Carg20898 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg20898
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	RNA polymerase II transcriptional coactivator KELP-like protein
Location	Cucurbita_argyrosperma_scaffold_141 : 227207 .. 228484 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTCTCCAACCGCCGTCGAAAGCCAAAGCGAACGGAGTTCTCTACAAATTACAGCACTTCCAATCGGAGACGGCCGGTTTCATTTTTCCAGCCGACTGAACTTCACCAAGAAACGGCGGGAACAGTTTTCCATTTCTCTTTCAACTCCGGTATTTTCTTGTTTTCAAGAAACATGGACAATGAAACCCGACGGAGAATCGAGGAAACGGTGATTGACTTATTGAAGATATCGAACATGGAAGAGATGACGGAGTACAAAATTCGAGCCGAGGCCGAAAAACGGCTCGGAATGGATCTCTCCGATATTCAATGCAAGTGCCTGGTGAGGGACGTGGTCGAGGACTTTTTACATTCATTTACGGAACGTGATGATAAGGGAAAAGAGGGAGAACCAGGGCCTAGTGATCGTTACGAGAATAAAGCGACGGAGCAGGAGATAGTCCGGAAGAAGGAGATTAACGCTGATGTTGACCGTGTGATTTGCCAGGTAAAGCCTTGCCCTTCTTGATTCTTGAGAACGTGAATTTGAAACCGGAAAAATTGGGATTTTGCGTATATCTTGTGAACTTAGTGAATTGAACTTCAGTGCAATGGAGCTTGTTGACCTTCTTAGAATGCTTCCGAAGCTGTATATGTTCCTATGGCTTAATTGTTATAATTCTTTGCTCGTGATCATTATACTATAGTCTTTTGTTACTGAACTGCACCAAAAGGTTAGATTGTGGATGAAATTCCGGTGTACATTCCCTGGCATTTGTGCATTATGATGTAAATTATTGAATCCTCTATATTTATGATTCTAATAACTAAAGAAATGTACATTTAGACAAGATCTTTACAGCACTGCATCCTTTCAAAATTTTAGTTTTTGTTTTTAGAATTGGACAAAAAAAATTCAAATGTTTATCCAACCTAATTAAAAATTATAGTAAAGAAATTATGTATAAATTTCAAAAACAGAAAGGTAAAGTAAAATTGTTATCAAATAGAGACATAGTTGTTAAAATTGTCCATTACAAATTTTACTCTGTATGAAACATGATCCACATATAATAACCAGTCTGCAATATTATGATTTAGTAGCTAATGATTTTCGGGTTTCTTTCAGCTATCTAATAACAGGAATGTGACAGTTCATGAATTTAAAGGGAACGCTCTGGTATCAATTAGGCAGTATTATGAAAAAGATGGAAAACAGCTTCCTGGTATTAAAGGTGGGCACTATGCATTGGTCTGTTCATTTCCTCTTATGGTGAATCTTCTTATTTTGCCCTGA

mRNA sequence

AATTTCTCCAACCGCCGTCGAAAGCCAAAGCGAACGGAGTTCTCTACAAATTACAGCACTTCCAATCGGAGACGGCCGGTTTCATTTTTCCAGCCGACTGAACTTCACCAAGAAACGGCGGGAACAGTTTTCCATTTCTCTTTCAACTCCGGTATTTTCTTGTTTTCAAGAAACATGGACAATGAAACCCGACGGAGAATCGAGGAAACGGTGATTGACTTATTGAAGATATCGAACATGGAAGAGATGACGGAGTACAAAATTCGAGCCGAGGCCGAAAAACGGCTCGGAATGGATCTCTCCGATATTCAATGCAAGTGCCTGGTGAGGGACGTGGTCGAGGACTTTTTACATTCATTTACGGAACGTGATGATAAGGGAAAAGAGGGAGAACCAGGGCCTAGTGATCGTTACGAGAATAAAGCGACGGAGCAGGAGATAGTCCGGAAGAAGGAGATTAACGCTGATGTTGACCGTGTGATTTGCCAGCTATCTAATAACAGGAATGTGACAGTTCATGAATTTAAAGGGAACGCTCTGGTATCAATTAGGCAGTATTATGAAAAAGATGGAAAACAGCTTCCTGGTATTAAAGGTGGGCACTATGCATTGGTCTGTTCATTTCCTCTTATGGTGAATCTTCTTATTTTGCCCTGA

Coding sequence (CDS)

AATTTCTCCAACCGCCGTCGAAAGCCAAAGCGAACGGAGTTCTCTACAAATTACAGCACTTCCAATCGGAGACGGCCGGTTTCATTTTTCCAGCCGACTGAACTTCACCAAGAAACGGCGGGAACAGTTTTCCATTTCTCTTTCAACTCCGGTATTTTCTTGTTTTCAAGAAACATGGACAATGAAACCCGACGGAGAATCGAGGAAACGGTGATTGACTTATTGAAGATATCGAACATGGAAGAGATGACGGAGTACAAAATTCGAGCCGAGGCCGAAAAACGGCTCGGAATGGATCTCTCCGATATTCAATGCAAGTGCCTGGTGAGGGACGTGGTCGAGGACTTTTTACATTCATTTACGGAACGTGATGATAAGGGAAAAGAGGGAGAACCAGGGCCTAGTGATCGTTACGAGAATAAAGCGACGGAGCAGGAGATAGTCCGGAAGAAGGAGATTAACGCTGATGTTGACCGTGTGATTTGCCAGCTATCTAATAACAGGAATGTGACAGTTCATGAATTTAAAGGGAACGCTCTGGTATCAATTAGGCAGTATTATGAAAAAGATGGAAAACAGCTTCCTGGTATTAAAGGTGGGCACTATGCATTGGTCTGTTCATTTCCTCTTATGGTGAATCTTCTTATTTTGCCCTGA

Protein sequence

NFSNRRRKPKRTEFSTNYSTSNRRRPVSFFQPTELHQETAGTVFHFSFNSGIFLFSRNMDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLHSFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGNALVSIRQYYEKDGKQLPGIKGGHYALVCSFPLMVNLLILP

Homology

[Close]

BLAST of Carg20898 vs. NCBI nr
Match: XP_022945450.1 (uncharacterized protein LOC111449676 [Cucurbita moschata])

HSP 1 Score: 280.8 bits (717), Expect = 4.0e-72
Identity = 140/141 (99.29%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           MDNETRRRI+ETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH
Sbjct: 1   MDNETRRRIKETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 178
           SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN
Sbjct: 61  SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 120

Query: 179 ALVSIRQYYEKDGKQLPGIKG 200
           ALVSIRQYYEKDGKQLPGIKG
Sbjct: 121 ALVSIRQYYEKDGKQLPGIKG 141

[Close]

BLAST of Carg20898 vs. NCBI nr
Match: XP_023539029.1 (uncharacterized protein LOC111799782 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 278.9 bits (712), Expect = 1.5e-71
Identity = 139/141 (98.58%), Postives = 141/141 (100.00%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEK+LGMDLSDIQCKCLVR+VVEDFLH
Sbjct: 1   MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKQLGMDLSDIQCKCLVRNVVEDFLH 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 178
           SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN
Sbjct: 61  SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 120

Query: 179 ALVSIRQYYEKDGKQLPGIKG 200
           ALVSIRQYYEKDGKQLPGIKG
Sbjct: 121 ALVSIRQYYEKDGKQLPGIKG 141

[Close]

BLAST of Carg20898 vs. NCBI nr
Match: XP_004134299.1 (PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis sativus] >KGN56418.1 hypothetical protein Csa_3G119510 [Cucumis sativus])

HSP 1 Score: 188.7 bits (478), Expect = 2.0e-44
Identity = 94/141 (66.67%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           M++ETRRRIEE VI++LK S+ME+ TE+K+R++ E+RLG+DLS+ QCK LVR+VVE FL 
Sbjct: 1   MNDETRRRIEENVIEVLKKSSMEDTTEFKVRSQVEERLGIDLSNKQCKLLVRNVVESFLL 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 178
           S +ER   GKE EPGPS RYENKA EQ+IV KKE N D D +IC+LSNNR+VT+H+FKG 
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENKAVEQKIVPKKEFNDDGDLLICRLSNNRSVTIHKFKGA 120

Query: 179 ALVSIRQYYEKDGKQLPGIKG 200
            +VS+RQYYEKDGKQLP +KG
Sbjct: 121 PMVSVRQYYEKDGKQLPTLKG 141

[Close]

BLAST of Carg20898 vs. NCBI nr
Match: XP_008437880.1 (PREDICTED: uncharacterized protein LOC103483179 [Cucumis melo])

HSP 1 Score: 184.5 bits (467), Expect = 3.9e-43
Identity = 90/141 (63.83%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           M++ETRR+IEE VI++LK SN+E+ TE+K+R++ E+R+G+DLS+ QCK LVR+VVE FL 
Sbjct: 1   MNDETRRKIEENVIEVLKQSNIEDTTEFKVRSQVEERIGIDLSNKQCKLLVRNVVESFLL 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 178
           S +ER   GKE EPGPS RYEN+A EQ+I+ KKE N D D +IC+LSNNR+VT+H+FKG 
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENRAVEQKIIPKKEFNDDGDLLICRLSNNRSVTIHKFKGE 120

Query: 179 ALVSIRQYYEKDGKQLPGIKG 200
            +VSIRQYY KDGKQLP +KG
Sbjct: 121 RMVSIRQYYAKDGKQLPTLKG 141

[Close]

BLAST of Carg20898 vs. NCBI nr
Match: EOX95686.1 (Zinc knuckle family protein, putative isoform 1 [Theobroma cacao])

HSP 1 Score: 131.3 bits (329), Expect = 3.9e-27
Identity = 71/143 (49.65%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           M+ ETR++IEETV ++L  ++MEEMTE+K+R  A +RLG+DLSD   K  VR+V+E FL 
Sbjct: 1   MEKETRQKIEETVREILSKADMEEMTEFKVRVAASERLGIDLSDFNHKKFVREVIESFLL 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQE--IVRKKEINADVDRVICQLSNNRNVTVHEFK 178
           S  E        E G  +   +K  E+E  I  KKEI+ D DR+IC+L++ RNV VHEF+
Sbjct: 61  STVE--------ENGDVEELNSKLREEEAKIKIKKEIDGDGDRLICKLADKRNVVVHEFR 120

Query: 179 GNALVSIRQYYEKDGKQLPGIKG 200
           G   VSIR++Y KDGK+LP  +G
Sbjct: 121 GKTYVSIREFYVKDGKELPSARG 135

[Close]

BLAST of Carg20898 vs. TAIR10
Match: AT4G10920.1 (transcriptional coactivator p15 (PC4) family protein (KELP))

HSP 1 Score: 114.8 bits (286), Expect = 6.8e-26
Identity = 62/141 (43.97%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           M+ ET+ +IE+TVI++L  S+M+E+TE+K+R  A ++L +DLS+   K  VR VVE FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 178
                +++ +E E    ++ E    +      KE + D D +IC+LS+ R VT+ EFKG 
Sbjct: 61  -----EERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGK 120

Query: 179 ALVSIRQYYEKDGKQLPGIKG 200
           +LVSIR+YY+KDGK+LP  KG
Sbjct: 121 SLVSIREYYKKDGKELPTSKG 136

[Close]

BLAST of Carg20898 vs. TAIR10
Match: AT4G00980.1 (zinc knuckle (CCHC-type) family protein)

HSP 1 Score: 71.6 bits (174), Expect = 6.6e-13
Identity = 48/138 (34.78%), Postives = 72/138 (52.17%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           M+    ++IEETV  +L  S+M++MTE+K+R +A  +LG+DLS    K LVRDV+E FL 
Sbjct: 12  MEIVATQKIEETVKSILSESDMDQMTEFKLRLDASAKLGIDLSGTNHKKLVRDVLEVFLL 71

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 178
           S          GE    +       E   V    +  + +R IC+LS  +N TV  ++G 
Sbjct: 72  S--------TPGEALVPETVAPAKNETVSVAAASVGGEDERFICKLSEKQNATVQRYRGQ 131

Query: 179 ALVSIRQYYEKDGKQLPG 197
             +SI    ++ GK   G
Sbjct: 132 PFLSIGS--QEHGKAFRG 139

[Close]

BLAST of Carg20898 vs. TAIR10
Match: AT1G64490.1 (DEK, chromatin associated protein)

HSP 1 Score: 51.2 bits (121), Expect = 9.2e-07
Identity = 25/59 (42.37%), Postives = 40/59 (67.80%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFL 118
           +DN+ +++I+ETV  +LK S++ E+TE K R EA   L +DLS    K +VR+ V+ F+
Sbjct: 11  IDNDLKKKIKETVKKILKRSSLLEITEIKAREEASSELNLDLSRDPYKIIVREAVDSFI 69

[Close]

BLAST of Carg20898 vs. TAIR10
Match: AT5G42060.1 (DEK, chromatin associated protein)

HSP 1 Score: 50.1 bits (118), Expect = 2.1e-06
Identity = 25/59 (42.37%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFL 118
           +D + RR+I++TV  +L+ SN+ ++TE K R EA  +L +DLS    K +V++ VE+FL
Sbjct: 11  IDKDLRRKIKKTVKKILESSNLYKITEIKAREEASLKLDLDLSQDPYKVIVKEEVENFL 69

[Close]

BLAST of Carg20898 vs. TAIR10
Match: AT5G09250.1 (ssDNA-binding transcriptional regulator)

HSP 1 Score: 48.1 bits (113), Expect = 7.8e-06
Identity = 26/80 (32.50%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 121 TERDDKGKEGEPGPSDRYENKATEQEIVR-KKEINADVDRVICQLSNNRNVTVHEFKGNA 180
           + R  +  E      D  E  A  +++ +   + +   D V+C +S NR V+V  + G  
Sbjct: 2   SSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKI 61

Query: 181 LVSIRQYYEKDGKQLPGIKG 200
            + IR++Y KDGK LPG KG
Sbjct: 62  WIDIREFYVKDGKTLPGKKG 81

[Close]

BLAST of Carg20898 vs. Swiss-Prot
Match: sp|O65155|KELP_ARATH (RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=3702 GN=KELP PE=1 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.2e-24
Identity = 62/141 (43.97%), Postives = 93/141 (65.96%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           M+ ET+ +IE+TVI++L  S+M+E+TE+K+R  A ++L +DLS+   K  VR VVE FL 
Sbjct: 1   MEKETKEKIEKTVIEILSESDMKEITEFKVRKLASEKLAIDLSEKSHKAFVRSVVEKFLD 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 178
                +++ +E E    ++ E    +      KE + D D +IC+LS+ R VT+ EFKG 
Sbjct: 61  -----EERAREYENSQVNKEEEDGDKDCGKGNKEFDDDGDLIICRLSDKRRVTIQEFKGK 120

Query: 179 ALVSIRQYYEKDGKQLPGIKG 200
           +LVSIR+YY+KDGK+LP  KG
Sbjct: 121 SLVSIREYYKKDGKELPTSKG 136

[Close]

BLAST of Carg20898 vs. Swiss-Prot
Match: sp|Q9FHX8|MDA3_ARATH (Mediator-associated protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g42060 PE=1 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 3.7e-05
Identity = 25/59 (42.37%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFL 118
           +D + RR+I++TV  +L+ SN+ ++TE K R EA  +L +DLS    K +V++ VE+FL
Sbjct: 11  IDKDLRRKIKKTVKKILESSNLYKITEIKAREEASLKLDLDLSQDPYKVIVKEEVENFL 69

[Close]

BLAST of Carg20898 vs. Swiss-Prot
Match: sp|O65154|KIWI_ARATH (RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=3702 GN=KIWI PE=1 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.4e-04
Identity = 26/80 (32.50%), Postives = 41/80 (51.25%), Query Frame = 0


Query: 121 TERDDKGKEGEPGPSDRYENKATEQEIVR-KKEINADVDRVICQLSNNRNVTVHEFKGNA 180
           + R  +  E      D  E  A  +++ +   + +   D V+C +S NR V+V  + G  
Sbjct: 2   SSRGKRKDEDVRASDDESETHAPAKKVAKPADDSDQSDDIVVCNISKNRRVSVRNWNGKI 61

Query: 181 LVSIRQYYEKDGKQLPGIKG 200
            + IR++Y KDGK LPG KG
Sbjct: 62  WIDIREFYVKDGKTLPGKKG 81

[Close]

BLAST of Carg20898 vs. TrEMBL
Match: tr|A0A0A0L3U5|A0A0A0L3U5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119510 PE=4 SV=1)

HSP 1 Score: 188.7 bits (478), Expect = 1.4e-44
Identity = 94/141 (66.67%), Postives = 118/141 (83.69%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           M++ETRRRIEE VI++LK S+ME+ TE+K+R++ E+RLG+DLS+ QCK LVR+VVE FL 
Sbjct: 1   MNDETRRRIEENVIEVLKKSSMEDTTEFKVRSQVEERLGIDLSNKQCKLLVRNVVESFLL 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 178
           S +ER   GKE EPGPS RYENKA EQ+IV KKE N D D +IC+LSNNR+VT+H+FKG 
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENKAVEQKIVPKKEFNDDGDLLICRLSNNRSVTIHKFKGA 120

Query: 179 ALVSIRQYYEKDGKQLPGIKG 200
            +VS+RQYYEKDGKQLP +KG
Sbjct: 121 PMVSVRQYYEKDGKQLPTLKG 141

[Close]

BLAST of Carg20898 vs. TrEMBL
Match: tr|A0A1S3AV18|A0A1S3AV18_CUCME (uncharacterized protein LOC103483179 OS=Cucumis melo OX=3656 GN=LOC103483179 PE=4 SV=1)

HSP 1 Score: 184.5 bits (467), Expect = 2.6e-43
Identity = 90/141 (63.83%), Postives = 117/141 (82.98%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           M++ETRR+IEE VI++LK SN+E+ TE+K+R++ E+R+G+DLS+ QCK LVR+VVE FL 
Sbjct: 1   MNDETRRKIEENVIEVLKQSNIEDTTEFKVRSQVEERIGIDLSNKQCKLLVRNVVESFLL 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 178
           S +ER   GKE EPGPS RYEN+A EQ+I+ KKE N D D +IC+LSNNR+VT+H+FKG 
Sbjct: 61  SMSERVCMGKEDEPGPSVRYENRAVEQKIIPKKEFNDDGDLLICRLSNNRSVTIHKFKGE 120

Query: 179 ALVSIRQYYEKDGKQLPGIKG 200
            +VSIRQYY KDGKQLP +KG
Sbjct: 121 RMVSIRQYYAKDGKQLPTLKG 141

[Close]

BLAST of Carg20898 vs. TrEMBL
Match: tr|A0A061DUH2|A0A061DUH2_THECC (Zinc knuckle family protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_005132 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.6e-27
Identity = 71/143 (49.65%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           M+ ETR++IEETV ++L  ++MEEMTE+K+R  A +RLG+DLSD   K  VR+V+E FL 
Sbjct: 1   MEKETRQKIEETVREILSKADMEEMTEFKVRVAASERLGIDLSDFNHKKFVREVIESFLL 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQE--IVRKKEINADVDRVICQLSNNRNVTVHEFK 178
           S  E        E G  +   +K  E+E  I  KKEI+ D DR+IC+L++ RNV VHEF+
Sbjct: 61  STVE--------ENGDVEELNSKLREEEAKIKIKKEIDGDGDRLICKLADKRNVVVHEFR 120

Query: 179 GNALVSIRQYYEKDGKQLPGIKG 200
           G   VSIR++Y KDGK+LP  +G
Sbjct: 121 GKTYVSIREFYVKDGKELPSARG 135

[Close]

BLAST of Carg20898 vs. TrEMBL
Match: tr|A0A061DTK4|A0A061DTK4_THECC (Zinc knuckle family protein, putative isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_005132 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 2.6e-27
Identity = 71/143 (49.65%), Postives = 97/143 (67.83%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           M+ ETR++IEETV ++L  ++MEEMTE+K+R  A +RLG+DLSD   K  VR+V+E FL 
Sbjct: 1   MEKETRQKIEETVREILSKADMEEMTEFKVRVAASERLGIDLSDFNHKKFVREVIESFLL 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQE--IVRKKEINADVDRVICQLSNNRNVTVHEFK 178
           S  E        E G  +   +K  E+E  I  KKEI+ D DR+IC+L++ RNV VHEF+
Sbjct: 61  STVE--------ENGDVEELNSKLREEEAKIKIKKEIDGDGDRLICKLADKRNVVVHEFR 120

Query: 179 GNALVSIRQYYEKDGKQLPGIKG 200
           G   VSIR++Y KDGK+LP  +G
Sbjct: 121 GKTYVSIREFYVKDGKELPSARG 135

[Close]

BLAST of Carg20898 vs. TrEMBL
Match: tr|A0A1R3H1Q7|A0A1R3H1Q7_COCAP (Zinc finger, CCHC-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_21893 PE=4 SV=1)

HSP 1 Score: 129.0 bits (323), Expect = 1.3e-26
Identity = 69/141 (48.94%), Postives = 95/141 (67.38%), Query Frame = 0


Query: 59  MDNETRRRIEETVIDLLKISNMEEMTEYKIRAEAEKRLGMDLSDIQCKCLVRDVVEDFLH 118
           M+ ETR++IEETV D+L  ++MEEMTE+K+R  A +RLG+DL D   K  +R+VVE FL 
Sbjct: 1   MEQETRQKIEETVKDILSKADMEEMTEFKVRVAASERLGIDLFDFSYKKFIREVVESFLL 60

Query: 119 SFTERDDKGKEGEPGPSDRYENKATEQEIVRKKEINADVDRVICQLSNNRNVTVHEFKGN 178
           +  E +  GK  EPG     E K T   +  KKEI  + +R+IC+L + RNV VH+F+G 
Sbjct: 61  ASIEENGDGK--EPGTELPEEPKET---VKVKKEIEGERERLICKLEDKRNVVVHDFRGR 120

Query: 179 ALVSIRQYYEKDGKQLPGIKG 200
             VSIR++Y KDGK+LP  +G
Sbjct: 121 TYVSIREFYVKDGKELPSARG 136

The following BLAST results are available for this feature:

BLAST of Carg20898 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022945450.1	4.0e-72	99.29	uncharacterized protein LOC111449676 [Cucurbita moschata]	[more]
XP_023539029.1	1.5e-71	98.58	uncharacterized protein LOC111799782 [Cucurbita pepo subsp. pepo]	[more]
XP_004134299.1	2.0e-44	66.67	PREDICTED: retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cucumis ...	[more]
XP_008437880.1	3.9e-43	63.83	PREDICTED: uncharacterized protein LOC103483179 [Cucumis melo]	[more]
EOX95686.1	3.9e-27	49.65	Zinc knuckle family protein, putative isoform 1 [Theobroma cacao]	[more]

BLAST of Carg20898 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G10920.1	6.8e-26	43.97	transcriptional coactivator p15 (PC4) family protein (KELP)	[more]
AT4G00980.1	6.6e-13	34.78	zinc knuckle (CCHC-type) family protein	[more]
AT1G64490.1	9.2e-07	42.37	DEK, chromatin associated protein	[more]
AT5G42060.1	2.1e-06	42.37	DEK, chromatin associated protein	[more]
AT5G09250.1	7.8e-06	32.50	ssDNA-binding transcriptional regulator	[more]

BLAST of Carg20898 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|O65155\|KELP_ARATH	1.2e-24	43.97	RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana OX=37...	[more]
sp\|Q9FHX8\|MDA3_ARATH	3.7e-05	42.37	Mediator-associated protein 3 OS=Arabidopsis thaliana OX=3702 GN=At5g42060 PE=1 ...	[more]
sp\|O65154\|KIWI_ARATH	1.4e-04	32.50	RNA polymerase II transcriptional coactivator KIWI OS=Arabidopsis thaliana OX=37...	[more]

BLAST of Carg20898 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0L3U5\|A0A0A0L3U5_CUCSA	1.4e-44	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G119510 PE=4 SV=1	[more]
tr\|A0A1S3AV18\|A0A1S3AV18_CUCME	2.6e-43	63.83	uncharacterized protein LOC103483179 OS=Cucumis melo OX=3656 GN=LOC103483179 PE=...	[more]
tr\|A0A061DUH2\|A0A061DUH2_THECC	2.6e-27	49.65	Zinc knuckle family protein, putative isoform 1 OS=Theobroma cacao OX=3641 GN=TC...	[more]
tr\|A0A061DTK4\|A0A061DTK4_THECC	2.6e-27	49.65	Zinc knuckle family protein, putative isoform 2 OS=Theobroma cacao OX=3641 GN=TC...	[more]
tr\|A0A1R3H1Q7\|A0A1R3H1Q7_COCAP	1.3e-26	48.94	Zinc finger, CCHC-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_21893 PE=4 S...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **INTERPRO**
Term	Definition
IPR009044	ssDNA-bd_transcriptional_reg
IPR003173	PC4
IPR014876	DEK_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg20898-RA	Carg20898-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR014876	DEK, C-terminal	PFAM	PF08766	DEK_C	coord: 63..117 e-value: 1.8E-9 score: 37.2
IPR003173	Transcriptional coactivator p15 (PC4)	PFAM	PF02229	PC4	coord: 162..199 e-value: 8.8E-15 score: 54.0
IPR009044	ssDNA-binding transcriptional regulator	GENE3D	G3DSA:2.30.31.10		coord: 151..201 e-value: 1.1E-14 score: 55.5
IPR009044	ssDNA-binding transcriptional regulator	SUPERFAMILY	SSF54447	ssDNA-binding transcriptional regulator domain	coord: 161..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..20
None	No IPR available	PANTHER	PTHR13215:SF6	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR KELP	coord: 59..199
None	No IPR available	PANTHER	PTHR13215	RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR	coord: 59..199

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg20898	Cla021149	Watermelon (97103) v1	carwmB0992
Carg20898	Csa3G119510	Cucumber (Chinese Long) v2	carcuB1007
Carg20898	CSPI03G07870	Wild cucumber (PI 183967)	carcpiB1031
Carg20898	CmaCh00G002960	Cucurbita maxima (Rimu)	carcmaB1370
Carg20898	CmaCh06G010140	Cucurbita maxima (Rimu)	carcmaB1377
Carg20898	CmoCh06G010340	Cucurbita moschata (Rifu)	carcmoB1332
Carg20898	Lsi05G021290	Bottle gourd (USVL1VR-Ls)	carlsiB907
Carg20898	Cp4.1LG08g00830	Cucurbita pepo (Zucchini)	carcpeB1380
Carg20898	CsGy3G008010	Cucumber (Gy14) v2	carcgybB0980
Carg20898	MELO3C006017.2	Melon (DHL92) v3.6.1	carmedB0978
Carg20898	CsaV3_3G007990	Cucumber (Chinese Long) v3	carcucB1037
Carg20898	Cla97C05G080900	Watermelon (97103) v2	carwmbB1047
Carg20898	Bhi01G000361	Wax gourd	carwgoB1162

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg20898	Silver-seed gourd	carcarB146
Carg20898	Cucumber (Gy14) v1	carcgyB1110
Carg20898	Cucurbita maxima (Rimu)	carcmaB1371
Carg20898	Cucurbita maxima (Rimu)	carcmaB1373
Carg20898	Cucurbita moschata (Rifu)	carcmoB1330
Carg20898	Cucurbita pepo (Zucchini)	carcpeB1379
Carg20898	Melon (DHL92) v3.5.1	carmeB0968
Carg20898	Watermelon (Charleston Gray)	carwcgB0968
Carg20898	Watermelon (97103) v2	carwmbB1044