ClCG02G013460 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG02G013460
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Plant-specific domain TIGR01589 family protein
Location	CG_Chr02 : 27413877 .. 27414476 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATCAAATACCCCAAGTAGTGTATTTCTATATAATACAAGATTTAATGGCTGATTCTTCTGCTGCTTACATTCATATGGTAACCATTCATTTCCTCTTTCATACTATTTCTTTCTTAGTAGTTTTGATTAAATCCCATTTCTATAACATAAACATAAATGTCTAAAAACTTTATTATTCCTTTCGCTTATAGGTGCAAAACTTGATTGAAAGGTGCTTGATCTTCCACATGAATAAAGAAGAGTGCATTGAAGCTCTCTCCAAATACGCTCATATCAACCCCATAATTACCTCTACTGGTTCGTTCACATTTTTCTCTTTTCTTCTTCCACCTCTAACTCCCTCACAGTGTGGATTACAAATAAATTGCAAACGTATTTTGAATTTGCATCTAGCTAGTAGTTATTAGAATAGCATGTAGATTATTTTAGATTTCACACAACTCATTTTATTCTTACACAGTGTGGAAGGAATTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATGCAGAGTCTAGGGGCAGAAATGATAGAATATTGGCTGAAGAAGAGACAAGGCAGTTGATCCAAAGGATGATGTCTAAACATATTGATGGCTAG

mRNA sequence

ATCAAATACCCCAAGTAGTGTATTTCTATATAATACAAGATTTAATGGCTGATTCTTCTGCTGCTTACATTCATATGGTGCAAAACTTGATTGAAAGGTGCTTGATCTTCCACATGAATAAAGAAGAGTGCATTGAAGCTCTCTCCAAATACGCTCATATCAACCCCATAATTACCTCTACTGTGTGGAAGGAATTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATGCAGAGTCTAGGGGCAGAAATGATAGAATATTGGCTGAAGAAGAGACAAGGCAGTTGATCCAAAGGATGATGTCTAAACATATTGATGGCTAG

Coding sequence (CDS)

ATGGCTGATTCTTCTGCTGCTTACATTCATATGGTGCAAAACTTGATTGAAAGGTGCTTGATCTTCCACATGAATAAAGAAGAGTGCATTGAAGCTCTCTCCAAATACGCTCATATCAACCCCATAATTACCTCTACTGTGTGGAAGGAATTGGAGAAAGAAAATAGAGAGTTCTTTGAAGCTTATGCAGAGTCTAGGGGCAGAAATGATAGAATATTGGCTGAAGAAGAGACAAGGCAGTTGATCCAAAGGATGATGTCTAAACATATTGATGGCTAG

Protein sequence

MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFEAYAESRGRNDRILAEEETRQLIQRMMSKHIDG

Homology

[Close]

BLAST of ClCG02G013460 vs. TrEMBL
Match: A0A0A0KQ71_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G179770 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.6e-38
Identity = 80/91 (87.91%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQ+LIE+CLIFHMNK+ECIEALSK+A+I+PIITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSKHID 92
          AY+E +GRNDRILAEEETR+LIQRMMSKH D
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSD 91

[Close]

BLAST of ClCG02G013460 vs. TrEMBL
Match: U5G530_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s21830g PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.0e-29
Identity = 63/88 (71.59%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIF+M KEEC+EALSK+A+I P+ITSTVWKELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFNMTKEECMEALSKHANIEPVITSTVWKELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSK 89
          AYA+S+ ++DR ++EEET ++IQRM+S+
Sbjct: 61 AYAQSKSKDDR-MSEEETSRVIQRMISQ 87

[Close]

BLAST of ClCG02G013460 vs. TrEMBL
Match: B9SAL5_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1103690 PE=4 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 9.0e-29
Identity = 63/88 (71.59%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIFHM KEEC+EALSK+A+I P+ITSTVW ELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFHMTKEECMEALSKHANITPVITSTVWNELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSK 89
          AY ES+ ++DR ++EEET Q+IQ+M+S+
Sbjct: 61 AYIESKRKDDR-MSEEETSQMIQKMISE 87

[Close]

BLAST of ClCG02G013460 vs. TrEMBL
Match: W9R2B2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_025422 PE=4 SV=1)

HSP 1 Score: 132.1 bits (331), Expect = 3.4e-28
Identity = 62/87 (71.26%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIF MNKEEC+EALSK+A+I P+ITSTVW ELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFRMNKEECMEALSKHANIKPVITSTVWNELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMS 88
          AYA+S+ + D+ ++EEET Q+IQ+M S
Sbjct: 61 AYAQSQSKEDK-MSEEETSQMIQKMFS 86

[Close]

BLAST of ClCG02G013460 vs. TrEMBL
Match: A0A0A0KU49_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505220 PE=4 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.9e-28
Identity = 62/87 (71.26%), Postives = 78/87 (89.66%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          MADSS++Y+HMVQ+LIE+CLIFHM KEEC++ALSK+A I PIITSTVW ELEKEN+EFFE
Sbjct: 1  MADSSSSYMHMVQHLIEKCLIFHMTKEECMDALSKHADIKPIITSTVWNELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMS 88
          AYA+S   +DR ++EEET Q+IQ+M+S
Sbjct: 61 AYAQSHNNSDR-MSEEETSQMIQKMIS 86

[Close]

BLAST of ClCG02G013460 vs. TAIR10
Match: AT3G55240.1 (AT3G55240.1 Plant protein 1589 of unknown function)

HSP 1 Score: 125.2 bits (313), Expect = 2.1e-29
Identity = 59/88 (67.05%), Postives = 78/88 (88.64%), Query Frame = 1


Query: 1  MADSSAA-YIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFF 60
          MADSS+A YIHMVQ++IE+CLIFHM+KEEC+EALSK+A+I P+ITSTVWKELEKEN+EFF
Sbjct: 1  MADSSSASYIHMVQHMIEKCLIFHMSKEECVEALSKHANITPVITSTVWKELEKENKEFF 60

Query: 61 EAYAESRGRNDRILAEEETRQLIQRMMS 88
          +AY E + + ++ ++EEET Q+IQ+++S
Sbjct: 61 KAYEERQSKQEQ-MSEEETNQMIQKIIS 87

[Close]

BLAST of ClCG02G013460 vs. TAIR10
Match: AT3G28990.1 (AT3G28990.1 Plant protein 1589 of unknown function)

HSP 1 Score: 105.9 bits (263), Expect = 1.3e-23
Identity = 52/84 (61.90%), Postives = 65/84 (77.38%), Query Frame = 1


Query: 4  SSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFEAYA 63
          S A YIH+VQ++IE CL F+M+KEEC+EALS+ A+INPIITSTVWKEL KEN++FFE Y 
Sbjct: 5  SPAVYIHLVQHMIETCLTFNMSKEECMEALSENANINPIITSTVWKELVKENKDFFETY- 64

Query: 64 ESRGRNDRILAEEETRQLIQRMMS 88
          E +      ++EEET QLIQ ++S
Sbjct: 65 EQKLMKKESMSEEETNQLIQNIIS 87

[Close]

BLAST of ClCG02G013460 vs. TAIR10
Match: AT5G02580.1 (AT5G02580.1 Plant protein 1589 of unknown function)

HSP 1 Score: 101.3 bits (251), Expect = 3.3e-22
Identity = 48/85 (56.47%), Postives = 65/85 (76.47%), Query Frame = 1


Query: 4  SSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFEAYA 63
          S A+YIH+V +LIE C++F+M KEEC++AL K+A+I PIITSTVWKEL KEN+EFFEAY 
Sbjct: 7  SQASYIHLVHHLIEECIVFNMGKEECMDALFKHANIKPIITSTVWKELAKENKEFFEAYE 66

Query: 64 ESRGRNDRILAEEETRQLIQRMMSK 89
              R + I  E+ET + I+ ++S+
Sbjct: 67 R---RREEIPTEKETARRIRDLLSR 88

[Close]

BLAST of ClCG02G013460 vs. TAIR10
Match: AT3G10250.1 (AT3G10250.1 Plant protein 1589 of unknown function)

HSP 1 Score: 66.6 bits (161), Expect = 9.0e-12
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 9  IHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFEAY 63
          I +VQNLIERCL  +MN++E ++ L + A I P  T  VW++LE+ENREFF+AY
Sbjct: 14 IQLVQNLIERCLQLYMNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAY 67

[Close]

BLAST of ClCG02G013460 vs. TAIR10
Match: AT5G04090.2 (AT5G04090.2 Plant protein 1589 of unknown function)

HSP 1 Score: 66.6 bits (161), Expect = 9.0e-12
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 1


Query: 9  IHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFEAY 63
          I +VQNLIERCL  +MN++E ++ L + A I P  T  VW++LE+ENREFF+AY
Sbjct: 14 IQLVQNLIERCLQLYMNQKEVVDTLLEQAKIEPGFTELVWQKLEEENREFFKAY 67

[Close]

BLAST of ClCG02G013460 vs. NCBI nr
Match: gi|449459944|ref|XP_004147706.1| (PREDICTED: uncharacterized protein LOC101203417 [Cucumis sativus])

HSP 1 Score: 166.4 bits (420), Expect = 2.4e-38
Identity = 80/91 (87.91%), Postives = 89/91 (97.80%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQ+LIE+CLIFHMNK+ECIEALSK+A+I+PIITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPIITSTVWKELEKENREFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSKHID 92
          AY+E +GRNDRILAEEETR+LIQRMMSKH D
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMSKHSD 91

[Close]

BLAST of ClCG02G013460 vs. NCBI nr
Match: gi|659123364|ref|XP_008461625.1| (PREDICTED: uncharacterized protein LOC103500185 [Cucumis melo])

HSP 1 Score: 161.4 bits (407), Expect = 7.6e-37
Identity = 79/92 (85.87%), Postives = 89/92 (96.74%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          MADSSAAYIHMVQ+LIE+CLIFHMNK+ECIEALSK+A+I+P+ITSTVWKELEKENREFFE
Sbjct: 1  MADSSAAYIHMVQHLIEKCLIFHMNKDECIEALSKHANISPVITSTVWKELEKENREFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQR-MMSKHID 92
          AY+E +GRNDRILAEEETR+LIQR MMSKH D
Sbjct: 61 AYSECKGRNDRILAEEETRKLIQRMMMSKHSD 92

[Close]

BLAST of ClCG02G013460 vs. NCBI nr
Match: gi|255564072|ref|XP_002523034.1| (PREDICTED: uncharacterized protein LOC8260844 [Ricinus communis])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 63/88 (71.59%), Postives = 80/88 (90.91%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIFHM KEEC+EALSK+A+I P+ITSTVW ELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFHMTKEECMEALSKHANITPVITSTVWNELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSK 89
          AY ES+ ++DR ++EEET Q+IQ+M+S+
Sbjct: 61 AYIESKRKDDR-MSEEETSQMIQKMISE 87

[Close]

BLAST of ClCG02G013460 vs. NCBI nr
Match: gi|743844026|ref|XP_011027103.1| (PREDICTED: uncharacterized protein LOC105127482 [Populus euphratica])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 63/88 (71.59%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIF+M KEEC+EALSK+A+I P+ITSTVWKELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFNMTKEECMEALSKHANIEPVITSTVWKELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSK 89
          AYA+S+ ++DR ++EEET ++IQRM+S+
Sbjct: 61 AYAQSKSKDDR-MSEEETSRVIQRMISQ 87

[Close]

BLAST of ClCG02G013460 vs. NCBI nr
Match: gi|566192088|ref|XP_006378740.1| (hypothetical protein POPTR_0010s21830g [Populus trichocarpa])

HSP 1 Score: 134.0 bits (336), Expect = 1.3e-28
Identity = 63/88 (71.59%), Postives = 82/88 (93.18%), Query Frame = 1


Query: 1  MADSSAAYIHMVQNLIERCLIFHMNKEECIEALSKYAHINPIITSTVWKELEKENREFFE 60
          M DSSA+YIHMVQ+LIE+CLIF+M KEEC+EALSK+A+I P+ITSTVWKELEKEN+EFFE
Sbjct: 1  MGDSSASYIHMVQHLIEKCLIFNMTKEECMEALSKHANIEPVITSTVWKELEKENKEFFE 60

Query: 61 AYAESRGRNDRILAEEETRQLIQRMMSK 89
          AYA+S+ ++DR ++EEET ++IQRM+S+
Sbjct: 61 AYAQSKSKDDR-MSEEETSRVIQRMISQ 87

The following BLAST results are available for this feature:

BLAST of ClCG02G013460 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KQ71_CUCSA	1.6e-38	87.91	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G179770 PE=4 SV=1	[more]
U5G530_POPTR	9.0e-29	71.59	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s21830g PE=4 SV=1	[more]
B9SAL5_RICCO	9.0e-29	71.59	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1103690 PE=4 SV=1	[more]
W9R2B2_9ROSA	3.4e-28	71.26	Uncharacterized protein OS=Morus notabilis GN=L484_025422 PE=4 SV=1	[more]
A0A0A0KU49_CUCSA	5.9e-28	71.26	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505220 PE=4 SV=1	[more]

BLAST of ClCG02G013460 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G55240.1	2.1e-29	67.05	Plant protein 1589 of unknown function	[more]
AT3G28990.1	1.3e-23	61.90	Plant protein 1589 of unknown function	[more]
AT5G02580.1	3.3e-22	56.47	Plant protein 1589 of unknown function	[more]
AT3G10250.1	9.0e-12	55.56	Plant protein 1589 of unknown function	[more]
AT5G04090.2	9.0e-12	55.56	Plant protein 1589 of unknown function	[more]

BLAST of ClCG02G013460 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449459944\|ref\|XP_004147706.1\|	2.4e-38	87.91	PREDICTED: uncharacterized protein LOC101203417 [Cucumis sativus]	[more]
gi\|659123364\|ref\|XP_008461625.1\|	7.6e-37	85.87	PREDICTED: uncharacterized protein LOC103500185 [Cucumis melo]	[more]
gi\|255564072\|ref\|XP_002523034.1\|	1.3e-28	71.59	PREDICTED: uncharacterized protein LOC8260844 [Ricinus communis]	[more]
gi\|743844026\|ref\|XP_011027103.1\|	1.3e-28	71.59	PREDICTED: uncharacterized protein LOC105127482 [Populus euphratica]	[more]
gi\|566192088\|ref\|XP_006378740.1\|	1.3e-28	71.59	hypothetical protein POPTR_0010s21830g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR006476	CHP01589_pln

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0032502	developmental process
biological_process	GO:0006635	fatty acid beta-oxidation
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016829	lyase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG02G013460.1	ClCG02G013460.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006476	Conserved hypothetical protein CHP01589, plant	PFAM	PF09713	A_thal_3526	coord: 12..62 score: 8.5
IPR006476	Conserved hypothetical protein CHP01589, plant	TIGRFAMs	TIGR01589	TIGR01589	coord: 9..63 score: 1.6
None	No IPR available	PANTHER	PTHR31871	FAMILY NOT NAMED	coord: 1..88 score: 2.3
None	No IPR available	PANTHER	PTHR31871:SF10	GENOMIC DNA, CHROMOSOME 3, TAC CLONE:K5K13	coord: 1..88 score: 2.3

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG02G013460	Csa5G179770	Cucumber (Chinese Long) v2	cuwcgB380
ClCG02G013460	MELO3C023827	Melon (DHL92) v3.5.1	mewcgB056
ClCG02G013460	Cla020114	Watermelon (97103) v1	wcgwmB197
ClCG02G013460	Cla97C04G075200	Watermelon (97103) v2	wcgwmbB158
ClCG02G013460	Cla97C02G039130	Watermelon (97103) v2	wcgwmbB138
ClCG02G013460	Bhi03G001249	Wax gourd	wcgwgoB312
ClCG02G013460	CSPI05G09280	Wild cucumber (PI 183967)	cpiwcgB398
ClCG02G013460	CSPI04G14310	Wild cucumber (PI 183967)	cpiwcgB305
ClCG02G013460	Cucsa.165620	Cucumber (Gy14) v1	cgywcgB290
ClCG02G013460	CmaCh04G002350	Cucurbita maxima (Rimu)	cmawcgB642
ClCG02G013460	CmaCh04G012100	Cucurbita maxima (Rimu)	cmawcgB641
ClCG02G013460	CmoCh04G012840	Cucurbita moschata (Rifu)	cmowcgB643
ClCG02G013460	CmoCh04G002410	Cucurbita moschata (Rifu)	cmowcgB644
ClCG02G013460	Cp4.1LG01g10650	Cucurbita pepo (Zucchini)	cpewcgB376
ClCG02G013460	Cp4.1LG01g04700	Cucurbita pepo (Zucchini)	cpewcgB377
ClCG02G013460	CsGy5G006640	Cucumber (Gy14) v2	cgybwcgB347
ClCG02G013460	MELO3C023827.2	Melon (DHL92) v3.6.1	medwcgB055
ClCG02G013460	CsaV3_4G024650	Cucumber (Chinese Long) v3	cucwcgB307
ClCG02G013460	CsaV3_5G006690	Cucumber (Chinese Long) v3	cucwcgB402

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG02G013460	Wax gourd	wcgwgoB319
ClCG02G013460	Bottle gourd (USVL1VR-Ls)	lsiwcgB275
ClCG02G013460	Silver-seed gourd	carwcgB0838