Cla021149 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla021149
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RNA polymerase II transcriptional coactivator KELP (AHRD V1 **-- KELP_ARATH); contains Interpro domain(s) IPR014876 DEK, C-terminal
Location	Chr5 : 802485 .. 802784 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACCAGGAGACCCAACGGAGAATCGAGGAAACCGTGATTGACGTATTGAAGAAATCGAACATGGAAGACACAACGGAGTATAAAGTTCGAGGCCAGGTCGAAGAGCGGCTCGGAATTGATCTCTCAAATAGACAATACAAGTTGCTGGTGAGAAACGTGGTCGAGAGCTTTTTACTTTCAATGTCGGAGCGGGTGTGTATGGGGAAAGAGGATGAGAATAAAGCGGTGGAGCAGGAGATAGTCCCGAAGAAGGAGATTAACGATGATGGCGACCTTGTGATTTGCCGGGTAAAGTAA

mRNA sequence

ATGGACCAGGAGACCCAACGGAGAATCGAGGAAACCGTGATTGACGTATTGAAGAAATCGAACATGGAAGACACAACGGAGTATAAAGTTCGAGGCCAGGTCGAAGAGCGGCTCGGAATTGATCTCTCAAATAGACAATACAAGTTGCTGGTGAGAAACGTGGTCGAGAGCTTTTTACTTTCAATGTCGGAGCGGGTGTGTATGGGGAAAGAGGATGAGAATAAAGCGGTGGAGCAGGAGATAGTCCCGAAGAAGGAGATTAACGATGATGGCGACCTTGTGATTTGCCGGGTAAAGTAA

Coding sequence (CDS)

ATGGACCAGGAGACCCAACGGAGAATCGAGGAAACCGTGATTGACGTATTGAAGAAATCGAACATGGAAGACACAACGGAGTATAAAGTTCGAGGCCAGGTCGAAGAGCGGCTCGGAATTGATCTCTCAAATAGACAATACAAGTTGCTGGTGAGAAACGTGGTCGAGAGCTTTTTACTTTCAATGTCGGAGCGGGTGTGTATGGGGAAAGAGGATGAGAATAAAGCGGTGGAGCAGGAGATAGTCCCGAAGAAGGAGATTAACGATGATGGCGACCTTGTGATTTGCCGGGTAAAGTAA

Protein sequence

MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLLSMSERVCMGKEDENKAVEQEIVPKKEINDDGDLVICRVK

Homology

[Close]

BLAST of Cla021149 vs. Swiss-Prot
Match: KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1)

HSP 1 Score: 81.3 bits (199), Expect = 6.7e-15
Identity = 47/106 (44.34%), Postives = 67/106 (63.21%), Query Frame = 1


Query: 1   MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLL 60
           M++ET+ +IE+TVI++L +S+M++ TE+KVR    E+L IDLS + +K  VR+VVE FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFL- 60

Query: 61  SMSERVCMGKEDENKAVEQEIVP--------KKEINDDGDLVICRV 99
              ER    +E EN  V +E            KE +DDGDL+ICR+
Sbjct: 61  -DEER---AREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRL 101

[Close]

BLAST of Cla021149 vs. TrEMBL
Match: A0A0A0L3U5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119510 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 5.7e-37
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 1


Query: 1   MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLL 60
           M+ ET+RRIEE VI+VLKKS+MEDTTE+KVR QVEERLGIDLSN+Q KLLVRNVVESFLL
Sbjct: 1   MNDETRRRIEENVIEVLKKSSMEDTTEFKVRSQVEERLGIDLSNKQCKLLVRNVVESFLL 60

Query: 61  SMSERVCMGKED--------ENKAVEQEIVPKKEINDDGDLVICRV 99
           SMSERVCMGKED        ENKAVEQ+IVPKKE NDDGDL+ICR+
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENKAVEQKIVPKKEFNDDGDLLICRL 106

[Close]

BLAST of Cla021149 vs. TrEMBL
Match: A0A0D2SBB6_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_007G109200 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 3.8e-17
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 1


Query: 1   MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLL 60
           M+QET+++IEETV D+L K++ME+ TE+KVR    ERLGIDLS+  ++  +R +VESFLL
Sbjct: 1   MEQETRQKIEETVKDILSKADMEEMTEFKVRVTASERLGIDLSDFSHRKFIRELVESFLL 60

Query: 61  SMSERVCMGKEDENKAVEQE----IVPKKEINDDGDLVICRV 99
           S  E    GK+   K VE+E    I  KKEI  DG  +IC++
Sbjct: 61  STVEENVDGKQPNTKPVEEEAKEAIKVKKEIEGDGGRIICKL 102

[Close]

BLAST of Cla021149 vs. TrEMBL
Match: A0A0B0MQS6_GOSAR (RNA polymerase II transcriptional coactivator KELP-like protein OS=Gossypium arboreum GN=F383_06784 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.5e-16
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 1


Query: 1   MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLL 60
           M+QET+++IEETV D+L K++ME+ TE+KVR    ERL IDLS+  ++  +R +VESFLL
Sbjct: 1   MEQETRQKIEETVKDILSKADMEEMTEFKVRVTASERLAIDLSDFSHRKFIRELVESFLL 60

Query: 61  SMSERVCMGKEDENKAVEQE----IVPKKEINDDGDLVICRV 99
           S  E    GK+   K VE+E    +  KKEI  DG  +IC++
Sbjct: 61  STVEENVDGKQPNTKPVEEEAKEAVKVKKEIEGDGGRIICKL 102

[Close]

BLAST of Cla021149 vs. TrEMBL
Match: V4TCL7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020119mg PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 1  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLL 60
          M+   + RI +TV++VLK S+ME+ TE+KVR +  ERLGIDLS+  +K  +R VVESFLL
Sbjct: 1  METVNEGRIRQTVMEVLKNSDMEEMTEFKVRVEASERLGIDLSDANHKRFIRGVVESFLL 60

Query: 61 SMSERVCMGKEDENKAVEQEIVPKKEINDDGDLVICRV 99
          S +E      E + +  EQ     K INDDGD +IC++
Sbjct: 61 STTESTDNRIEPDLEVEEQRAQIGKRINDDGDSIICKL 98

[Close]

BLAST of Cla021149 vs. TrEMBL
Match: A0A067H3B3_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013049mg PE=4 SV=1)

HSP 1 Score: 90.1 bits (222), Expect = 1.6e-15
Identity = 47/98 (47.96%), Postives = 65/98 (66.33%), Query Frame = 1


Query: 1  MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLL 60
          M+   + RI +TV++VLK S+ME+ TE+KVR +  ERLGIDLS+  +K  +R VVESFLL
Sbjct: 1  METVNEGRIRQTVMEVLKNSDMEEMTEFKVRVEASERLGIDLSDANHKRFIRGVVESFLL 60

Query: 61 SMSERVCMGKEDENKAVEQEIVPKKEINDDGDLVICRV 99
          S +E      E + +  EQ     K INDDGD +IC++
Sbjct: 61 STTESTDNRIEPDLEVEEQRAQIGKRINDDGDSIICKL 98

[Close]

BLAST of Cla021149 vs. NCBI nr
Match: gi|449433026|ref|XP_004134299.1| (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis sativus])

HSP 1 Score: 161.4 bits (407), Expect = 8.2e-37
Identity = 84/106 (79.25%), Postives = 93/106 (87.74%), Query Frame = 1


Query: 1   MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLL 60
           M+ ET+RRIEE VI+VLKKS+MEDTTE+KVR QVEERLGIDLSN+Q KLLVRNVVESFLL
Sbjct: 1   MNDETRRRIEENVIEVLKKSSMEDTTEFKVRSQVEERLGIDLSNKQCKLLVRNVVESFLL 60

Query: 61  SMSERVCMGKED--------ENKAVEQEIVPKKEINDDGDLVICRV 99
           SMSERVCMGKED        ENKAVEQ+IVPKKE NDDGDL+ICR+
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENKAVEQKIVPKKEFNDDGDLLICRL 106

[Close]

BLAST of Cla021149 vs. NCBI nr
Match: gi|659074945|ref|XP_008437880.1| (PREDICTED: uncharacterized protein LOC103483179 [Cucumis melo])

HSP 1 Score: 156.8 bits (395), Expect = 2.0e-35
Identity = 79/106 (74.53%), Postives = 93/106 (87.74%), Query Frame = 1


Query: 1   MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLL 60
           M+ ET+R+IEE VI+VLK+SN+EDTTE+KVR QVEER+GIDLSN+Q KLLVRNVVESFLL
Sbjct: 1   MNDETRRKIEENVIEVLKQSNIEDTTEFKVRSQVEERIGIDLSNKQCKLLVRNVVESFLL 60

Query: 61  SMSERVCMGKED--------ENKAVEQEIVPKKEINDDGDLVICRV 99
           SMSERVCMGKED        EN+AVEQ+I+PKKE NDDGDL+ICR+
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENRAVEQKIIPKKEFNDDGDLLICRL 106

[Close]

BLAST of Cla021149 vs. NCBI nr
Match: gi|823187249|ref|XP_012490128.1| (PREDICTED: copia protein [Gossypium raimondii])

HSP 1 Score: 95.5 bits (236), Expect = 5.5e-17
Identity = 51/102 (50.00%), Postives = 70/102 (68.63%), Query Frame = 1


Query: 1   MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLL 60
           M+QET+++IEETV D+L K++ME+ TE+KVR    ERLGIDLS+  ++  +R +VESFLL
Sbjct: 1   MEQETRQKIEETVKDILSKADMEEMTEFKVRVTASERLGIDLSDFSHRKFIRELVESFLL 60

Query: 61  SMSERVCMGKEDENKAVEQE----IVPKKEINDDGDLVICRV 99
           S  E    GK+   K VE+E    I  KKEI  DG  +IC++
Sbjct: 61  STVEENVDGKQPNTKPVEEEAKEAIKVKKEIEGDGGRIICKL 102

[Close]

BLAST of Cla021149 vs. NCBI nr
Match: gi|728821749|gb|KHG04478.1| (RNA polymerase II transcriptional coactivator KELP -like protein [Gossypium arboreum])

HSP 1 Score: 92.8 bits (229), Expect = 3.6e-16
Identity = 49/102 (48.04%), Postives = 69/102 (67.65%), Query Frame = 1


Query: 1   MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLL 60
           M+QET+++IEETV D+L K++ME+ TE+KVR    ERL IDLS+  ++  +R +VESFLL
Sbjct: 1   MEQETRQKIEETVKDILSKADMEEMTEFKVRVTASERLAIDLSDFSHRKFIRELVESFLL 60

Query: 61  SMSERVCMGKEDENKAVEQE----IVPKKEINDDGDLVICRV 99
           S  E    GK+   K VE+E    +  KKEI  DG  +IC++
Sbjct: 61  STVEENVDGKQPNTKPVEEEAKEAVKVKKEIEGDGGRIICKL 102

[Close]

BLAST of Cla021149 vs. NCBI nr
Match: gi|802694537|ref|XP_012083199.1| (PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas])

HSP 1 Score: 92.0 bits (227), Expect = 6.1e-16
Identity = 53/108 (49.07%), Postives = 72/108 (66.67%), Query Frame = 1


Query: 1   MDQETQRRIEETVIDVLKKSNMEDTTEYKVRGQVEERLGIDLSNRQYKLLVRNVVESFLL 60
           M+ E Q +IEETV+D+LK ++M+D TE+KVR    ERLGIDLS+ Q K  +R VVESFLL
Sbjct: 1   MESEIQLKIEETVLDILKNADMDDMTEFKVRVTTSERLGIDLSDIQRKRFIRGVVESFLL 60

Query: 61  S-MSERVCMGKE------DENKAV---EQEIVPKKEINDDGDLVICRV 99
           S M      GKE      +EN+ +   E E +PKKE + DG+ +IC++
Sbjct: 61  STMEVSGEEGKEADTNFREENQGMARKEHETIPKKEFDSDGNRIICKL 108

The following BLAST results are available for this feature:

BLAST of Cla021149 vs. Swiss-Prot


Match Name	E-value	Identity	Description
KELP_ARATH	6.7e-15	44.34	RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KE...	[more]

BLAST of Cla021149 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3U5_CUCSA	5.7e-37	79.25	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G119510 PE=4 SV=1	[more]
A0A0D2SBB6_GOSRA	3.8e-17	50.00	Uncharacterized protein OS=Gossypium raimondii GN=B456_007G109200 PE=4 SV=1	[more]
A0A0B0MQS6_GOSAR	2.5e-16	48.04	RNA polymerase II transcriptional coactivator KELP-like protein OS=Gossypium arb...	[more]
V4TCL7_9ROSI	1.6e-15	47.96	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020119mg PE=4 SV=1	[more]
A0A067H3B3_CITSI	1.6e-15	47.96	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g013049mg PE=4 SV=1	[more]

BLAST of Cla021149 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449433026\|ref\|XP_004134299.1\|	8.2e-37	79.25	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis ...	[more]
gi\|659074945\|ref\|XP_008437880.1\|	2.0e-35	74.53	PREDICTED: uncharacterized protein LOC103483179 [Cucumis melo]	[more]
gi\|823187249\|ref\|XP_012490128.1\|	5.5e-17	50.00	PREDICTED: copia protein [Gossypium raimondii]	[more]
gi\|728821749\|gb\|KHG04478.1\|	3.6e-16	48.04	RNA polymerase II transcriptional coactivator KELP -like protein [Gossypium arbo...	[more]
gi\|802694537\|ref\|XP_012083199.1\|	6.1e-16	49.07	PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009057	Homeobox-like_sf
IPR014876	DEK_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003713	transcription coactivator activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla021149	Cla021149.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009057	Homeodomain-like	GENE3D	G3DSA:1.10.10.60		coord: 4..62 score: 2.4
IPR014876	DEK, C-terminal	PFAM	PF08766	DEK_C	coord: 5..59 score: 8.1
None	No IPR available	PANTHER	PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	coord: 1..97 score: 7.4
None	No IPR available	PANTHER	PTHR13215:SF6	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP	coord: 1..97 score: 7.4
None	No IPR available	unknown	SSF109715	DEK C-terminal domain	coord: 5..58 score: 7.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla021149	Cla97C05G080900	Watermelon (97103) v2	wmwmbB206
Cla021149	Csa3G119510	Cucumber (Chinese Long) v2	cuwmB233
Cla021149	Csa4G052710	Cucumber (Chinese Long) v2	cuwmB325
Cla021149	MELO3C016275	Melon (DHL92) v3.5.1	mewmB526
Cla021149	CSPI03G07870	Wild cucumber (PI 183967)	cpiwmB231
Cla021149	CSPI04G06520	Wild cucumber (PI 183967)	cpiwmB329
Cla021149	CmaCh06G010140	Cucurbita maxima (Rimu)	cmawmB799
Cla021149	CmaCh00G002960	Cucurbita maxima (Rimu)	cmawmB004
Cla021149	CmoCh06G010340	Cucurbita moschata (Rifu)	cmowmB793
Cla021149	Lsi05G021290	Bottle gourd (USVL1VR-Ls)	lsiwmB365
Cla021149	Cp4.1LG08g00830	Cucurbita pepo (Zucchini)	cpewmB845
Cla021149	CsGy4G006450	Cucumber (Gy14) v2	cgybwmB300
Cla021149	CsGy3G008010	Cucumber (Gy14) v2	cgybwmB217
Cla021149	MELO3C016275.2	Melon (DHL92) v3.6.1	medwmB511
Cla021149	MELO3C006017.2	Melon (DHL92) v3.6.1	medwmB447
Cla021149	Carg20898	Silver-seed gourd	carwmB0992
Cla021149	CsaV3_3G007990	Cucumber (Chinese Long) v3	cucwmB239
Cla021149	CsaV3_4G006740	Cucumber (Chinese Long) v3	cucwmB338
Cla021149	Bhi01G000361	Wax gourd	wgowmB212

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla021149	Cucumber (Gy14) v2	cgybwmB373
Cla021149	Melon (DHL92) v3.6.1	medwmB018
Cla021149	Silver-seed gourd	carwmB0122
Cla021149	Cucumber (Chinese Long) v3	cucwmB423
Cla021149	Watermelon (97103) v2	wmwmbB187
Cla021149	Watermelon (97103) v2	wmwmbB212
Cla021149	Wax gourd	wgowmB071
Cla021149	Wax gourd	wgowmB221
Cla021149	Watermelon (97103) v1	wmwmB118
Cla021149	Watermelon (97103) v1	wmwmB119
Cla021149	Cucumber (Gy14) v1	cgywmB398
Cla021149	Cucumber (Gy14) v1	cgywmB479
Cla021149	Cucurbita maxima (Rimu)	cmawmB242
Cla021149	Cucurbita moschata (Rifu)	cmowmB231
Cla021149	Melon (DHL92) v3.5.1	mewmB022
Cla021149	Melon (DHL92) v3.5.1	mewmB461
Cla021149	Melon (DHL92) v3.5.1	mewmB470
Cla021149	Watermelon (Charleston Gray)	wcgwmB130
Cla021149	Watermelon (Charleston Gray)	wcgwmB286
Cla021149	Watermelon (Charleston Gray)	wcgwmB291
Cla021149	Cucumber (Chinese Long) v2	cuwmB397
Cla021149	Cucurbita pepo (Zucchini)	cpewmB613
Cla021149	Cucurbita pepo (Zucchini)	cpewmB704
Cla021149	Bottle gourd (USVL1VR-Ls)	lsiwmB018
Cla021149	Bottle gourd (USVL1VR-Ls)	lsiwmB372