Cla019879 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019879
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	RING zinc finger protein-like protein (Fragment) (AHRD V1 -- Q6GX29_CUCME); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
Location	Chr2 : 26249878 .. 26253652 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAATTTCAGAGCACTGCGCCAATGGAGGAGAAGACAAGCAGTTCCTCTTCCGACGATACGAACCCTTGCCCGATCTGCCTCGGACCCATTATTCAACCTTCCTATCTTGACAAATGCTTCCGTACGTCTTTATTTCTCTCAATCTGATCCTTCTTTCGTTTTTCTTGAATTTTCCTGCCATCCAAACAGAAATTGATTAAGAAAAATTGTTTGTTTGTATGAATTGGGGTTTCCTTTTTCCGATTCTTCTTGTGTCCCACTTGGAAATAACCCTTTATGTGTTACTGTATCATCAGAAGAATCACTCTGTTGTCCTTTTTGGGGATTTCAGCTTTTAGCTCTTCCCCAAATTTCAAGATTTCTGCCACTGTTCTTCATATTCATGGACGAAAAATTGTTTGATGATGATATTATCTTGAAATACACAATTAACTGGATTCATTTGGGATAAAGATAAACTAGTTAATTCTTTAGCTTTGAGTGGACATAAAGTTCTTCTGGAGATGCTTAAATTGATCCAATTTACTCAGTTCTTTGGTGGTGTATGTTTTCAGCAAGCCATTTGGAGTGTTTATAATGACACCTTCTTCTTCGAGGAAAACAGATACAGCAGCGAGAATGCTTTAGATTTCTTTGATATGTTGAATGTAACCATTGATACCATCTTTGAGATGAATATGTTATGTCAGGGCTTGAATATTAGTTTTGATTATGTTGTGCAATGCATGGAAAATCAAAATGAAAGAGGAAATATCACATACCTTAAGACTTTACATTTGCTATCATGTTGATTGCCAGTAATTTCCAAAGTTTAAGCCTTAAAGTTTGGGTGAATTTGATCATTTGATTAACTCTAAAGAATCTATTTGTTCATTCATGTTAAGTACAACATACTATTTAGAAAGAAAGGGGAAAAAAAAAAAAAAAAGGAATGTCGATAAACTTTGTTGAGGAGTTCGAATGGTTTTAGCTTTTAACTCTTTTTCTCTGTCTTGCAGATAAATTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCACTCCTGCACACTTTCGTCCATTAAATGTCCTTTATGCAAGGTTCAATTTTCCTTCCCTTGTTAATCTTGTTTTATTGTAGCATTCTGTACTTTTTGTATTCCATTTCTTATTTTCTTATAATTAATCACCAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACACTATTTCCAAAGACATTATGTTGATCGGGATTTTCAGGATAGGTATCTTCCTGTTGGTACTTCCCCTAGATTTTCTTTTCCTATTTTCTCTGCTTTAATTGACTGTGGTTTATAATCGACGTTATTTTCAGCTTTATCTTATCAAAAGCTCACAAGTATAGATTACAGTGCTATTATACGGAACCAGGTTAGTCTTTTGTTTATTGTTCAACTCATTATGTGATGATGCTCCGACATTTACATCCGGTTACTTGGGTTTATGAATTTCCCTAATTGTCAACATGTAGGTTTCTTGGATGAAATATTCGATGTAAAGAGGTACTGGAAGTTACGGAAATATCTCCAGGCAAACCAGTGGCTTGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGTTCCTGTCTTAGTTTCTTACATCATATTTGTATCTTCTATGGAATACTGCTTCCTTGGCCCTTTTTCTTTTCTTGGAGAATTGTTTACATCCTAATCAAACAACATTCTCAAGACCAAATAGGCAGGTACGAAAGGGAGAAAGCTCTCCATTCCTCATTCCTACGTTCTCCTACGGTCGGATTCTTGGGGAAAAGAATTCTATCACAGCACCTAGTAGTTAATGAAATTCTTAATTCCAAAATGAACTCAATATCAAATAACAAAAAATGGGATGCTGTATAAAAAGGTAGGAGAGGGATGGGGTTTCTCCCATTTGTGGCATAGTGTCCCCTAGGAGGTTTCGTCTCCTCTAAGGAGGGTATCTGCTGATTGAGGATTTGAGAACTCTATTTTATTTCAATGGTGAGGAAAACTATGTGTATTGTGGAAGTGGCAAGATGAGGTAAAGATGCGTCGCTTTTACCATGAGGATTTGAGAACTCTGTTTAGTAGAGAAGGGATATTGTCAAAAATAACTCTTAAATGTTCTCATCTGTCACAACTAGCACCCTTTTGGAGAACTCGTTGGAATAGTTTTTCTCGACCCTTCCCGGTTGAGATCAATCCCGAGATTCGAATAAAATTTTAACTTCGTTTCATCATACATCCAAACGATCGATTTTTTTGGCTTTCTTTGTGGAATTTCAGACAAGACGAAGACTGAGATTGTATATAATCTTCCTGAATCTTATGTAATCTTTCCCAAGTCTTACATAATTTTTTCAAATCTTCTTCGAATTTTTGTTTCAAACATTTGTCTGAATTGGGAATTTCCAAATGGATTGACGAATTTCTCATTGTTTCCCTCTTCAAGCAATTGTGCAGAAGAAACAGATCAAGCCGATCGCTGTGTGGTTTCTTCTTTGGAAAAGAAGTTAAATTGTGATAAAGATTAAATTTTGAGAAAGACTACATATGATCCCAGTCTTCATCTTGACGAAGATTCTATCAAGAAAGTCCAAAAATATTGATGGCTTGGATGGGTGATGAGAAAAATTAACTTTTATTTGAATCTCAAGGTCAATCTTGGCTGGGAAGGATTGAGAAAGCTATTATAACGAATTGCCAAAAAGGGTGCTGAAGGTAAAAGATGGAAACTTTTTGGGGTTATTTCTGATAATTTCCCTAGTATATATATGATACCATTTCTTTGGCATAGTTTCTTGATTTATCCATTCTATTTCTCTGCAATACAGTTCATTGTGGATGATGACTGATAGTGTCTCCTTCCTTTTACAGGAAGAAGATGTTGACATAATTATGCACCACCTTCTTGGTTTAATTTATTCATTTTGTAGTAGGTAATAACATTCCGTTATTGCATTATATACTTTGGTCTAATAAAAAAATTGGTTAAAAGACAACTTTCATCGATAGTTCCTAAACTTTAACAATTTAGTCCTTGCATTTCTCAACTTTGTAATAATTTAGTATCCTTATCATGAAAATTATTGTCAAAATTAATGGAATTTCTTACCCATGTAAATCAATAAACTAATTAGGGGCCAAATGTATCGATAAACTACAAAAACTAAGTTGTTACATGCTTAGTTTGATGAGATTTTCATGGTAGGAACTAAATTATTTTGATAAGTACCGAGATTAAATTATTATGTACTAAAGTTCAATGACTAAATTGTTACAAATTCAAAAGTATGAGCACAATTGTTACAAACCAAAGTTACGGGACTGATATTTATTTATTTATTATTATTATCTTTTTTTATCCTTATCCACATGAATGTAAATATGGATGATATGATACCTGATTACACTCTGAAACATGCTTCTTGTTCTATGTCTTCCCTCAAAGAAATGAACCTAGGTATCAAACAGAAACTCCTGAACTGAAGAGAGAAAGGTTTAGCCGCGGGATCCTTGATGCGGCAAAGCCATTCCTGTCAGCAAGAGCAGACCGGTTCGTGCTTGAGTTGGAGCTGTTTCTAGTTTCAGGTTTGAACATTGAAGCCTATGATTCGGTTTACTTGCAACGGTTGGGTTGGAATGAGCCTGTAGTGCCGAGTGTGGCTATCAAAGAAGATCTTGGACTCAAACCTGTAACTCCATACTTGTATATCTTTGAATATGACCCTGATGATGGTGACTAA

mRNA sequence

ATGGAATTTCAGAGCACTGCGCCAATGGAGGAGAAGACAAGCAGTTCCTCTTCCGACGATACGAACCCTTGCCCGATCTGCCTCGGACCCATTATTCAACCTTCCTATCTTGACAAATGCTTCCATAAATTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCACTCCTGCACACTTTCGTCCATTAAATGTCCTTTATGCAAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACACTATTTCCAAAGACATTATGTTGATCGGGATTTTCAGGATAGCTTTATCTTATCAAAAGCTCACAAGTATAGATTACAGTGCTATTATACGGAACCAGGTTTCTTGGATGAAATATTCGATGTAAAGAGGTACTGGAAGTTACGGAAATATCTCCAGGCAAACCAGTGGCTTGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGAAGAAGATGTTGACATAATTATGCACCACCTTCTTGGTTTAATTTATTCATTTTGTAGTAGAAATGAACCTAGGTATCAAACAGAAACTCCTGAACTGAAGAGAGAAAGGTTTAGCCGCGGGATCCTTGATGCGGCAAAGCCATTCCTGTCAGCAAGAGCAGACCGGTTCGTGCTTGAGTTGGAGCTGTTTCTAGTTTCAGGTTTGAACATTGAAGCCTATGATTCGGTTTACTTGCAACGGTTGGGTTGGAATGAGCCTGTAGTGCCGAGTGTGGCTATCAAAGAAGATCTTGGACTCAAACCTGTAACTCCATACTTGTATATCTTTGAATATGACCCTGATGATGGTGACTAA

Coding sequence (CDS)

ATGGAATTTCAGAGCACTGCGCCAATGGAGGAGAAGACAAGCAGTTCCTCTTCCGACGATACGAACCCTTGCCCGATCTGCCTCGGACCCATTATTCAACCTTCCTATCTTGACAAATGCTTCCATAAATTTTGTTACAATTGCATTGTACAATGGACCAAAGTGGTTTCTGGGAAGCACTCCTGCACACTTTCGTCCATTAAATGTCCTTTATGCAAGACAGAAAGTTCTTCTATAATACATGGATTAGATGGACACTATTTCCAAAGACATTATGTTGATCGGGATTTTCAGGATAGCTTTATCTTATCAAAAGCTCACAAGTATAGATTACAGTGCTATTATACGGAACCAGGTTTCTTGGATGAAATATTCGATGTAAAGAGGTACTGGAAGTTACGGAAATATCTCCAGGCAAACCAGTGGCTTGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGAAGAAGATGTTGACATAATTATGCACCACCTTCTTGGTTTAATTTATTCATTTTGTAGTAGAAATGAACCTAGGTATCAAACAGAAACTCCTGAACTGAAGAGAGAAAGGTTTAGCCGCGGGATCCTTGATGCGGCAAAGCCATTCCTGTCAGCAAGAGCAGACCGGTTCGTGCTTGAGTTGGAGCTGTTTCTAGTTTCAGGTTTGAACATTGAAGCCTATGATTCGGTTTACTTGCAACGGTTGGGTTGGAATGAGCCTGTAGTGCCGAGTGTGGCTATCAAAGAAGATCTTGGACTCAAACCTGTAACTCCATACTTGTATATCTTTGAATATGACCCTGATGATGGTGACTAA

Protein sequence

MEFQSTAPMEEKTSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLCKTESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYTEPGFLDEIFDVKRYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLIYSFCSRNEPRYQTETPELKRERFSRGILDAAKPFLSARADRFVLELELFLVSGLNIEAYDSVYLQRLGWNEPVVPSVAIKEDLGLKPVTPYLYIFEYDPDDGD

Homology

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BLAST of Cla019879 vs. Swiss-Prot
Match: TOPRS_MOUSE (E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 2.8e-10
Identity = 35/112 (31.25%), Postives = 54/112 (48.21%), Query Frame = 1


Query: 6   TAPMEEKTSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLS 65
           T+ +++   + +S D+  CPICL      SYLD+C HKFC+ C+ +W+K          +
Sbjct: 87  TSKLQQTVPADASPDSK-CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------N 146

Query: 66  SIKCPLCKTESSSIIHGLDGHYFQRHYVDR-DFQDSFILSKAHKYRLQCYYT 117
             +CPLCK    SI H +      + YV R  +  SF   +  ++R +   T
Sbjct: 147 KAECPLCKQPFDSIFHSVRAEDDFKEYVLRPSYNGSFTNPEVRRFRYRTTMT 187

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BLAST of Cla019879 vs. Swiss-Prot
Match: TOPRS_HUMAN (E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 4.7e-10
Identity = 33/111 (29.73%), Postives = 53/111 (47.75%), Query Frame = 1


Query: 6   TAPMEEKTSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLS 65
           T+ +++   + +S D+  CPICL      SYLD+C HKFC+ C+ +W+K          +
Sbjct: 86  TSKLQQTVPADASPDSK-CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK----------N 145

Query: 66  SIKCPLCKTESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYT 117
             +CPLCK    SI H +      + YV R   +   ++   ++R +   T
Sbjct: 146 KAECPLCKQPFDSIFHSVRAEDDFKEYVLRPSYNGSFVTPDRRFRYRTTLT 185

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BLAST of Cla019879 vs. TrEMBL
Match: A0A0A0LLN5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021620 PE=4 SV=1)

HSP 1 Score: 496.9 bits (1278), Expect = 1.6e-137
Identity = 237/274 (86.50%), Postives = 253/274 (92.34%), Query Frame = 1


Query: 1   MEFQSTAPMEEKTSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           ME QSTA ME +T +S+SD TNPCPICLGPI Q SYLDKCFH FCYNCIVQWTKVVSGK 
Sbjct: 6   MELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKR 65

Query: 61  SCTLSSIKCPLCKTESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTESSSIIHGLDGH FQRHYV+ DFQDSFILSKAH+YRLQCYYTEPGF
Sbjct: 66  SCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGF 125

Query: 121 LDEIFDVKRYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLIYSFCSRNEP 180
           L++IFDV+RYWKL+KYLQANQWLEVWLKRELQALIQEEDVDIIMHH LGLI SF  RNEP
Sbjct: 126 LNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFLGLINSFFRRNEP 185

Query: 181 RYQTETPELKRERFSRGILDAAKPFLSARADRFVLELELFLVSGLNIEAYDSVYLQRLGW 240
            YQTETPELKR+RFS+ ILDAAKPFLSARADRF+LELELFL SGLNIEAYDSVYLQRLGW
Sbjct: 186 EYQTETPELKRKRFSQTILDAAKPFLSARADRFILELELFLASGLNIEAYDSVYLQRLGW 245

Query: 241 NEPVVPSVAIKEDLGLKPVTPYLYIFEYDPDDGD 275
           N+P+VPSVA +EDLGLK VTPYLYIF+ DPDDGD
Sbjct: 246 NKPIVPSVANEEDLGLKSVTPYLYIFDCDPDDGD 279

[Close]

BLAST of Cla019879 vs. TrEMBL
Match: M5WCB8_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009982mg PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 5.0e-99
Identity = 176/267 (65.92%), Postives = 215/267 (80.52%), Query Frame = 1


Query: 9   MEEKTSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIK 68
           + + TSSSSS+D+NPCPICLGPIIQ SYLDKCFHKFCYNCI++WTKVV+ K SC  +S+K
Sbjct: 6   VNKNTSSSSSEDSNPCPICLGPIIQDSYLDKCFHKFCYNCILRWTKVVAHKQSCLPTSVK 65

Query: 69  CPLCKTESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYTEPGFLDEIFDVK 128
           CPLCKTE+ SIIHG DG  FQ+HY+++D    FILSK HKYRLQCYYTEPGFL++IFDV 
Sbjct: 66  CPLCKTENLSIIHGYDGSSFQKHYINQD--SGFILSKDHKYRLQCYYTEPGFLNDIFDVL 125

Query: 129 RYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLIYSFCSRNEPRYQTETPE 188
           RYWK  KYLQ N+WL+ WL+RE+QAL+QEEDVDIIMHH+ GLI+S  +R+E + QT+TPE
Sbjct: 126 RYWKSHKYLQPNRWLQSWLRREIQALMQEEDVDIIMHHIHGLIHSSLTRHEQKGQTKTPE 185

Query: 189 LKRERFSRGILDAAKPFLSARADRFVLELELFLVSGLNIEAYDSVYLQRLGWNEPVVPSV 248
            K+  F   I DAA+PFL+AR DRFV E+ELFL SGLNIEAYD+V +QRLGW+ P V + 
Sbjct: 186 AKQREFQESISDAARPFLAARTDRFVNEVELFLASGLNIEAYDAVCMQRLGWSAPGVTTE 245

Query: 249 AIKEDLG-LKPVTPYLYIFEYDPDDGD 275
             + +L   +PV PYLYIF Y+ D  D
Sbjct: 246 PTEGELAEHRPVIPYLYIF-YESDCSD 269

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BLAST of Cla019879 vs. TrEMBL
Match: A0A067F053_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045854mg PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.2e-97
Identity = 168/263 (63.88%), Postives = 206/263 (78.33%), Query Frame = 1


Query: 13  TSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLC 72
           +SS SS++ NPCPICLGP+++ SYLDKCFHKFCYNCIV WTKVV+ KHS  LSS+KCPLC
Sbjct: 10  SSSCSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69

Query: 73  KTESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYTEPGFLDEIFDVKRYWK 132
           KTE+ SIIHG DG YFQR+Y+ + F DSF  SKAH+YRLQ YYTEPG L+++F+V RYWK
Sbjct: 70  KTENVSIIHGYDGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYTEPGILNDVFNVSRYWK 129

Query: 133 LRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLIYSFCSRNEPRYQTETPELKRE 192
            RKYLQ+NQWL+ WL+RE+QA++QEEDV+I++HH+LG++ SF  RN+ R Q  TPE K E
Sbjct: 130 SRKYLQSNQWLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEE 189

Query: 193 RFSRGILDAAKPFLSARADRFVLELELFLVSGLNIEAYDSVYLQRLGWNEP-VVPSVAIK 252
            F   + DAA+PFL AR DRFV E++LFL S LNIEAYD+VY+QRLGWN P V       
Sbjct: 190 DFKALVSDAARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPRVTMESGEG 249

Query: 253 EDLGLKPVTPYLYIFEYDPDDGD 275
           E  G  PV PYL+IF+ D D  D
Sbjct: 250 ETSGQTPVIPYLHIFDEDSDGTD 272

[Close]

BLAST of Cla019879 vs. TrEMBL
Match: V4V3R0_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002145mg PE=4 SV=1)

HSP 1 Score: 364.4 bits (934), Expect = 1.2e-97
Identity = 168/263 (63.88%), Postives = 206/263 (78.33%), Query Frame = 1


Query: 13  TSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLC 72
           +SS SS++ NPCPICLGP+++ SYLDKCFHKFCYNCIV WTKVV+ KHS  LSS+KCPLC
Sbjct: 10  SSSCSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69

Query: 73  KTESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYTEPGFLDEIFDVKRYWK 132
           KTE+ SIIHG DG YFQR+Y+ + F DSF  SKAH+YRLQ YYTEPG L+++F+V RYWK
Sbjct: 70  KTENVSIIHGYDGTYFQRNYISQIFGDSFFFSKAHRYRLQSYYTEPGILNDVFNVSRYWK 129

Query: 133 LRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLIYSFCSRNEPRYQTETPELKRE 192
            RKYLQ+NQWL+ WL+RE+QA++QEEDV+I++HH+LG++ SF  RN+ R Q  TPE K E
Sbjct: 130 SRKYLQSNQWLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNKQRCQMGTPETKEE 189

Query: 193 RFSRGILDAAKPFLSARADRFVLELELFLVSGLNIEAYDSVYLQRLGWNEP-VVPSVAIK 252
            F   + DAA+PFL AR DRFV E++LFL S LNIEAYD+VY+QRLGWN P V       
Sbjct: 190 DFKALVSDAARPFLMARTDRFVNEMQLFLASALNIEAYDAVYMQRLGWNTPRVTMESGEG 249

Query: 253 EDLGLKPVTPYLYIFEYDPDDGD 275
           E  G  PV PYL+IF+ D D  D
Sbjct: 250 ETSGQTPVIPYLHIFDEDSDGTD 272

[Close]

BLAST of Cla019879 vs. TrEMBL
Match: F6HYY8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0128g00310 PE=4 SV=1)

HSP 1 Score: 358.2 bits (918), Expect = 8.8e-96
Identity = 161/261 (61.69%), Postives = 200/261 (76.63%), Query Frame = 1


Query: 14  SSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLCK 73
           + S S+  NPCPICLGP+++ SYLD+CFHKFCY+CIV+WTKVV+ KH    S+IKCP CK
Sbjct: 20  NDSPSEGPNPCPICLGPVVKDSYLDQCFHKFCYDCIVRWTKVVASKHCRLSSTIKCPFCK 79

Query: 74  TESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYTEPGFLDEIFDVKRYWKL 133
           TE+ SI+HG DG  FQ+HY+++DF  SF  SKAHKYRLQCYYTEPG L++ F+V RYWK 
Sbjct: 80  TENFSIVHGYDGSSFQQHYINQDFGKSFSFSKAHKYRLQCYYTEPGILNDKFNVSRYWKF 139

Query: 134 RKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLIYSFCSRNEPRYQTETPELKRER 193
            KY Q NQWL+ WL+RE+QALIQEEDVDII+HH+LG++ S   R E + QT TPE K+E 
Sbjct: 140 HKYRQPNQWLQAWLRREIQALIQEEDVDIIVHHILGVLDSVIKRTEQKGQTITPERKQEE 199

Query: 194 FSRGILDAAKPFLSARADRFVLELELFLVSGLNIEAYDSVYLQRLGWNEPVVPSVAIKED 253
           F   + DAA+PFL+ R DRFV E+ELFL SGLNIEAYD VYLQ+LGW  P+  +  ++E 
Sbjct: 200 FKASVSDAARPFLTGRTDRFVNEVELFLASGLNIEAYDEVYLQQLGWTNPMATTEGVEEQ 259

Query: 254 LGLKPVTPYLYIFEYDPDDGD 275
            G   V PYLY+F+YD D  D
Sbjct: 260 NGHTHVVPYLYLFDYDSDGTD 280

[Close]

BLAST of Cla019879 vs. NCBI nr
Match: gi|778666760|ref|XP_004139186.2| (PREDICTED: uncharacterized protein LOC101211581 isoform X1 [Cucumis sativus])

HSP 1 Score: 496.9 bits (1278), Expect = 2.3e-137
Identity = 237/274 (86.50%), Postives = 253/274 (92.34%), Query Frame = 1


Query: 1   MEFQSTAPMEEKTSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           ME QSTA ME +T +S+SD TNPCPICLGPI Q SYLDKCFH FCYNCIVQWTKVVSGK 
Sbjct: 6   MELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKR 65

Query: 61  SCTLSSIKCPLCKTESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTESSSIIHGLDGH FQRHYV+ DFQDSFILSKAH+YRLQCYYTEPGF
Sbjct: 66  SCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGF 125

Query: 121 LDEIFDVKRYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLIYSFCSRNEP 180
           L++IFDV+RYWKL+KYLQANQWLEVWLKRELQALIQEEDVDIIMHH LGLI SF  RNEP
Sbjct: 126 LNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFLGLINSFFRRNEP 185

Query: 181 RYQTETPELKRERFSRGILDAAKPFLSARADRFVLELELFLVSGLNIEAYDSVYLQRLGW 240
            YQTETPELKR+RFS+ ILDAAKPFLSARADRF+LELELFL SGLNIEAYDSVYLQRLGW
Sbjct: 186 EYQTETPELKRKRFSQTILDAAKPFLSARADRFILELELFLASGLNIEAYDSVYLQRLGW 245

Query: 241 NEPVVPSVAIKEDLGLKPVTPYLYIFEYDPDDGD 275
           N+P+VPSVA +EDLGLK VTPYLYIF+ DPDDGD
Sbjct: 246 NKPIVPSVANEEDLGLKSVTPYLYIFDCDPDDGD 279

[Close]

BLAST of Cla019879 vs. NCBI nr
Match: gi|659070388|ref|XP_008454833.1| (PREDICTED: uncharacterized protein LOC103495144 [Cucumis melo])

HSP 1 Score: 488.4 bits (1256), Expect = 8.1e-135
Identity = 234/272 (86.03%), Postives = 251/272 (92.28%), Query Frame = 1


Query: 1   MEFQSTAPMEEKTSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           ME QS A ME KTS+S+SD T+PCPICLGPI Q SYLDKCFH FCYNCIVQWTKVVSGK 
Sbjct: 6   MELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKR 65

Query: 61  SCTLSSIKCPLCKTESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYTEPGF 120
           SC LSSIKCPLCKTESSSIIHGLDGH+FQRHYV+ DFQDSFILSKAHKYRLQCYYTEPGF
Sbjct: 66  SCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYYTEPGF 125

Query: 121 LDEIFDVKRYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLIYSFCSRNEP 180
           L++IFDV+RYWKL+KYLQANQWLEVWLKRELQALIQEEDVDIIMHH +GLI SF  RNEP
Sbjct: 126 LNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFFRRNEP 185

Query: 181 RYQTETPELKRERFSRGILDAAKPFLSARADRFVLELELFLVSGLNIEAYDSVYLQRLGW 240
           +YQTETPELKR+RFS+ ILDAAKPFLSARADRF+LELELFL SGLNIEAYDSVYLQRLGW
Sbjct: 186 KYQTETPELKRKRFSQTILDAAKPFLSARADRFMLELELFLASGLNIEAYDSVYLQRLGW 245

Query: 241 NEPVVPSVAIKEDLGLKPVTPYLYIFEYDPDD 273
           NEP+V SVA +EDLGLK VTPYLYIF+ DPDD
Sbjct: 246 NEPIVLSVANEEDLGLKSVTPYLYIFDNDPDD 277

[Close]

BLAST of Cla019879 vs. NCBI nr
Match: gi|595827598|ref|XP_007205719.1| (hypothetical protein PRUPE_ppa009982mg [Prunus persica])

HSP 1 Score: 369.0 bits (946), Expect = 7.1e-99
Identity = 176/267 (65.92%), Postives = 215/267 (80.52%), Query Frame = 1


Query: 9   MEEKTSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIK 68
           + + TSSSSS+D+NPCPICLGPIIQ SYLDKCFHKFCYNCI++WTKVV+ K SC  +S+K
Sbjct: 6   VNKNTSSSSSEDSNPCPICLGPIIQDSYLDKCFHKFCYNCILRWTKVVAHKQSCLPTSVK 65

Query: 69  CPLCKTESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYTEPGFLDEIFDVK 128
           CPLCKTE+ SIIHG DG  FQ+HY+++D    FILSK HKYRLQCYYTEPGFL++IFDV 
Sbjct: 66  CPLCKTENLSIIHGYDGSSFQKHYINQD--SGFILSKDHKYRLQCYYTEPGFLNDIFDVL 125

Query: 129 RYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLIYSFCSRNEPRYQTETPE 188
           RYWK  KYLQ N+WL+ WL+RE+QAL+QEEDVDIIMHH+ GLI+S  +R+E + QT+TPE
Sbjct: 126 RYWKSHKYLQPNRWLQSWLRREIQALMQEEDVDIIMHHIHGLIHSSLTRHEQKGQTKTPE 185

Query: 189 LKRERFSRGILDAAKPFLSARADRFVLELELFLVSGLNIEAYDSVYLQRLGWNEPVVPSV 248
            K+  F   I DAA+PFL+AR DRFV E+ELFL SGLNIEAYD+V +QRLGW+ P V + 
Sbjct: 186 AKQREFQESISDAARPFLAARTDRFVNEVELFLASGLNIEAYDAVCMQRLGWSAPGVTTE 245

Query: 249 AIKEDLG-LKPVTPYLYIFEYDPDDGD 275
             + +L   +PV PYLYIF Y+ D  D
Sbjct: 246 PTEGELAEHRPVIPYLYIF-YESDCSD 269

[Close]

BLAST of Cla019879 vs. NCBI nr
Match: gi|645222229|ref|XP_008246492.1| (PREDICTED: uncharacterized protein LOC103344657 [Prunus mume])

HSP 1 Score: 365.9 bits (938), Expect = 6.0e-98
Identity = 174/267 (65.17%), Postives = 213/267 (79.78%), Query Frame = 1


Query: 9   MEEKTSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIK 68
           + + TSSSSS+D+NPCPICLGPIIQ SYLDKCFHKFCYNCI++WTKVV+ K SC  +S+K
Sbjct: 6   VNKNTSSSSSEDSNPCPICLGPIIQDSYLDKCFHKFCYNCILRWTKVVAHKQSCLPTSVK 65

Query: 69  CPLCKTESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYTEPGFLDEIFDVK 128
           CPLCKT + SIIHG DG  FQ+HY+++D    FILSK HKYRLQCYYTEPGFL++IFDV 
Sbjct: 66  CPLCKTANLSIIHGYDGSSFQKHYINQD--SGFILSKDHKYRLQCYYTEPGFLNDIFDVL 125

Query: 129 RYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLIYSFCSRNEPRYQTETPE 188
           RYWK  KYLQ N+WL+ WL+RE+QAL+QEEDVDIIMHH+ GLI+S  +R+E + QT+TPE
Sbjct: 126 RYWKSHKYLQPNRWLQSWLRREIQALMQEEDVDIIMHHIHGLIHSSLTRHEQKGQTKTPE 185

Query: 189 LKRERFSRGILDAAKPFLSARADRFVLELELFLVSGLNIEAYDSVYLQRLGWNEPVVPSV 248
            K+  F   I DAA+PFL+AR DRFV E+E+FL SGLNIEAYD+V +QRLGW+ P V + 
Sbjct: 186 AKQREFQESISDAARPFLAARTDRFVNEVEIFLASGLNIEAYDAVCMQRLGWSAPGVTTE 245

Query: 249 AIKEDLG-LKPVTPYLYIFEYDPDDGD 275
             + +L   +P  PYLYIF YD D  D
Sbjct: 246 PTEGELAEHRPAIPYLYIF-YDSDCSD 269

[Close]

BLAST of Cla019879 vs. NCBI nr
Match: gi|778666763|ref|XP_011648804.1| (PREDICTED: uncharacterized protein LOC101211581 isoform X2 [Cucumis sativus])

HSP 1 Score: 364.8 bits (935), Expect = 1.3e-97
Identity = 175/200 (87.50%), Postives = 188/200 (94.00%), Query Frame = 1


Query: 75  ESSSIIHGLDGHYFQRHYVDRDFQDSFILSKAHKYRLQCYYTEPGFLDEIFDVKRYWKLR 134
           ESSSIIHGLDGH FQRHYV+ DFQDSFILSKAH+YRLQCYYTEPGFL++IFDV+RYWKL+
Sbjct: 6   ESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGFLNDIFDVQRYWKLQ 65

Query: 135 KYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLIYSFCSRNEPRYQTETPELKRERF 194
           KYLQANQWLEVWLKRELQALIQEEDVDIIMHH LGLI SF  RNEP YQTETPELKR+RF
Sbjct: 66  KYLQANQWLEVWLKRELQALIQEEDVDIIMHHFLGLINSFFRRNEPEYQTETPELKRKRF 125

Query: 195 SRGILDAAKPFLSARADRFVLELELFLVSGLNIEAYDSVYLQRLGWNEPVVPSVAIKEDL 254
           S+ ILDAAKPFLSARADRF+LELELFL SGLNIEAYDSVYLQRLGWN+P+VPSVA +EDL
Sbjct: 126 SQTILDAAKPFLSARADRFILELELFLASGLNIEAYDSVYLQRLGWNKPIVPSVANEEDL 185

Query: 255 GLKPVTPYLYIFEYDPDDGD 275
           GLK VTPYLYIF+ DPDDGD
Sbjct: 186 GLKSVTPYLYIFDCDPDDGD 205

The following BLAST results are available for this feature:

BLAST of Cla019879 vs. Swiss-Prot


Match Name	E-value	Identity	Description
TOPRS_MOUSE	2.8e-10	31.25	E3 ubiquitin-protein ligase Topors OS=Mus musculus GN=Topors PE=1 SV=1	[more]
TOPRS_HUMAN	4.7e-10	29.73	E3 ubiquitin-protein ligase Topors OS=Homo sapiens GN=TOPORS PE=1 SV=1	[more]

BLAST of Cla019879 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LLN5_CUCSA	1.6e-137	86.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_2G021620 PE=4 SV=1	[more]
M5WCB8_PRUPE	5.0e-99	65.92	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa009982mg PE=4 SV=1	[more]
A0A067F053_CITSI	1.2e-97	63.88	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g045854mg PE=4 SV=1	[more]
V4V3R0_9ROSI	1.2e-97	63.88	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10002145mg PE=4 SV=1	[more]
F6HYY8_VITVI	8.8e-96	61.69	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0128g00310 PE=4 SV=...	[more]

BLAST of Cla019879 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778666760\|ref\|XP_004139186.2\|	2.3e-137	86.50	PREDICTED: uncharacterized protein LOC101211581 isoform X1 [Cucumis sativus]	[more]
gi\|659070388\|ref\|XP_008454833.1\|	8.1e-135	86.03	PREDICTED: uncharacterized protein LOC103495144 [Cucumis melo]	[more]
gi\|595827598\|ref\|XP_007205719.1\|	7.1e-99	65.92	hypothetical protein PRUPE_ppa009982mg [Prunus persica]	[more]
gi\|645222229\|ref\|XP_008246492.1\|	6.0e-98	65.17	PREDICTED: uncharacterized protein LOC103344657 [Prunus mume]	[more]
gi\|778666763\|ref\|XP_011648804.1\|	1.3e-97	87.50	PREDICTED: uncharacterized protein LOC101211581 isoform X2 [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS
IPR018957	Znf_C3HC4_RING-type

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding
GO:0046872	metal ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007165	signal transduction
biological_process	GO:0009755	hormone-mediated signaling pathway
biological_process	GO:0008152	metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0046872	metal ion binding
molecular_function	GO:0016874	ligase activity

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU32232	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU36908	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla019879	Cla019879.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU36908	WMU36908	transcribed_cluster
WMU32232	WMU32232	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 24..72 score: 2.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 24..73 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 7..76 score: 9.9
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 40..49 scor
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 24..72 score: 9.
None	No IPR available	PANTHER	PTHR22937	RING FINGER CONTAINING PROTEIN	coord: 7..243 score: 3.7
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 20..80 score: 2.43

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla019879	Cla97C02G041680	Watermelon (97103) v2	wmwmbB316
Cla019879	Csa2G021620	Cucumber (Chinese Long) v2	cuwmB147
Cla019879	MELO3C004279	Melon (DHL92) v3.5.1	mewmB418
Cla019879	ClCG02G015910	Watermelon (Charleston Gray)	wcgwmB197
Cla019879	CSPI02G03810	Wild cucumber (PI 183967)	cpiwmB149
Cla019879	Cucsa.091610	Cucumber (Gy14) v1	cgywmB105
Cla019879	CmaCh05G011480	Cucurbita maxima (Rimu)	cmawmB764
Cla019879	CmoCh05G011590	Cucurbita moschata (Rifu)	cmowmB757
Cla019879	Lsi11G005300	Bottle gourd (USVL1VR-Ls)	lsiwmB107
Cla019879	CsGy2G003900	Cucumber (Gy14) v2	cgybwmB140
Cla019879	MELO3C004279.2	Melon (DHL92) v3.6.1	medwmB407
Cla019879	Carg12894	Silver-seed gourd	carwmB0907
Cla019879	CsaV3_2G005130	Cucumber (Chinese Long) v3	cucwmB159
Cla019879	Bhi05G001654	Wax gourd	wgowmB276

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla019879	Cucurbita maxima (Rimu)	cmawmB170
Cla019879	Cucurbita moschata (Rifu)	cmowmB156
Cla019879	Cucurbita pepo (Zucchini)	cpewmB113
Cla019879	Cucurbita pepo (Zucchini)	cpewmB806
Cla019879	Silver-seed gourd	carwmB0714