Cla020114 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla020114
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Uncharacterized plant-specific domain TIGR01589 family protein (AHRD V1 *--- Q60CZ4_SOLDE); contains Interpro domain(s) IPR006476 Conserved hypothetical protein CHP01589, plant
Location	Chr2 : 23523412 .. 23523967 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTGATTCTTCTGCTGCTTACATTCATATGGTAACCATTCATTTCCTCTTTCATACTATTTCTTTCTTAGTAGTTTTGATTAAATCCCATTTCTATAACATAAACATAAATGTCTAAAAACTTTATTATTCCTTTCGCTTATAGGTGCAAAACTTGATTGAAAGGTGCTTGATCTTCCACATGAATAAAGAAGAGTGCATTGAAGCTCTCTCCAAATACGCTCATATCAACCCCATAATTACCTCTACTGGTTCGTTCACATTTTTCTCTTTTCTTCTTCCACCTCTAACTCCCTCACAGTGTGGATTACAAATAAATTGCAAACGTATTTTGAATTTGCATCTAGCTAGTAGTTATTAGAATAGCATGTAGATTATTTTAGATTTCACACAACTCATTTTATTCTTACACAGTGTGGAAGGAATTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATGCAGAGTCTAGGGGCAGAAATGATAGAATATTGGCTGAAGAAGAGACAAGGCAGTTGATCCAAAGGATGATGTCTAAACATATTGATGGCTAG

mRNA sequence

ATGGCTGATTCTTCTGCTGCTTACATTCATATGGTGCAAAACTTGATTGAAAGGTGCTTGATCTTCCACATGAATAAAGAAGAGTGCATTGAAGCTCTCTCCAAATACGCTCATATCAACCCCATAATTACCTCTACTGTGTGGAAGGAATTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATGCAGAGTCTAGGGGCAGAAATGATAGAATATTGGCTGAAGAAGAGACAAGGCAGTTGATCCAAAGGATGATGTCTAAACATATTGATGGCTAG

Coding sequence (CDS)

ATGGCTGATTCTTCTGCTGCTTACATTCATATGGTGCAAAACTTGATTGAAAGGTGCTTGATCTTCCACATGAATAAAGAAGAGTGCATTGAAGCTCTCTCCAAATACGCTCATATCAACCCCATAATTACCTCTACTGTGTGGAAGGAATTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATGCAGAGTCTAGGGGCAGAAATGATAGAATATTGGCTGAAGAAGAGACAAGGCAGTTGATCCAAAGGATGATGTCTAAACATATTGATGGCTAG

Protein sequence

MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFEAYAESRGRNDRILAEEETRQLIQRMMSKHIDG

Homology

[Close]

BLAST of Cla020114 vs. TrEMBL
Match: A0A0A0KQ71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G179770 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.6e-38
Identity = 80/91 (87.91%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQ+LIE+CLIFHMNK+ECIEALSK+A+I+PIITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSKHID 92
          AY+E +GRNDRILAEEETR+LIQRMMSKH D
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSD 91

[Close]

BLAST of Cla020114 vs. TrEMBL
Match: U5G530_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s21830g PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.0e-29
Identity = 63/88 (71.59%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIF+M KEEC+EALSK+A+I P+ITSTVWKELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFNMTKEECMEALSKHANIEPVITSTVWKELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSK 89
          AYA+S+ ++DR ++EEET ++IQRM+S+
Sbjct: 61 AYAQSKSKDDR-MSEEETSRVIQRMISQ 87

[Close]

BLAST of Cla020114 vs. TrEMBL
Match: B9SAL5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1103690 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.0e-29
Identity = 63/88 (71.59%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIFHM KEEC+EALSK+A+I P+ITSTVW ELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFHMTKEECMEALSKHANITPVITSTVWNELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSK 89
          AY ES+ ++DR ++EEET Q+IQ+M+S+
Sbjct: 61 AYIESKRKDDR-MSEEETSQMIQKMISE 87

[Close]

BLAST of Cla020114 vs. TrEMBL
Match: W9R2B2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025422 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.4e-28
Identity = 62/87 (71.26%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIF MNKEEC+EALSK+A+I P+ITSTVW ELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFRMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMS 88
          AYA+S+ + D+ ++EEET Q+IQ+M S
Sbjct: 61 AYAQSQSKEDK-MSEEETSQMIQKMFS 86

[Close]

BLAST of Cla020114 vs. TrEMBL
Match: A0A0A0KU49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505220 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-28
Identity = 62/87 (71.26%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          MADSS++Y+HMVQ+LIE+CLIFHM KEEC++ALSK+A I PIITSTVW ELEKEN+EFFE
Sbjct: 1  MADSSSSYMHMVQHLIEKCLIFHMTKEECMDALSKHADIKPIITSTVWNELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMS 88
          AYA+S   +DR ++EEET Q+IQ+M+S
Sbjct: 61 AYAQSHNNSDR-MSEEETSQMIQKMIS 86

[Close]

BLAST of Cla020114 vs. NCBI nr
Match: gi|449459944|ref|XP_004147706.1| (PREDICTED: uncharacterized protein LOC101203417 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.4e-38
Identity = 80/91 (87.91%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQ+LIE+CLIFHMNK+ECIEALSK+A+I+PIITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSKHID 92
          AY+E +GRNDRILAEEETR+LIQRMMSKH D
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSD 91

[Close]

BLAST of Cla020114 vs. NCBI nr
Match: gi|659123364|ref|XP_008461625.1| (PREDICTED: uncharacterized protein LOC103500185 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 7.6e-37
Identity = 79/92 (85.87%), Postives = 89/92 (96.74%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQ+LIE+CLIFHMNK+ECIEALSK+A+I+P+ITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPVITSTVWKELEKENREFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQR-MMSKHID 92
          AY+E +GRNDRILAEEETR+LIQR MMSKH D
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMMSKHSD 92

[Close]

BLAST of Cla020114 vs. NCBI nr
Match: gi|255564072|ref|XP_002523034.1| (PREDICTED: uncharacterized protein LOC8260844 [Ricinus communis])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 63/88 (71.59%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIFHM KEEC+EALSK+A+I P+ITSTVW ELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFHMTKEECMEALSKHANITPVITSTVWNELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSK 89
          AY ES+ ++DR ++EEET Q+IQ+M+S+
Sbjct: 61 AYIESKRKDDR-MSEEETSQMIQKMISE 87

[Close]

BLAST of Cla020114 vs. NCBI nr
Match: gi|743844026|ref|XP_011027103.1| (PREDICTED: uncharacterized protein LOC105127482 [Populus euphratica])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 63/88 (71.59%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIF+M KEEC+EALSK+A+I P+ITSTVWKELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFNMTKEECMEALSKHANIEPVITSTVWKELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSK 89
          AYA+S+ ++DR ++EEET ++IQRM+S+
Sbjct: 61 AYAQSKSKDDR-MSEEETSRVIQRMISQ 87

[Close]

BLAST of Cla020114 vs. NCBI nr
Match: gi|566192088|ref|XP_006378740.1| (hypothetical protein POPTR_0010s21830g [Populus trichocarpa])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 63/88 (71.59%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIF+M KEEC+EALSK+A+I P+ITSTVWKELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFNMTKEECMEALSKHANIEPVITSTVWKELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSK 89
          AYA+S+ ++DR ++EEET ++IQRM+S+
Sbjct: 61 AYAQSKSKDDR-MSEEETSRVIQRMISQ 87

The following BLAST results are available for this feature:

BLAST of Cla020114 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ71_CUCSA	1.6e-38	87.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G179770 PE=4 SV=1	[more]
U5G530_POPTR	9.0e-29	71.59	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s21830g PE=4 SV=1	[more]
B9SAL5_RICCO	9.0e-29	71.59	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1103690 PE=4 SV=1	[more]
W9R2B2_9ROSA	3.4e-28	71.26	Uncharacterized protein OS=Morus notabilis GN=L484_025422 PE=4 SV=1	[more]
A0A0A0KU49_CUCSA	5.9e-28	71.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505220 PE=4 SV=1	[more]

BLAST of Cla020114 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459944\|ref\|XP_004147706.1\|	2.4e-38	87.91	PREDICTED: uncharacterized protein LOC101203417 [Cucumis sativus]	[more]
gi\|659123364\|ref\|XP_008461625.1\|	7.6e-37	85.87	PREDICTED: uncharacterized protein LOC103500185 [Cucumis melo]	[more]
gi\|255564072\|ref\|XP_002523034.1\|	1.3e-28	71.59	PREDICTED: uncharacterized protein LOC8260844 [Ricinus communis]	[more]
gi\|743844026\|ref\|XP_011027103.1\|	1.3e-28	71.59	PREDICTED: uncharacterized protein LOC105127482 [Populus euphratica]	[more]
gi\|566192088\|ref\|XP_006378740.1\|	1.3e-28	71.59	hypothetical protein POPTR_0010s21830g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006476	CHP01589_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0006635	fatty acid beta-oxidation
biological_process	GO:0032502	developmental process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016829	lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla020114	Cla020114.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006476	Conserved hypothetical protein CHP01589, plant	PFAM	PF09713	A_thal_3526	coord: 12..62 score: 8.5
IPR006476	Conserved hypothetical protein CHP01589, plant	TIGRFAMs	TIGR01589	TIGR01589	coord: 9..63 score: 1.6
None	No IPR available	PANTHER	PTHR31871	FAMILY NOT NAMED	coord: 1..88 score: 2.3
None	No IPR available	PANTHER	PTHR31871:SF10	GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K5K13	coord: 1..88 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla020114	Cla97C02G039130	Watermelon (97103) v2	wmwmbB316
Cla020114	Cla97C04G075200	Watermelon (97103) v2	wmwmbB342
Cla020114	Csa5G179770	Cucumber (Chinese Long) v2	cuwmB428
Cla020114	MELO3C023827	Melon (DHL92) v3.5.1	mewmB071
Cla020114	ClCG02G013460	Watermelon (Charleston Gray)	wcgwmB197
Cla020114	CSPI04G14310	Wild cucumber (PI 183967)	cpiwmB355
Cla020114	CSPI05G09280	Wild cucumber (PI 183967)	cpiwmB440
Cla020114	Cucsa.165620	Cucumber (Gy14) v1	cgywmB310
Cla020114	CmaCh04G012100	Cucurbita maxima (Rimu)	cmawmB723
Cla020114	CmaCh04G002350	Cucurbita maxima (Rimu)	cmawmB724
Cla020114	CmoCh04G012840	Cucurbita moschata (Rifu)	cmowmB719
Cla020114	CmoCh04G002410	Cucurbita moschata (Rifu)	cmowmB720
Cla020114	Cp4.1LG01g10650	Cucurbita pepo (Zucchini)	cpewmB451
Cla020114	Cp4.1LG01g04700	Cucurbita pepo (Zucchini)	cpewmB452
Cla020114	CsGy5G006640	Cucumber (Gy14) v2	cgybwmB401
Cla020114	MELO3C023827.2	Melon (DHL92) v3.6.1	medwmB070
Cla020114	CsaV3_5G006690	Cucumber (Chinese Long) v3	cucwmB454
Cla020114	CsaV3_4G024650	Cucumber (Chinese Long) v3	cucwmB366
Cla020114	Bhi03G001249	Wax gourd	wgowmB458

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Cla020114	Cla018239	Watermelon (97103) v1	wmwmB154

The following block(s) are covering this gene:


Gene	Organism	Block
Cla020114	Silver-seed gourd	carwmB0864
Cla020114	Wax gourd	wgowmB561
Cla020114	Bottle gourd (USVL1VR-Ls)	lsiwmB331