Cla020420 (gene) Watermelon (97103) v1

Overview
NameCla020420
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionAuxin responsive protein (AHRD V1 ***- B3U2A2_CUCSA); contains Interpro domain(s) IPR003311 AUX/IAA protein
LocationChr5 : 29980194 .. 29982442 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAATAATAATAATGAGTTGATTATGAACAACTCTGTTTATTGTGAAGGGAAAGGGGAAAATGGGATTATAGATTTGGGGTTGAGCCTAAGAACTTTGGAGCAGCCAGAAGTGGGAATAGAAGGAAGAGGGTACATGAATTGGGGAGGACAGGAGGATTACTATTGTTGTAGTAATGAGGAAGATGCAGAGGTTGTGCAGAGCAAACAACAGCAGAGGTGGGCTTATGTTAAAGTCAATATGGATGGTGTCATTGTTGGTAGGAAAGTTTGCATCTTTCAACATGCTACCTATTCCACTCTTGCCCTTCAGCTTGAAGACATGTTTGGTAACTTAATCTTTACATTTAATTTACTCTCTCACTCATTAAACTAGATTCGAATTGACTAAGTCTGCGATATTTGTCGATAGTTGAGCTGAGATTTATGCTAACTTTAATAGAATAGGAGCTACTAAGTTAAATTTTATTATTATGTAACTAATTTAGATGAAACTCAACTTCAAATGAATACTTTTAAGATTTATTGAAAGTAACATTTAATAGGAGTATAAAATTATACCTCTTTTTAATAAAGATTTTGTTGAAGAAATTGACGTAAAAGAAAAGAGAGACAATCACTTGAAAGAAAGAAACTTTTATTAAGAATATACAAAGATCGATACTTTTGGGAGAATACTTTTACGCTCTCTCAACATCACACTCACTCACTTGTCTTTATTTTTAGGTTTACTAACTTTATAGCTTTGTTTGGCTCCCACATAGAGCCACACCTCCTGTTTATAGACATGAGATCTTTGGAATCAAAGTAAAAGAATCTCTCTAGGTTTTTCTTGGATTCTACAAATATTTTAGATATTTCTTGGATTCGCCTAAAGAAAGCCTAAGATATTTCTAGATATTTTCTTTCGATATATTTATTTATAATCTTCTAGATAAATCTAGAGATATCTAGTATTTATACTTTAGCTATTTATGTTGATACTTCAAAATGTTTCTAGAATAGTTAGTGTTTCTTATATTTTAACATCTAGCTCAATCAATATAATATTATCTAGATTTGCATGATGATGGTTCCTTTTCTTTTTTTCTATTTTTTTTTAGTACAACAAATGGGATAAGAATATTTAAACATGCAAAGATTTCTAATAGCATCAACAAATGGGATGGGGCCTCTCTTTCTTGGAGCTTACTCTCTAAGTTTTTATTTAGGATTATAACAAAGAAAAGAACCAAAAGGACAAAGGCCCCATAATGTAGCATTCTTGTCCTTTTTTTTTTTTTTTTGAACATAATGAAATAATGAAAACGACACTTTATAATGAAGATCAAGATCCTTTAATTGTTTGATTCATACCCAATAATTAATTAGCACTCCAAAAGATGTTCTAGAAAATTGTTGCAATTAATATGGCGATCTCATGTCTAATGATACGACCATTCTTTCTTCCTAGAAGAAAGATTGAGCATGCTCTACTATTTTTATCCCAAAAACATATATCTATATCATCTTAGGTAAATATTTATATGTTTGTCTATGTGTTTATTGATTGGATTAGGTCGACAATGTGAATCTGGACTGAGATTATTTGAAAATGATTCTGAATTCTCACTATTTTACAAAGATGGAGATGAAAATTGGAGGAGGGTTGGTGATGTCCCATGGAAGTATGTTCTATATCTTGTCATTGTCAAACATATACATGACATATTTAACATCTATTAAAAGTGATTTTCAGACAATCGTTTCTTTTAATTTTTGGTTGTAAACTTTTTTTAAATGATTTTCAATGACTTAAGAGCATGTTTGAGAATGATTTTTAAAATAAGTATTTAAAGCTAAATTATTTAATTAATATTTGACTCCATTGCTAATTGATTTTGAGATGAAACCCTAAGTTATCTAATAAAGTGAAATAAGAGGAGATTTGTTTAATATGAATTAATAGTCTTTTTTTTAAAAAAAATCATTCACAATAACCTAACAAAAATTACTTGAAAATCACCTCTCAAAGTGATTGATCATAAATCACTTAAAAGAAAAGTGATTTTAGACATATTAAAAGTGATTCCAAACATGTCCATATGGTTACCTAAACTTGTTTGACTACTTACCAAACTATATTTATTTTAATCTAATTTGCTCATTTGGTTATGTTGGTTAATGGACAGGCAATTCGTGGAAGGTGTGAAGAGGCTAAGAATTGCTAGGAAAGATGAGGCTTTTGTTGTCATTCATCAAAATTAA

mRNA sequence

ATGGAGAATAATAATAATGAGTTGATTATGAACAACTCTGTTTATTGTGAAGGGAAAGGGGAAAATGGGATTATAGATTTGGGGTTGAGCCTAAGAACTTTGGAGCAGCCAGAAGTGGGAATAGAAGGAAGAGGGTACATGAATTGGGGAGGACAGGAGGATTACTATTGTTGTAGTAATGAGGAAGATGCAGAGGTTGTGCAGAGCAAACAACAGCAGAGGTGGGCTTATGTTAAAGTCAATATGGATGGTGTCATTGTTGGTAGGAAAGTTTGCATCTTTCAACATGCTACCTATTCCACTCTTGCCCTTCAGCTTGAAGACATGTTTGGTCGACAATGTGAATCTGGACTGAGATTATTTGAAAATGATTCTGAATTCTCACTATTTTACAAAGATGGAGATGAAAATTGGAGGAGGGTTGGTGATGTCCCATGGAAGCAATTCGTGGAAGGTGTGAAGAGGCTAAGAATTGCTAGGAAAGATGAGGCTTTTGTTGTCATTCATCAAAATTAA

Coding sequence (CDS)

ATGGAGAATAATAATAATGAGTTGATTATGAACAACTCTGTTTATTGTGAAGGGAAAGGGGAAAATGGGATTATAGATTTGGGGTTGAGCCTAAGAACTTTGGAGCAGCCAGAAGTGGGAATAGAAGGAAGAGGGTACATGAATTGGGGAGGACAGGAGGATTACTATTGTTGTAGTAATGAGGAAGATGCAGAGGTTGTGCAGAGCAAACAACAGCAGAGGTGGGCTTATGTTAAAGTCAATATGGATGGTGTCATTGTTGGTAGGAAAGTTTGCATCTTTCAACATGCTACCTATTCCACTCTTGCCCTTCAGCTTGAAGACATGTTTGGTCGACAATGTGAATCTGGACTGAGATTATTTGAAAATGATTCTGAATTCTCACTATTTTACAAAGATGGAGATGAAAATTGGAGGAGGGTTGGTGATGTCCCATGGAAGCAATTCGTGGAAGGTGTGAAGAGGCTAAGAATTGCTAGGAAAGATGAGGCTTTTGTTGTCATTCATCAAAATTAA

Protein sequence

MENNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGRGYMNWGGQEDYYCCSNEEDAEVVQSKQQQRWAYVKVNMDGVIVGRKVCIFQHATYSTLALQLEDMFGRQCESGLRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVKRLRIARKDEAFVVIHQN
Homology
[Close]
BLAST of Cla020420 vs. Swiss-Prot
Match: IAA32_ARATH (Auxin-responsive protein IAA32 OS=Arabidopsis thaliana GN=IAA32 PE=2 SV=2)

HSP 1 Score: 145.6 bits (366), Expect = 5.0e-34
Identity = 76/173 (43.93%), Postives = 105/173 (60.69%), Query Frame = 1 

Query: 12  NSVYCEGKGENGIIDLGLSLRTLEQPE-------VGIEGRGYMNWGGQEDYYCCSNEEDA 71
           ++ Y + K   G+IDLGLSLRT++          +G++G G +    Q  Y   +  +  
Sbjct: 17  HTYYSQTKKGGGVIDLGLSLRTIQHETYLPPARMIGLDGYGELIDWSQPSYNSITQLKSE 76

Query: 72  EVVQSKQQQ-----------RWAYVKVNMDGVIVGRKVCIFQHATYSTLALQLEDMFGRQ 131
           +    +  Q           ++AYVKVN+DG++VGRKVC+     Y+TLALQL DMFG Q
Sbjct: 77  DTGHQRLAQGYYNNEGESRGKYAYVKVNLDGLVVGRKVCLVDQGAYATLALQLNDMFGMQ 136

Query: 132 CESGLRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVKRLRIARKDEAFV 167
             SGLRLF+ +SEFSL Y+D +  WR VGDVPWK+FVE V R+RIAR+++A +
Sbjct: 137 TVSGLRLFQTESEFSLVYRDREGIWRNVGDVPWKEFVESVDRMRIARRNDALL 189

[Close]
BLAST of Cla020420 vs. Swiss-Prot
Match: IAA34_ARATH (Auxin-responsive protein IAA34 OS=Arabidopsis thaliana GN=IAA34 PE=2 SV=1)

HSP 1 Score: 142.9 bits (359), Expect = 3.3e-33
Identity = 72/142 (50.70%), Postives = 91/142 (64.08%), Query Frame = 1 

Query: 23  GIIDLGLSLRTLEQPEVGIEGRGYMNWGGQEDYYCCSNEEDAEVVQSKQQQRWAYVKVNM 82
           G+IDLGLSLRT++       G+ Y           CSNE          +++W YVKV M
Sbjct: 59  GVIDLGLSLRTIQHEIYHSSGQRY-----------CSNEG--------YRRKWGYVKVTM 118

Query: 83  DGVIVGRKVCIFQHATYSTLALQLEDMFGRQCESGLRLFENDSEFSLFYKDGDENWRRVG 142
           DG++VGRKVC+  H +YSTLA QLEDMFG Q  SGLRLF+ +SEF L Y+D +  WR  G
Sbjct: 119 DGLVVGRKVCVLDHGSYSTLAHQLEDMFGMQSVSGLRLFQMESEFCLVYRDEEGLWRNAG 178

Query: 143 DVPWKQFVEGVKRLRIARKDEA 165
           DVPW +F+E V+RLRI R+++A
Sbjct: 179 DVPWNEFIESVERLRITRRNDA 181

[Close]
BLAST of Cla020420 vs. Swiss-Prot
Match: IAA10_ORYSI (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-18
Identity = 51/117 (43.59%), Postives = 70/117 (59.83%), Query Frame = 1 

Query: 59  SNEEDAEVVQSKQQQRW---AYVKVNMDGVIVGRKVCIFQHATYSTLALQLEDMFGRQ-- 118
           +NE D +  + + +++     +VKVNMDG ++GRKV +  H +Y TLAL LE MF +   
Sbjct: 144 TNESDVQKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSI 203

Query: 119 --CES----GLRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVKRLRIARKDEA 165
             C S     L+L +N +E+ L Y+D D +W  VGDVPW+ FV  VKRLRI R  +A
Sbjct: 204 GLCASHNTNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDA 260

[Close]
BLAST of Cla020420 vs. Swiss-Prot
Match: IAA10_ORYSJ (Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=2)

HSP 1 Score: 92.4 bits (228), Expect = 5.0e-18
Identity = 51/117 (43.59%), Postives = 70/117 (59.83%), Query Frame = 1 

Query: 59  SNEEDAEVVQSKQQQRW---AYVKVNMDGVIVGRKVCIFQHATYSTLALQLEDMFGRQ-- 118
           +NE D +  + + +++     +VKVNMDG ++GRKV +  H +Y TLAL LE MF +   
Sbjct: 144 TNESDVQKDKEEGEKKGRVAGWVKVNMDGEVIGRKVDLNAHRSYKTLALALELMFTKPSI 203

Query: 119 --CES----GLRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVKRLRIARKDEA 165
             C S     L+L +N +E+ L Y+D D +W  VGDVPW+ FV  VKRLRI R  +A
Sbjct: 204 GLCASHNTNSLKLLDNSAEYQLTYEDRDGDWMLVGDVPWEMFVSSVKRLRIMRTSDA 260

[Close]
BLAST of Cla020420 vs. Swiss-Prot
Match: IAA13_ARATH (Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2)

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-17
Identity = 46/98 (46.94%), Postives = 58/98 (59.18%), Query Frame = 1 

Query: 77  YVKVNMDGVIVGRKVCIFQHATYSTLALQLEDMFGR----------QCESGLRLFENDSE 136
           ++KVNMDGV +GRKV +  H++Y  LA  LEDMF R          Q    LRL +  SE
Sbjct: 131 FIKVNMDGVAIGRKVDLNAHSSYENLAQTLEDMFFRTNPGTVGLTSQFTKPLRLLDGSSE 190

Query: 137 FSLFYKDGDENWRRVGDVPWKQFVEGVKRLRIARKDEA 165
           F L Y+D + +W  VGDVPW+ F+  VKRLR+ +  EA
Sbjct: 191 FVLTYEDKEGDWMLVGDVPWRMFINSVKRLRVMKTSEA 228

[Close]
BLAST of Cla020420 vs. TrEMBL
Match: A0A0A0KT91_CUCSA (Auxin-responsive protein OS=Cucumis sativus GN=Csa_5G610430 PE=3 SV=1)

HSP 1 Score: 298.9 bits (764), Expect = 3.9e-78
Identity = 149/174 (85.63%), Postives = 162/174 (93.10%), Query Frame = 1 

Query: 3   NNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGRGYMNWGGQE-DYYCCSNE 62
           ++NNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPE+GI     MNWGGQ+ DYYCC+++
Sbjct: 4   HDNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEMGI-----MNWGGQDQDYYCCTDQ 63

Query: 63  EDA---EVVQSKQQ-QRWAYVKVNMDGVIVGRKVCIFQHATYSTLALQLEDMFGRQCESG 122
           E+    +VVQSK+Q Q+WAYVKVNMDGVIVGRKVCIFQ+A+YSTLALQLEDMFGRQCESG
Sbjct: 64  EEDHTDQVVQSKEQHQKWAYVKVNMDGVIVGRKVCIFQNASYSTLALQLEDMFGRQCESG 123

Query: 123 LRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVKRLRIARKDEAFVVIHQN 172
           LRLFENDSEFSLFYKDGDENWR VGDVPWKQFVEGVKRLRIARKDEAFVVIHQN
Sbjct: 124 LRLFENDSEFSLFYKDGDENWRSVGDVPWKQFVEGVKRLRIARKDEAFVVIHQN 172

[Close]
BLAST of Cla020420 vs. TrEMBL
Match: W9S577_9ROSA (Auxin-responsive protein OS=Morus notabilis GN=L484_017323 PE=3 SV=1)

HSP 1 Score: 179.9 bits (455), Expect = 2.7e-42
Identity = 107/187 (57.22%), Postives = 127/187 (67.91%), Query Frame = 1 

Query: 1   MENNNNELIMN----NSVYCEGKGEN-GIIDLGLSLRTLEQPE--------VGIEG-RGY 60
           M++N++  ++N     SVY + K E+ G+IDLGLSLRTL QPE        V +EG    
Sbjct: 1   MDSNSSSFLLNPSTVQSVYYQAKEEHDGVIDLGLSLRTL-QPEVYHPSGHLVSLEGYDDL 60

Query: 61  MNWGGQEDYYCCSN------------EEDAEVVQSKQQQRWAYVKVNMDGVIVGRKVCIF 120
           ++W         SN            EED E +QSK  +RWAYVKVNMDG+IVGRKVCI 
Sbjct: 61  IDWPQSNLNLKSSNIIQQRNNFQEDCEEDGEGIQSK--ERWAYVKVNMDGIIVGRKVCIL 120

Query: 121 QHATYSTLALQLEDMFGRQCESGLRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVK 162
            H +YS+LALQLEDMFGRQ  SGLRLF++ SEFSLFYKD  ENWR VGDVPWK+FVE VK
Sbjct: 121 DHGSYSSLALQLEDMFGRQSVSGLRLFQSGSEFSLFYKDRYENWRSVGDVPWKEFVECVK 180

[Close]
BLAST of Cla020420 vs. TrEMBL
Match: M5XIB3_PRUPE (Auxin-responsive protein OS=Prunus persica GN=PRUPE_ppa023002mg PE=3 SV=1)

HSP 1 Score: 178.7 bits (452), Expect = 6.0e-42
Identity = 104/190 (54.74%), Postives = 126/190 (66.32%), Query Frame = 1 

Query: 1   MENNNNELIMN----NSVYCEGKGENGIIDLGLSLRTLEQPEV--------GIEG----- 60
           M+ N +  + N     SVY E K  +GIIDLGLSLR L QPE          +EG     
Sbjct: 1   MDPNASRFLFNPSTLQSVYYEAKENDGIIDLGLSLRAL-QPETYHPSEQLESLEGYDDLI 60

Query: 61  ---RGYMNWGGQEDYYCCSNEED----AEVVQSKQQQRWAYVKVNMDGVIVGRKVCIFQH 120
              +  +N       +  +N ED    AE VQS  ++RWAYVKVNMDG+I+GRKVCI  H
Sbjct: 61  DWPQANLNLKNSSIIHPRNNPEDCDEEAEGVQS--KERWAYVKVNMDGIIIGRKVCILDH 120

Query: 121 ATYSTLALQLEDMFGRQCESGLRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVKRL 167
           ++YS+LA QLEDMFGRQ  SGLRLF+  SEFSLFYKD D+NWR VGDVPW++FVE VKRL
Sbjct: 121 SSYSSLAFQLEDMFGRQSVSGLRLFQTGSEFSLFYKDRDDNWRTVGDVPWREFVECVKRL 180

[Close]
BLAST of Cla020420 vs. TrEMBL
Match: A0A067KJ18_JATCU (Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_09311 PE=3 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 2.3e-41
Identity = 102/183 (55.74%), Postives = 124/183 (67.76%), Query Frame = 1 

Query: 1   MENNNNELIMN----NSVYCEGKGENGIIDLGLSLRTLEQPEV------GIEGRG-YMNW 60
           M++N +   +N    +SVY + K ++GIIDLGLSLRTL QPE         EG G  M+W
Sbjct: 1   MDSNASGFFLNPSAIHSVYYQAKEDDGIIDLGLSLRTL-QPEAYHPSGHWEEGCGEMMSW 60

Query: 61  GGQEDYYCCSN-----------EEDAEVVQSKQQQRWAYVKVNMDGVIVGRKVCIFQHAT 120
           G        SN           +E+AE VQSK  + WAYVKVNM+GV++GRK+CI  H  
Sbjct: 61  GQANSSIKHSNSGYQGTVQQECDEEAEGVQSK--ENWAYVKVNMEGVVIGRKICILDHVG 120

Query: 121 YSTLALQLEDMFGRQCESGLRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVKRLRI 162
           YS+LALQLEDMFGRQ  +GLRLF+  SEF LFYKD D+NWR VGDVPWK+FVE VKRLRI
Sbjct: 121 YSSLALQLEDMFGRQTATGLRLFQAGSEFCLFYKDRDDNWRTVGDVPWKEFVECVKRLRI 180

[Close]
BLAST of Cla020420 vs. TrEMBL
Match: F6HEV6_VITVI (Auxin-responsive protein OS=Vitis vinifera GN=VIT_01s0011g04070 PE=3 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 7.3e-40
Identity = 98/179 (54.75%), Postives = 120/179 (67.04%), Query Frame = 1 

Query: 14  VYCEGKGENGIIDLGLSLRTLEQPEV-------------GIEGRGY----MNWGGQEDYY 73
           VY + K ++GIIDLGLSLRTL QP+V              +EG G     ++W   E   
Sbjct: 18  VYYQTKEDDGIIDLGLSLRTL-QPQVYHPTGHNAFESVGSLEGYGAYGEPVDWPQLEAQS 77

Query: 74  CCSN-----------EEDAEVVQSKQQQRWAYVKVNMDGVIVGRKVCIFQHATYSTLALQ 133
             SN           EE+ E VQSK  +RWAYVKVNMDGV++GRK+C+   A YS+LALQ
Sbjct: 78  RNSNSGCPKVIPEDCEEETEGVQSK--ERWAYVKVNMDGVVIGRKICVLDLAGYSSLALQ 137

Query: 134 LEDMFGRQCESGLRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVKRLRIARKDEA 165
           LEDMFGR   SGLRLF+ +SEF+LFYKD +ENWR VGDVPWK+FV+ +KRLRI RK+EA
Sbjct: 138 LEDMFGRDSLSGLRLFQRESEFALFYKDREENWRTVGDVPWKEFVDSIKRLRIVRKNEA 193

[Close]
BLAST of Cla020420 vs. NCBI nr
Match: gi|449435210|ref|XP_004135388.1| (PREDICTED: auxin-responsive protein IAA32 [Cucumis sativus])

HSP 1 Score: 298.9 bits (764), Expect = 5.7e-78
Identity = 149/174 (85.63%), Postives = 162/174 (93.10%), Query Frame = 1 

Query: 3   NNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGRGYMNWGGQE-DYYCCSNE 62
           ++NNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPE+GI     MNWGGQ+ DYYCC+++
Sbjct: 4   HDNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEMGI-----MNWGGQDQDYYCCTDQ 63

Query: 63  EDA---EVVQSKQQ-QRWAYVKVNMDGVIVGRKVCIFQHATYSTLALQLEDMFGRQCESG 122
           E+    +VVQSK+Q Q+WAYVKVNMDGVIVGRKVCIFQ+A+YSTLALQLEDMFGRQCESG
Sbjct: 64  EEDHTDQVVQSKEQHQKWAYVKVNMDGVIVGRKVCIFQNASYSTLALQLEDMFGRQCESG 123

Query: 123 LRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVKRLRIARKDEAFVVIHQN 172
           LRLFENDSEFSLFYKDGDENWR VGDVPWKQFVEGVKRLRIARKDEAFVVIHQN
Sbjct: 124 LRLFENDSEFSLFYKDGDENWRSVGDVPWKQFVEGVKRLRIARKDEAFVVIHQN 172

[Close]
BLAST of Cla020420 vs. NCBI nr
Match: gi|659091613|ref|XP_008446639.1| (PREDICTED: auxin-responsive protein IAA32 [Cucumis melo])

HSP 1 Score: 298.9 bits (764), Expect = 5.7e-78
Identity = 149/174 (85.63%), Postives = 162/174 (93.10%), Query Frame = 1 

Query: 3   NNNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEVGIEGRGYMNWGGQE-DYYCCSNE 62
           ++NNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPE+GI     MNWGGQ+ DYYCC+++
Sbjct: 4   HDNNELIMNNSVYCEGKGENGIIDLGLSLRTLEQPEMGI-----MNWGGQDQDYYCCTDQ 63

Query: 63  EDA---EVVQSKQQ-QRWAYVKVNMDGVIVGRKVCIFQHATYSTLALQLEDMFGRQCESG 122
           E+    +VVQSK+Q Q+WAYVKVNMDGVIVGRKVCIFQ+A+YSTLALQLEDMFGRQCESG
Sbjct: 64  EEDHTDQVVQSKEQHQKWAYVKVNMDGVIVGRKVCIFQNASYSTLALQLEDMFGRQCESG 123

Query: 123 LRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVKRLRIARKDEAFVVIHQN 172
           LRLFENDSEFSLFYKDGDENWR VGDVPWKQFVEGVKRLRIARKDEAFVVIHQN
Sbjct: 124 LRLFENDSEFSLFYKDGDENWRSVGDVPWKQFVEGVKRLRIARKDEAFVVIHQN 172

[Close]
BLAST of Cla020420 vs. NCBI nr
Match: gi|703118818|ref|XP_010101693.1| (Auxin-responsive protein IAA32 [Morus notabilis])

HSP 1 Score: 179.9 bits (455), Expect = 3.8e-42
Identity = 107/187 (57.22%), Postives = 127/187 (67.91%), Query Frame = 1 

Query: 1   MENNNNELIMN----NSVYCEGKGEN-GIIDLGLSLRTLEQPE--------VGIEG-RGY 60
           M++N++  ++N     SVY + K E+ G+IDLGLSLRTL QPE        V +EG    
Sbjct: 1   MDSNSSSFLLNPSTVQSVYYQAKEEHDGVIDLGLSLRTL-QPEVYHPSGHLVSLEGYDDL 60

Query: 61  MNWGGQEDYYCCSN------------EEDAEVVQSKQQQRWAYVKVNMDGVIVGRKVCIF 120
           ++W         SN            EED E +QSK  +RWAYVKVNMDG+IVGRKVCI 
Sbjct: 61  IDWPQSNLNLKSSNIIQQRNNFQEDCEEDGEGIQSK--ERWAYVKVNMDGIIVGRKVCIL 120

Query: 121 QHATYSTLALQLEDMFGRQCESGLRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVK 162
            H +YS+LALQLEDMFGRQ  SGLRLF++ SEFSLFYKD  ENWR VGDVPWK+FVE VK
Sbjct: 121 DHGSYSSLALQLEDMFGRQSVSGLRLFQSGSEFSLFYKDRYENWRSVGDVPWKEFVECVK 180

[Close]
BLAST of Cla020420 vs. NCBI nr
Match: gi|645276429|ref|XP_008243285.1| (PREDICTED: LOW QUALITY PROTEIN: auxin-responsive protein IAA32-like [Prunus mume])

HSP 1 Score: 178.7 bits (452), Expect = 8.5e-42
Identity = 105/193 (54.40%), Postives = 128/193 (66.32%), Query Frame = 1 

Query: 1   MENNNNELIMN----NSVYCEGKGENGIIDLGLSLRTLEQPE--------VGIEGRG-YM 60
           M+ N +  + N     SVY E K  +GIIDLGLSLR L QPE        V +EG    +
Sbjct: 60  MDPNASRFLFNPSTLQSVYYEAKENDGIIDLGLSLRAL-QPETYHPSEQLVSLEGYDDLI 119

Query: 61  NWGG--------------QEDYYCCSNEEDAEVVQSKQQQRWAYVKVNMDGVIVGRKVCI 120
           +W                Q ++  C  +E+AE VQS  ++RWAYVKVNMDG+I+GRKVCI
Sbjct: 120 DWPQANLNLKNSSITSKKQPEFEDC--DEEAEGVQS--KERWAYVKVNMDGIIIGRKVCI 179

Query: 121 FQHATYSTLALQLEDMFGRQCESGLRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGV 167
             H+ YS+LA QLEDMFGRQ  SGLRLF+  SEFSLFYKD D+NWR VGDVPW++FVE V
Sbjct: 180 LDHSGYSSLAFQLEDMFGRQSVSGLRLFQTGSEFSLFYKDRDDNWRTVGDVPWREFVECV 239

[Close]
BLAST of Cla020420 vs. NCBI nr
Match: gi|596242090|ref|XP_007224495.1| (hypothetical protein PRUPE_ppa023002mg [Prunus persica])

HSP 1 Score: 178.7 bits (452), Expect = 8.5e-42
Identity = 104/190 (54.74%), Postives = 126/190 (66.32%), Query Frame = 1 

Query: 1   MENNNNELIMN----NSVYCEGKGENGIIDLGLSLRTLEQPEV--------GIEG----- 60
           M+ N +  + N     SVY E K  +GIIDLGLSLR L QPE          +EG     
Sbjct: 1   MDPNASRFLFNPSTLQSVYYEAKENDGIIDLGLSLRAL-QPETYHPSEQLESLEGYDDLI 60

Query: 61  ---RGYMNWGGQEDYYCCSNEED----AEVVQSKQQQRWAYVKVNMDGVIVGRKVCIFQH 120
              +  +N       +  +N ED    AE VQS  ++RWAYVKVNMDG+I+GRKVCI  H
Sbjct: 61  DWPQANLNLKNSSIIHPRNNPEDCDEEAEGVQS--KERWAYVKVNMDGIIIGRKVCILDH 120

Query: 121 ATYSTLALQLEDMFGRQCESGLRLFENDSEFSLFYKDGDENWRRVGDVPWKQFVEGVKRL 167
           ++YS+LA QLEDMFGRQ  SGLRLF+  SEFSLFYKD D+NWR VGDVPW++FVE VKRL
Sbjct: 121 SSYSSLAFQLEDMFGRQSVSGLRLFQTGSEFSLFYKDRDDNWRTVGDVPWREFVECVKRL 180

The following BLAST results are available for this feature:
BLAST of Cla020420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
IAA32_ARATH5.0e-3443.93Auxin-responsive protein IAA32 OS=Arabidopsis thaliana GN=IAA32 PE=2 SV=2[more]
IAA34_ARATH3.3e-3350.70Auxin-responsive protein IAA34 OS=Arabidopsis thaliana GN=IAA34 PE=2 SV=1[more]
IAA10_ORYSI5.0e-1843.59Auxin-responsive protein IAA10 OS=Oryza sativa subsp. indica GN=IAA10 PE=2 SV=2[more]
IAA10_ORYSJ5.0e-1843.59Auxin-responsive protein IAA10 OS=Oryza sativa subsp. japonica GN=IAA10 PE=2 SV=... [more]
IAA13_ARATH1.9e-1746.94Auxin-responsive protein IAA13 OS=Arabidopsis thaliana GN=IAA13 PE=1 SV=2[more]
BLAST of Cla020420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KT91_CUCSA3.9e-7885.63Auxin-responsive protein OS=Cucumis sativus GN=Csa_5G610430 PE=3 SV=1[more]
W9S577_9ROSA2.7e-4257.22Auxin-responsive protein OS=Morus notabilis GN=L484_017323 PE=3 SV=1[more]
M5XIB3_PRUPE6.0e-4254.74Auxin-responsive protein OS=Prunus persica GN=PRUPE_ppa023002mg PE=3 SV=1[more]
A0A067KJ18_JATCU2.3e-4155.74Auxin-responsive protein OS=Jatropha curcas GN=JCGZ_09311 PE=3 SV=1[more]
F6HEV6_VITVI7.3e-4054.75Auxin-responsive protein OS=Vitis vinifera GN=VIT_01s0011g04070 PE=3 SV=1[more]
BLAST of Cla020420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449435210|ref|XP_004135388.1|5.7e-7885.63PREDICTED: auxin-responsive protein IAA32 [Cucumis sativus][more]
gi|659091613|ref|XP_008446639.1|5.7e-7885.63PREDICTED: auxin-responsive protein IAA32 [Cucumis melo][more]
gi|703118818|ref|XP_010101693.1|3.8e-4257.22Auxin-responsive protein IAA32 [Morus notabilis][more]
gi|645276429|ref|XP_008243285.1|8.5e-4254.40PREDICTED: LOW QUALITY PROTEIN: auxin-responsive protein IAA32-like [Prunus mume... [more]
gi|596242090|ref|XP_007224495.1|8.5e-4254.74hypothetical protein PRUPE_ppa023002mg [Prunus persica][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000270PB1_dom
IPR003311AUX_IAA
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009734 auxin-activated signaling pathway
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0050794 regulation of cellular process
biological_process GO:0006351 transcription, DNA-templated
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0046983 protein dimerization activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla020420Cla020420.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000270PB1 domainPROFILEPS51745PB1coord: 75..163
score: 18
IPR003311AUX/IAA proteinPANTHERPTHR31734FAMILY NOT NAMEDcoord: 59..168
score: 4.8
NoneNo IPR availablePANTHERPTHR31734:SF29AUXIN-RESPONSIVE PROTEIN IAA32-RELATEDcoord: 59..168
score: 4.8
NoneNo IPR availableunknownSSF54277CAD & PB1 domainscoord: 74..158
score: 1.8

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla020420Cla97C05G104280Watermelon (97103) v2wmwmbB207
Cla020420Csa5G610430Cucumber (Chinese Long) v2cuwmB401
Cla020420MELO3C012276Melon (DHL92) v3.5.1mewmB061
Cla020420CSPI05G25560Wild cucumber (PI 183967)cpiwmB410
Cla020420Cucsa.283300Cucumber (Gy14) v1cgywmB524
Cla020420CmaCh18G009960Cucurbita maxima (Rimu)cmawmB372
Cla020420CmaCh04G014880Cucurbita maxima (Rimu)cmawmB699
Cla020420CmoCh04G015610Cucurbita moschata (Rifu)cmowmB693
Cla020420CmoCh18G010050Cucurbita moschata (Rifu)cmowmB365
Cla020420Lsi04G002230Bottle gourd (USVL1VR-Ls)lsiwmB312
Cla020420Cp4.1LG09g03280Cucurbita pepo (Zucchini)cpewmB031
Cla020420Cp4.1LG01g13870Cucurbita pepo (Zucchini)cpewmB427
Cla020420MELO3C012276.2Melon (DHL92) v3.6.1medwmB061
Cla020420Carg01857Silver-seed gourdcarwmB0842
Cla020420Carg19045Silver-seed gourdcarwmB1050
Cla020420CsaV3_5G034610Cucumber (Chinese Long) v3cucwmB428
Cla020420Bhi07G001071Wax gourdwgowmB550
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla020420Cucurbita pepo (Zucchini)cpewmB178
Cla020420Cucurbita pepo (Zucchini)cpewmB653
Cla020420Bottle gourd (USVL1VR-Ls)lsiwmB025
Cla020420Bottle gourd (USVL1VR-Ls)lsiwmB402
Cla020420Cucumber (Gy14) v2cgybwmB038
Cla020420Cucumber (Gy14) v2cgybwmB372
Cla020420Cucumber (Gy14) v2cgybwmB377
Cla020420Melon (DHL92) v3.6.1medwmB016
Cla020420Melon (DHL92) v3.6.1medwmB266
Cla020420Silver-seed gourdcarwmB0591
Cla020420Silver-seed gourdcarwmB0792
Cla020420Cucumber (Chinese Long) v3cucwmB045
Cla020420Cucumber (Chinese Long) v3cucwmB424
Cla020420Watermelon (97103) v2wmwmbB195
Cla020420Watermelon (97103) v2wmwmbB213
Cla020420Wax gourdwgowmB072
Cla020420Wax gourdwgowmB210
Cla020420Watermelon (97103) v1wmwmB128
Cla020420Watermelon (97103) v1wmwmB136
Cla020420Cucumber (Gy14) v1cgywmB511
Cla020420Cucurbita maxima (Rimu)cmawmB112
Cla020420Cucurbita maxima (Rimu)cmawmB270
Cla020420Cucurbita maxima (Rimu)cmawmB709
Cla020420Cucurbita moschata (Rifu)cmowmB259
Cla020420Cucurbita moschata (Rifu)cmowmB705
Cla020420Melon (DHL92) v3.5.1mewmB020
Cla020420Melon (DHL92) v3.5.1mewmB275
Cla020420Watermelon (Charleston Gray)wcgwmB139
Cla020420Watermelon (Charleston Gray)wcgwmB285
Cla020420Watermelon (Charleston Gray)wcgwmB326
Cla020420Cucumber (Chinese Long) v2cuwmB039
Cla020420Cucumber (Chinese Long) v2cuwmB398