI  EK      IG VDLAFG+FVEWLGVFE+VI
Sbjct: 105 MFYPGGKEQG-AKVESLEMLRILEEEVIGEEKFFGGEKIGMVDLAFGEFVEWLGVFEEVI 164

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESRA 86
           GEKL+ES SFPRLEAWSR FMA PAI E+RA
Sbjct: 165 GEKLLESGSFPRLEAWSRAFMAVPAISENRA 194

[Close]

BLAST of Cla021464 vs. NCBI nr
Match: gi|659075970|ref|XP_008438429.1| (PREDICTED: probable glutathione S-transferase [Cucumis melo])

HSP 1 Score: 120.6 bits (301), Expect = 1.7e-24
Identity = 65/90 (72.22%), Postives = 72/90 (80.00%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MF  G KEQ  AK+ESLEMLRILEE+VI        EK+G VDLAFGQFVEWLGVFE+V 
Sbjct: 110 MFYPGGKEQG-AKEESLEMLRILEEEVIGEGKFFGGEKMGIVDLAFGQFVEWLGVFEEVT 169

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKESR 85
           GEKL+ES SFPRLEAWSR FMA PAI+E+R
Sbjct: 170 GEKLLESGSFPRLEAWSRAFMAVPAIRENR 198

[Close]

BLAST of Cla021464 vs. NCBI nr
Match: gi|659075972|ref|XP_008438430.1| (PREDICTED: probable glutathione S-transferase [Cucumis melo])

HSP 1 Score: 86.3 bits (212), Expect = 3.5e-14
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MFCS  +E+ K K++SLEML+I+EE+ I        EKIG VDL +G F  WLGV E +I
Sbjct: 110 MFCSSGEEREKEKRKSLEMLQIVEEKAIDDRKFFGGEKIGMVDLVYGVFGYWLGVIEDLI 169

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKES 84
           G+KL+E+ SFPRL A  + F+  P I+E+
Sbjct: 170 GQKLIETPSFPRLHARIKNFLEDPIIREN 198

[Close]

BLAST of Cla021464 vs. NCBI nr
Match: gi|449432478|ref|XP_004134026.1| (PREDICTED: probable glutathione S-transferase [Cucumis sativus])

HSP 1 Score: 84.3 bits (207), Expect = 1.3e-13
Identity = 44/89 (49.44%), Postives = 61/89 (68.54%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           MFCS  +E+ K ++ESLEML+I+EE+ I        EKIG VDL +G F  WLGV E +I
Sbjct: 110 MFCSSGEEREKKRRESLEMLQIVEEKAIEDQKFFGGEKIGMVDLVYGVFGYWLGVIEDLI 169

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKES 84
           GEKL+E+ +FP+L A  + F+  P I+E+
Sbjct: 170 GEKLIETSTFPQLHARIKVFLQDPIIREN 198

[Close]

BLAST of Cla021464 vs. NCBI nr
Match: gi|1009174837|ref|XP_015868553.1| (PREDICTED: probable glutathione S-transferase [Ziziphus jujuba])

HSP 1 Score: 84.0 bits (206), Expect = 1.8e-13
Identity = 44/89 (49.44%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 1   MFCSGEKEQRKAKQESLEMLRILEEQVISR------EKIGTVDLAFGQFVEWLGVFEKVI 60
           +  SGE EQ KAK ESLE LR +EE  +        E+IG VD+AFG    WLGVFE+++
Sbjct: 112 LISSGE-EQEKAKNESLEFLRTIEEHGLGNKKFFGGEEIGIVDIAFGWMSLWLGVFEEIV 171

Query: 61  GEKLMESDSFPRLEAWSRGFMAAPAIKES 84
           G KL+E+  FPRL AW++ F   P IK++
Sbjct: 172 GVKLLEAHIFPRLYAWTKNFKEVPVIKQN 199

The following BLAST results are available for this feature:

BLAST of Cla021464 vs. Swiss-Prot


Match Name	E-value	Identity	Description
GSTU8_ARATH	7.2e-07	35.37	Glutathione S-transferase U8 OS=Arabidopsis thaliana GN=GSTU8 PE=2 SV=1	[more]

BLAST of Cla021464 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L4U8_CUCSA	5.3e-25	73.63	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133880 PE=3 SV=1	[more]
A0A0A0L6W9_CUCSA	9.4e-14	49.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G133890 PE=4 SV=1	[more]
D2X9T5_POPTR	1.8e-12	44.57	Putative tau class glutathione transferase GSTU53 OS=Populus trichocarpa PE=2 SV...	[more]
U5G1L0_POPTR	1.8e-12	44.57	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s07130g PE=4 SV=1	[more]
D2X9T0_POPTR	1.8e-12	44.57	Putative tau class glutathione transferase GSTU48 OS=Populus trichocarpa PE=2 SV...	[more]

BLAST of Cla021464 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778678023\|ref\|XP_004134391.2\|	7.6e-25	73.63	PREDICTED: probable glutathione S-transferase [Cucumis sativus]	[more]
gi\|659075970\|ref\|XP_008438429.1\|	1.7e-24	72.22	PREDICTED: probable glutathione S-transferase [Cucumis melo]	[more]
gi\|659075972\|ref\|XP_008438430.1\|	3.5e-14	50.56	PREDICTED: probable glutathione S-transferase [Cucumis melo]	[more]
gi\|449432478\|ref\|XP_004134026.1\|	1.3e-13	49.44	PREDICTED: probable glutathione S-transferase [Cucumis sativus]	[more]
gi\|1009174837\|ref\|XP_015868553.1\|	1.8e-13	49.44	PREDICTED: probable glutathione S-transferase [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR010987	Glutathione-S-Trfase_C-like

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla021464	Cla021464	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla021464	Cla021464.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla021464.1.cds1	Cla021464.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010987	Glutathione S-transferase, C-terminal-like	GENE3D	G3DSA:1.20.1050.10		coord: 5..83 score: 2.4
IPR010987	Glutathione S-transferase, C-terminal-like	unknown	SSF47616	GST C-terminal domain-like	coord: 5..84 score: 6.97
None	No IPR available	PANTHER	PTHR11260	GLUTATHIONE S-TRANSFERASE, GST, SUPERFAMILY, GST DOMAIN CONTAINING	coord: 6..83 score: 2.1
None	No IPR available	PANTHER	PTHR11260:SF227	SUBFAMILY NOT NAMED	coord: 6..83 score: 2.1