Carg12894 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg12894
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase topors
Location	Cucurbita_argyrosperma_scaffold_043 : 1022164 .. 1025964 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CGTTCTCATTGTAAATCCTTGTCGGGAAGGGGCATGGAATTGCAGGGCACTGCGCCATTGGAGATGGAGACAAGCAGTTCCTCTTCCGACGATACGAACCCTTGCCCGATCTGCCTCGGACCCATAATTCAACCTTCCTATCTCGACAAATGCTTCCGTACGTCCTTTTTTTCTCTCAATCTGATTGTTCTTTCGTATTTCTTGAATTTTCCGGACATCTGAACGGATAATTAATTTAGAAATTTTGTTTGTTTGTATGAATTAGGGTTTTTCTTTTTCGTGTTCTTATGGTGATCGACTTGAAATTATCCCTTTATGTGTTACTGTATCATCAAAAGAACCACTCCGTTGTCCTTTTAGGGGATTTCGGCTTTTAGCTCTCCCCAGTTATTGAGGTTTCCGCTACTGTTCTTTATATTCGATGGAAGAAACTGATGATTATATTATCATGAAAGATAGAATTAACTGGTTTCATTGGGGATAAAGATAAATTAGCTAATTCTGTAGCTTTGGAGTGGACTTAAAGTTTTTCTGGAGATGCTCTATTCGATCCAATATTCAGTTCTTTAGTGATGTACGCTTTAGGCAAGCAATTTGTAGCGTATATAATGACATCTTCCTGTTAGAGAAAAACAGAAACAGCTGCGAGAGTGCTATGGATTTGAGAGATCCCACATCGGTTGGAGTGGGGAACGAAACATTCTTTATAATGGTGTGGAAACCTCTCCTTAGTAGACGCGTTTTTAAAACCTTGGGGGGAAAGCCCAAAGAGGATAGTATCTGCTAGCGGTGAGCTTGGACTGTTACAAATGGTATAAGAGCCAGACACCAGACGGTGTGCCAACAAGGATGCTAGGCCCCAAAGGGAGTGGATTATGAAATGCCACATCGATTGGAGAGGGGAACGAATGTCAGCGAGGACGTTGGGCCCGGAATGGGGGGTGGATTGTGAGATCCCACATCGGTTGGAGAGGCAACGAAGCATTCTTTATAAGGGTGTGGAGACCTCTCCTTAGCATATGCGTTTTAAAAACCTTGAGGGGAAGCTCGAAAGGGAAAAGCCCAAAGAGGACAATATATGTTAACGGTAGGCTTGGGCCGTTACAGGATTTCTTTGATATGATGAATGTACTCAAAGATAAACTCCGTTAACGTCTTTCAGATGAATATCTTCATTTAATTTACTTTTAATGTACTTCCTTTTGTAAGTTTGGGTGAACTTGATCATTTAATTTGCTCTAACGAAATTATTCGATCATTCATGTTAAGTACGATATACTATTTAGCAAAAAGGAATGTCAACAAACTTCGCTAAGGAGTTCGAAAGCTTTTAATTCTATTTCTCTGTCATGCAGATAAATTTTGTTACAATTGCATTGTGCAATGGACTAAAGTGGTTTCTGGAAAGCACTCTTGCACACTTTCATCCATTAAGTGCCCTTTATGCAAGGTACTATTTTCTTCCCCTGTTAATCTTGTCTTAGTTTAGCATTCCATACTCTGTATAGCATTTCTTATTTTTTACATTTAATCAACAGACAGAAAGTCCTTCTATAATACATGGATTAGATGGACATTGTTTCCAAAGACATTATGTTAATCAGGATTTTCAGGATAGGTATCTTCCTGTTGATACTTCCCCTAGGTTTTCGTGTTATATTCTTATTTTCTGTGTTTTAATTGACTATGGATTATAATTGATGTTATTTGCAGCTTTATCTTATCAAAAGCTCAAAAGTATAGATTACAGTGCTATTATACTGAACCAGGTTCGTTTCGGTGTTGATGCTCCAACATTTACATCATGATTACTTGGATTAATGAATTTCGCTGTACGTGTAGGTTTCTTGGATGACATATTCAGTGTAAAGAAGTATTGGAAGTTACGGAAGTATCTACAGGCAAACCAGTGGCTCGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGTTCCTGACTGTGTTTCTTACATTGCATTTATACTTCTATGGGTGCTGCTTCCTTTGCCCCCTTCTTTGTCCTGGAGAATGGTTTACACCCAATGTCAAACAAAATTCCCTAGACCAAAGAGGCGGGTGGAAAGGAAGAAAGCTTTCTGTTCCTCATTCCCAGGTTATCCTATGGTCGGATTACCAGTAATTAATGAAATTCTTAGTTCCAAAATGGGACGTGGGCATGTAAAAAGGTAGGAAAGGGATGGGGTTTCTCTCGTTTATGGCACAATAACCCCTAGCAGGTTTCACTCCCTCTGATTGAAGATTTGAGAACTCTGTTTATGAGATCCCACGTCAGGTGGGGAGGAGAACGAAGCATTTCTTATAAGAGTGTGAAACCTCTTCGTAGTAGACGCGTTTTAAAATTGTGAGGTTGACTGCGATACAGAACGGGCTAAAGCGGACAATATCTGCTAGCAGTGGGCTTGGGCTGTTACAAATGGTATCAGAGCCAGACACTGGGCAGTGTGCCATCGAGGACGCTGGACCCCAAGGAGGGTGGATTGTGAGATCCCACGTCAGTTGGAGAGAGGAACGAAGCATTCCTTATAAGAGTGTGGAAACCTCTCCCTAGTAGACATGCTTTAAAATCGTGAGGCTGACGGTGATACGTAACGGGCTAAAGCAGGCAATATTTGCTAGTGGTGGCTTGGGCTGTTACATAGTTTTTTATTTCAATGGTTGAGAAAAACTGTGTATTGTGGATGTCGGTGTTGGTGTTGTGGCTGTCGAATGTAGGCAAGATGAGGTAAAGATATGTCTGTAGACTGTGGGGATGGATTACTGTAGACTAAACAGGATAGCAGTAGCAGGTGTATGATACCGTTTCTATGGCACAGTTTCTTGATTGATCCATTCTGTTCTTATGTATTACAGTTCCTTATGGATGATGACTGATAGTCTCCTTCCCTTTTTACAGGAAGAAGATGTTGACATAATTATGCACCACCTGCTTGGTTCAATTCATTCATTTTTTAGTAGGTAATAACCATCCACAATACCCTGCTCCCATATACCTATCATTAAACGTCATTTTTATGCTTTTCGTTCGGGTTTGGCTGGTAGAATACCCCTAGTCACTATGACTGTAACAGCCCAAGGCTACCGCTAGCAGATATTGTCCCCTTTGGTCTGTTACATATCGCCATCAACACGGTTTTAAAATGCGTTTTTAAAAAGATGTGAAGCTGATGACGATACGTAACGGGCCAAAGCAGACAATATCTGCTAACGGTGAGTTTGAGCTGTTACAAATGGTATCAGAACTAAACACTGGGCGTTGTGCCAGCGAGGACGTTGGGCCCTGAAGGGGGTGGATTGTGAGATCTCACTTCGGTTGGAGAGGGGAACGAAACATTTCTTATAAGAGTGTAGAAACCTCTTCCTAGTAGATGCGTTTTAAAACTATGGAATTAAGTTGTTACAATCATCTATCCACATGAATGTAAATATGCATGGTACCTGATTACACTCTGAAACCTGCTTCTTGTTCTTTGTTTTTCCTCAAAGAAATGAACCTAGGTATCAAACAGAAACTCCTCAGCTGAAGAGGGAAAGGTTTAACAGCATGATCCTTGATGCAGCGAAGCCATTCCTGTCAGAAAGAGCGGACCGGTTCGTGCTCGAGTTGGAGCTGTTTCTTGCTTCAGGTTTAAACATCGAAGCCTATGATTCGGTTTACTTGCAACGGCTGGGTTGGAACAAGCCTGTCGGACCCAGCATGGCGGTAGAAAATCTTGGACACGAACCTGTAACTCCATACTTGTTTATCTTTGACTATGACCCTGATGATGGTGATTAA

mRNA sequence

CGTTCTCATTGTAAATCCTTGTCGGGAAGGGGCATGGAATTGCAGGGCACTGCGCCATTGGAGATGGAGACAAGCAGTTCCTCTTCCGACGATACGAACCCTTGCCCGATCTGCCTCGGACCCATAATTCAACCTTCCTATCTCGACAAATGCTTCCATAAATTTTGTTACAATTGCATTGTGCAATGGACTAAAGTGGTTTCTGGAAAGCACTCTTGCACACTTTCATCCATTAAGTGCCCTTTATGCAAGACAGAAAGTCCTTCTATAATACATGGATTAGATGGACATTGTTTCCAAAGACATTATGTTAATCAGGATTTTCAGGATAGCTTTATCTTATCAAAAGCTCAAAAGTATAGATTACAGTGCTATTATACTGAACCAGGTTTCTTGGATGACATATTCAGTGTAAAGAAGTATTGGAAGTTACGGAAGTATCTACAGGCAAACCAGTGGCTCGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGAAGAAGATGTTGACATAATTATGCACCACCTGCTTGGTTCAATTCATTCATTTTTTAGTAGAAATGAACCTAGGTATCAAACAGAAACTCCTCAGCTGAAGAGGGAAAGGTTTAACAGCATGATCCTTGATGCAGCGAAGCCATTCCTGTCAGAAAGAGCGGACCGGTTCGTGCTCGAGTTGGAGCTGTTTCTTGCTTCAGGTTTAAACATCGAAGCCTATGATTCGGTTTACTTGCAACGGCTGGGTTGGAACAAGCCTGTCGGACCCAGCATGGCGGTAGAAAATCTTGGACACGAACCTGTAACTCCATACTTGTTTATCTTTGACTATGACCCTGATGATGGTGATTAA

Coding sequence (CDS)

ATGGAATTGCAGGGCACTGCGCCATTGGAGATGGAGACAAGCAGTTCCTCTTCCGACGATACGAACCCTTGCCCGATCTGCCTCGGACCCATAATTCAACCTTCCTATCTCGACAAATGCTTCCATAAATTTTGTTACAATTGCATTGTGCAATGGACTAAAGTGGTTTCTGGAAAGCACTCTTGCACACTTTCATCCATTAAGTGCCCTTTATGCAAGACAGAAAGTCCTTCTATAATACATGGATTAGATGGACATTGTTTCCAAAGACATTATGTTAATCAGGATTTTCAGGATAGCTTTATCTTATCAAAAGCTCAAAAGTATAGATTACAGTGCTATTATACTGAACCAGGTTTCTTGGATGACATATTCAGTGTAAAGAAGTATTGGAAGTTACGGAAGTATCTACAGGCAAACCAGTGGCTCGAAGTTTGGTTGAAAAGGGAACTTCAAGCTTTGATTCAGGAAGAAGATGTTGACATAATTATGCACCACCTGCTTGGTTCAATTCATTCATTTTTTAGTAGAAATGAACCTAGGTATCAAACAGAAACTCCTCAGCTGAAGAGGGAAAGGTTTAACAGCATGATCCTTGATGCAGCGAAGCCATTCCTGTCAGAAAGAGCGGACCGGTTCGTGCTCGAGTTGGAGCTGTTTCTTGCTTCAGGTTTAAACATCGAAGCCTATGATTCGGTTTACTTGCAACGGCTGGGTTGGAACAAGCCTGTCGGACCCAGCATGGCGGTAGAAAATCTTGGACACGAACCTGTAACTCCATACTTGTTTATCTTTGACTATGACCCTGATGATGGTGATTAA

Protein sequence

MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGFLDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEPRYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGWNKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD

Homology

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BLAST of Carg12894 vs. NCBI nr
Match: XP_022946760.1 (uncharacterized protein LOC111450733 [Cucurbita moschata])

HSP 1 Score: 572.8 bits (1475), Expect = 6.3e-160
Identity = 271/273 (99.27%), Postives = 273/273 (100.00%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           LDDIFSV+KYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP
Sbjct: 121 LDDIFSVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240

Query: 241 NKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD 274
           NKPVGPSMAVE+LGHEPVTPYLFIFDYDPDDGD
Sbjct: 241 NKPVGPSMAVEDLGHEPVTPYLFIFDYDPDDGD 273

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BLAST of Carg12894 vs. NCBI nr
Match: XP_023545827.1 (uncharacterized protein LOC111805146 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 571.6 bits (1472), Expect = 1.4e-159
Identity = 270/273 (98.90%), Postives = 273/273 (100.00%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           LDDIFSV+KYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP
Sbjct: 121 LDDIFSVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           RYQTETPQLKR+RFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 181 RYQTETPQLKRDRFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240

Query: 241 NKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD 274
           NKPVGPSMAVE+LGHEPVTPYLFIFDYDPDDGD
Sbjct: 241 NKPVGPSMAVEDLGHEPVTPYLFIFDYDPDDGD 273

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BLAST of Carg12894 vs. NCBI nr
Match: XP_022999126.1 (uncharacterized protein LOC111493604 [Cucurbita maxima])

HSP 1 Score: 560.8 bits (1444), Expect = 2.5e-156
Identity = 266/273 (97.44%), Postives = 270/273 (98.90%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH
Sbjct: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF
Sbjct: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           LDDIF+V+KYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNE 
Sbjct: 121 LDDIFNVQKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEH 180

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           RYQTETPQLKR+RFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 181 RYQTETPQLKRDRFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240

Query: 241 NKPVGPSMAVENLGHEPVTPYLFIFDYDPDDGD 274
           NKP GPSMAVE+LG EPVTPYLFIFDYDPDDGD
Sbjct: 241 NKPFGPSMAVEDLGLEPVTPYLFIFDYDPDDGD 273

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BLAST of Carg12894 vs. NCBI nr
Match: XP_022150768.1 (uncharacterized protein LOC111018833 [Momordica charantia])

HSP 1 Score: 489.6 bits (1259), Expect = 7.0e-135
Identity = 231/274 (84.31%), Postives = 255/274 (93.07%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQ TA  EMET+SSS DDTNPCPICLG II+PSYLDKCFHKFCYNCIVQWTKVVSGK 
Sbjct: 6   MELQSTAQKEMETASSSYDDTNPCPICLGSIIRPSYLDKCFHKFCYNCIVQWTKVVSGKR 65

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SC LS IKCPLCKTES SIIHGLDGHCFQRHYVNQDFQDSFILSKA KYRLQCYYTEPGF
Sbjct: 66  SCILSPIKCPLCKTESSSIIHGLDGHCFQRHYVNQDFQDSFILSKAHKYRLQCYYTEPGF 125

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           L+DIF+V++YWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLG I+ FFSRNE 
Sbjct: 126 LEDIFNVQRYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGLINPFFSRNEQ 185

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           +YQTE+P++K+E+F+S++ DAAKPFLS RADRFV ELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 186 KYQTESPEVKQEKFSSIVHDAAKPFLSARADRFVHELELFLASGLNIEAYDSVYLQRLGW 245

Query: 241 NKPVGPSMAV-ENLGHEPVTPYLFIFDYDPDDGD 274
           ++PV PS+A+ E+LG +PVTPYL+IFDYDPDDG+
Sbjct: 246 SEPVVPSVAIKEDLGLKPVTPYLYIFDYDPDDGE 279

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BLAST of Carg12894 vs. NCBI nr
Match: XP_004139186.2 (PREDICTED: uncharacterized protein LOC101211581 isoform X1 [Cucumis sativus] >KGN60891.1 hypothetical protein Csa_2G021620 [Cucumis sativus])

HSP 1 Score: 481.5 bits (1238), Expect = 1.9e-132
Identity = 230/274 (83.94%), Postives = 248/274 (90.51%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQ TA +EMET +S+SD TNPCPICLGPI Q SYLDKCFH FCYNCIVQWTKVVSGK 
Sbjct: 6   MELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKR 65

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTES SIIHGLDGH FQRHYVN DFQDSFILSKA +YRLQCYYTEPGF
Sbjct: 66  SCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGF 125

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           L+DIF V++YWKL+KYLQANQWLEVWLKRELQALIQEEDVDIIMHH LG I+SFF RNEP
Sbjct: 126 LNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFLGLINSFFRRNEP 185

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
            YQTETP+LKR+RF+  ILDAAKPFLS RADRF+LELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 186 EYQTETPELKRKRFSQTILDAAKPFLSARADRFILELELFLASGLNIEAYDSVYLQRLGW 245

Query: 241 NKPVGPSMA-VENLGHEPVTPYLFIFDYDPDDGD 274
           NKP+ PS+A  E+LG + VTPYL+IFD DPDDGD
Sbjct: 246 NKPIVPSVANEEDLGLKSVTPYLYIFDCDPDDGD 279

[Close]

BLAST of Carg12894 vs. TAIR10
Match: AT3G05250.1 (RING/U-box superfamily protein)

HSP 1 Score: 295.4 bits (755), Expect = 3.5e-80
Identity = 144/267 (53.93%), Postives = 189/267 (70.79%), Query Frame = 0


Query: 14  SSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLCK 73
           S     D +PCPICLG  ++ SYLD CFHKFC+NCI QW KVVS K S   SS+ CPLCK
Sbjct: 12  SIDDGSDFDPCPICLGQFLRESYLDTCFHKFCFNCIKQWIKVVSSKASKQRSSVTCPLCK 71

Query: 74  TESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGFLDDIFSVKKYWKL 133
           TE+ SIIH  DG  F+RHY++ +  D F+L+K Q+YRLQCYYTE GFL D+F V ++WKL
Sbjct: 72  TENLSIIHNYDGCSFERHYIDPNIPDGFVLTKEQRYRLQCYYTESGFLADVFDVARFWKL 131

Query: 134 RKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEPRYQTETPQLK--- 193
           +K+LQ N+ LE WL+RELQAL+QEEDVDI++HHL+G + SF  R + R + ET   +   
Sbjct: 132 QKFLQPNRCLEAWLRRELQALMQEEDVDIVLHHLVGVMESFCKRIKQRRKQETRSAETTN 191

Query: 194 RERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGWN--KPVGPSM 253
           +E+F +++ +AA+PF+  R DRFV ELELFLA+GLN+EAYD++Y Q L  N  + +G + 
Sbjct: 192 QEQFKAVVSEAARPFVMARTDRFVDELELFLAAGLNLEAYDAIYKQGLEGNNRREIGAAS 251

Query: 254 -----AVENLGHEPVTPYLFIFDYDPD 271
                  E+     VTPYLFIF+ D D
Sbjct: 252 EEREEVEEHNVRTRVTPYLFIFEEDSD 278

[Close]

BLAST of Carg12894 vs. TAIR10
Match: AT2G39100.1 (RING/U-box superfamily protein)

HSP 1 Score: 48.9 bits (115), Expect = 5.7e-06
Identity = 29/91 (31.87%), Postives = 46/91 (50.55%), Query Frame = 0


Query: 143 LEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEPRYQTETPQLKRERFNSMILDAA 202
           +E W++RELQA++ + D  +I+H           R   R   +T  L  +  +S+     
Sbjct: 204 IEPWIRRELQAVLGDPDPSVIVHFASALFIKRLERENNRQTGQTGMLVEDEVSSL----- 263

Query: 203 KPFLSERADRFVLELELFLASGLNIEAYDSV 234
           + FLS++ D F  EL  F  S L +E YD+V
Sbjct: 264 RKFLSDKVDIFWHELRCFAESILTMETYDAV 289

[Close]

BLAST of Carg12894 vs. TAIR10
Match: AT4G10940.1 (RING/U-box protein)

HSP 1 Score: 43.9 bits (102), Expect = 1.8e-04
Identity = 21/67 (31.34%), Postives = 33/67 (49.25%), Query Frame = 0


Query: 9  LEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIK 68
          +E+E +  +  +   C IC+  II    LD C H FC+ CI  W+ +++           
Sbjct: 16 VEVEHNGMTEIEGERCGICMDIIIDRGVLDCCQHWFCFECIDNWSTIMN----------L 72

Query: 69 CPLCKTE 76
          CPLC+ E
Sbjct: 76 CPLCQRE 72

[Close]

BLAST of Carg12894 vs. TAIR10
Match: AT3G05670.1 (RING/U-box protein)

HSP 1 Score: 41.6 bits (96), Expect = 9.2e-04
Identity = 22/55 (40.00%), Postives = 27/55 (49.09%), Query Frame = 0


Query: 22  NPCPICLGPIIQ---PSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLCK 74
           N C ICL           LD C H FC+ CI++W+KV S          +CPLCK
Sbjct: 411 NVCGICLSEEDMRRLKGTLDCCSHYFCFTCIMEWSKVES----------RCPLCK 455

[Close]

BLAST of Carg12894 vs. Swiss-Prot
Match: sp|Q9NS56|TOPRS_HUMAN (E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 5   GTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTK 55
           GT+ L+    + +S D+  CPICL      SYLD+C HKFC+ C+ +W+K
Sbjct: 85  GTSKLQQTVPADASPDSK-CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK 133

[Close]

BLAST of Carg12894 vs. Swiss-Prot
Match: sp|Q80Z37|TOPRS_MOUSE (E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1)

HSP 1 Score: 55.5 bits (132), Expect = 1.1e-06
Identity = 22/50 (44.00%), Postives = 32/50 (64.00%), Query Frame = 0


Query: 5   GTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTK 55
           GT+ L+    + +S D+  CPICL      SYLD+C HKFC+ C+ +W+K
Sbjct: 86  GTSKLQQTVPADASPDSK-CPICLDRFDNVSYLDRCLHKFCFRCVQEWSK 134

[Close]

BLAST of Carg12894 vs. Swiss-Prot
Match: sp|P29129|ICP0_SUHVF (E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain Indiana-Funkhauser / Becker) OX=31523 GN=EP0 PE=2 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.6e-05
Identity = 24/61 (39.34%), Postives = 30/61 (49.18%), Query Frame = 0


Query: 24 CPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLCKTESPSIIHGL 83
          CPICL      +    C HKFC +CI +W          TL+S  CPLC     SI+H +
Sbjct: 46 CPICLDVAATEAQTLPCMHKFCLDCIQRW----------TLTSTACPLCNARVTSILHHV 96

Query: 84 D 85
          D
Sbjct: 106 D 96

[Close]

BLAST of Carg12894 vs. TrEMBL
Match: tr|A0A0A0LLN5|A0A0A0LLN5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021620 PE=4 SV=1)

HSP 1 Score: 481.5 bits (1238), Expect = 1.3e-132
Identity = 230/274 (83.94%), Postives = 248/274 (90.51%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQ TA +EMET +S+SD TNPCPICLGPI Q SYLDKCFH FCYNCIVQWTKVVSGK 
Sbjct: 6   MELQSTASMEMETRTSTSDYTNPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKR 65

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SCTLSSIKCPLCKTES SIIHGLDGH FQRHYVN DFQDSFILSKA +YRLQCYYTEPGF
Sbjct: 66  SCTLSSIKCPLCKTESSSIIHGLDGHNFQRHYVNPDFQDSFILSKAHRYRLQCYYTEPGF 125

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           L+DIF V++YWKL+KYLQANQWLEVWLKRELQALIQEEDVDIIMHH LG I+SFF RNEP
Sbjct: 126 LNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFLGLINSFFRRNEP 185

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
            YQTETP+LKR+RF+  ILDAAKPFLS RADRF+LELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 186 EYQTETPELKRKRFSQTILDAAKPFLSARADRFILELELFLASGLNIEAYDSVYLQRLGW 245

Query: 241 NKPVGPSMA-VENLGHEPVTPYLFIFDYDPDDGD 274
           NKP+ PS+A  E+LG + VTPYL+IFD DPDDGD
Sbjct: 246 NKPIVPSVANEEDLGLKSVTPYLYIFDCDPDDGD 279

[Close]

BLAST of Carg12894 vs. TrEMBL
Match: tr|A0A1S3BZL4|A0A1S3BZL4_CUCME (uncharacterized protein LOC103495144 OS=Cucumis melo OX=3656 GN=LOC103495144 PE=4 SV=1)

HSP 1 Score: 464.5 bits (1194), Expect = 1.6e-127
Identity = 222/272 (81.62%), Postives = 245/272 (90.07%), Query Frame = 0


Query: 1   MELQGTAPLEMETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKH 60
           MELQ  A +E++TS+S+SD T+PCPICLGPI Q SYLDKCFH FCYNCIVQWTKVVSGK 
Sbjct: 6   MELQSAASMEIKTSTSTSDYTDPCPICLGPINQSSYLDKCFHNFCYNCIVQWTKVVSGKR 65

Query: 61  SCTLSSIKCPLCKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGF 120
           SC LSSIKCPLCKTES SIIHGLDGH FQRHYVN DFQDSFILSKA KYRLQCYYTEPGF
Sbjct: 66  SCRLSSIKCPLCKTESSSIIHGLDGHHFQRHYVNPDFQDSFILSKAHKYRLQCYYTEPGF 125

Query: 121 LDDIFSVKKYWKLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEP 180
           L+DIF V++YWKL+KYLQANQWLEVWLKRELQALIQEEDVDIIMHH +G I+SFF RNEP
Sbjct: 126 LNDIFDVQRYWKLQKYLQANQWLEVWLKRELQALIQEEDVDIIMHHFVGLINSFFRRNEP 185

Query: 181 RYQTETPQLKRERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGW 240
           +YQTETP+LKR+RF+  ILDAAKPFLS RADRF+LELELFLASGLNIEAYDSVYLQRLGW
Sbjct: 186 KYQTETPELKRKRFSQTILDAAKPFLSARADRFMLELELFLASGLNIEAYDSVYLQRLGW 245

Query: 241 NKPVGPSMA-VENLGHEPVTPYLFIFDYDPDD 272
           N+P+  S+A  E+LG + VTPYL+IFD DPDD
Sbjct: 246 NEPIVLSVANEEDLGLKSVTPYLYIFDNDPDD 277

[Close]

BLAST of Carg12894 vs. TrEMBL
Match: tr|A0A2K2AB16|A0A2K2AB16_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G034800v3 PE=4 SV=1)

HSP 1 Score: 367.9 bits (943), Expect = 2.0e-98
Identity = 163/260 (62.69%), Postives = 209/260 (80.38%), Query Frame = 0


Query: 12  ETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPL 71
           E  S SS D+NPCPICL P +Q SYLD CFHKFCY CI+QWTKVVS + S   SS+KCPL
Sbjct: 11  ENQSCSSSDSNPCPICLAPFLQESYLDTCFHKFCYKCILQWTKVVSSQKSRRPSSVKCPL 70

Query: 72  CKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGFLDDIFSVKKYW 131
           CKT++ S+I+G DG  FQRHYVNQ F+DS   SKA KYRLQCYYTEPG L+D  +V ++W
Sbjct: 71  CKTDNFSLIYGYDGSSFQRHYVNQGFEDSSFFSKAHKYRLQCYYTEPGILNDTINVSRFW 130

Query: 132 KLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEPRYQTETPQLKR 191
           KLRKYLQ N+WL+ WL+RE+Q+L+QEED+++I++H+LG+++SFFSRNE   QT+TP++K+
Sbjct: 131 KLRKYLQPNRWLQSWLRREVQSLLQEEDIEVILYHILGTVNSFFSRNEHTRQTKTPEMKQ 190

Query: 192 ERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGWNKPVGPSMAVE 251
           E F +++ +AA+PFL+ + DRFV ELELFLASGLNIEAYD VYLQ++GWN P     A E
Sbjct: 191 EEFKAVVSNAARPFLTAKTDRFVTELELFLASGLNIEAYDEVYLQQMGWNTPKTTEAAGE 250

Query: 252 NLGHEPVTPYLFIFDYDPDD 272
           ++ H PV PYLFIFD D ++
Sbjct: 251 SIEHNPVVPYLFIFDADSEN 270

[Close]

BLAST of Carg12894 vs. TrEMBL
Match: tr|U5GAG3|U5GAG3_POPTR (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G035600v3 PE=4 SV=1)

HSP 1 Score: 367.1 bits (941), Expect = 3.5e-98
Identity = 163/260 (62.69%), Postives = 208/260 (80.00%), Query Frame = 0


Query: 12  ETSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPL 71
           E  S SS D+NPCPICL P +Q SYLD CFHKFCY CI+QWTKVVS K S   SS+KCPL
Sbjct: 11  ENQSCSSSDSNPCPICLAPFLQESYLDTCFHKFCYKCILQWTKVVSRKESRRPSSVKCPL 70

Query: 72  CKTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGFLDDIFSVKKYW 131
           CKT++ S+I+G DG  FQRHYVNQ F+DS   SKA KYRLQCYYTEPG L+D  +V +YW
Sbjct: 71  CKTDNFSLIYGYDGSSFQRHYVNQGFEDSSFFSKAHKYRLQCYYTEPGILNDAINVSRYW 130

Query: 132 KLRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEPRYQTETPQLKR 191
           KLRKYLQ N+WL+ WL+RE+QAL+QEED+++I++H+LG+++SFFSRNE   QT+TP+ K+
Sbjct: 131 KLRKYLQPNRWLQSWLRREVQALLQEEDIEVILYHILGTVNSFFSRNEHMRQTKTPETKQ 190

Query: 192 ERFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGWNKPVGPSMAVE 251
           E F +++ +AA+PFL+ + DRFV+ELELFLASGLNIEAYD VYLQ++GWN P       E
Sbjct: 191 EEFKAVVSNAARPFLTAKTDRFVIELELFLASGLNIEAYDEVYLQQMGWNTPKTTEAGGE 250

Query: 252 NLGHEPVTPYLFIFDYDPDD 272
           ++ H PV PYL+IFD + ++
Sbjct: 251 SIEHNPVVPYLYIFDANSEN 270

[Close]

BLAST of Carg12894 vs. TrEMBL
Match: tr|A0A2H5P9X1|A0A2H5P9X1_CITUN (Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_117040 PE=4 SV=1)

HSP 1 Score: 365.9 bits (938), Expect = 7.7e-98
Identity = 168/263 (63.88%), Postives = 205/263 (77.95%), Query Frame = 0


Query: 13  TSSSSSDDTNPCPICLGPIIQPSYLDKCFHKFCYNCIVQWTKVVSGKHSCTLSSIKCPLC 72
           +SS SS++ NPCPICLGP+++ SYLDKCFHKFCYNCIV WTKVV+ KHS  LSS+KCPLC
Sbjct: 10  SSSCSSENPNPCPICLGPVVEDSYLDKCFHKFCYNCIVHWTKVVASKHSSLLSSVKCPLC 69

Query: 73  KTESPSIIHGLDGHCFQRHYVNQDFQDSFILSKAQKYRLQCYYTEPGFLDDIFSVKKYWK 132
           KTE+ SIIHG DG  FQRHY++Q F DSF  SKA +YRLQ YYTEPG L+D+F+V +YWK
Sbjct: 70  KTENVSIIHGYDGTYFQRHYISQIFGDSFFFSKAHRYRLQSYYTEPGILNDVFNVSRYWK 129

Query: 133 LRKYLQANQWLEVWLKRELQALIQEEDVDIIMHHLLGSIHSFFSRNEPRYQTETPQLKRE 192
            RKYLQ+NQWL+ WL+RE+QA++QEEDV+I++HH+LG + SF  RN  R Q  TP+ K E
Sbjct: 130 SRKYLQSNQWLQSWLRREIQAVMQEEDVEIVVHHILGVVDSFLKRNNQRCQMGTPETKEE 189

Query: 193 RFNSMILDAAKPFLSERADRFVLELELFLASGLNIEAYDSVYLQRLGWNKP--VGPSMAV 252
            F +++ DAA+PFL  R DRF+ E++LFLASGLNIEAYD+VY+QRLGWN P     S   
Sbjct: 190 DFKALVSDAARPFLMTRTDRFLNEMQLFLASGLNIEAYDAVYMQRLGWNTPRVTMESGEG 249

Query: 253 ENLGHEPVTPYLFIFDYDPDDGD 274
           E  G  PV PYL IFD D D  D
Sbjct: 250 ETSGQTPVIPYLHIFDEDSDGTD 272

The following BLAST results are available for this feature:

BLAST of Carg12894 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022946760.1	6.3e-160	99.27	uncharacterized protein LOC111450733 [Cucurbita moschata]	[more]
XP_023545827.1	1.4e-159	98.90	uncharacterized protein LOC111805146 [Cucurbita pepo subsp. pepo]	[more]
XP_022999126.1	2.5e-156	97.44	uncharacterized protein LOC111493604 [Cucurbita maxima]	[more]
XP_022150768.1	7.0e-135	84.31	uncharacterized protein LOC111018833 [Momordica charantia]	[more]
XP_004139186.2	1.9e-132	83.94	PREDICTED: uncharacterized protein LOC101211581 isoform X1 [Cucumis sativus] >KG...	[more]

BLAST of Carg12894 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G05250.1	3.5e-80	53.93	RING/U-box superfamily protein	[more]
AT2G39100.1	5.7e-06	31.87	RING/U-box superfamily protein	[more]
AT4G10940.1	1.8e-04	31.34	RING/U-box protein	[more]
AT3G05670.1	9.2e-04	40.00	RING/U-box protein	[more]

BLAST of Carg12894 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9NS56\|TOPRS_HUMAN	1.1e-06	44.00	E3 ubiquitin-protein ligase Topors OS=Homo sapiens OX=9606 GN=TOPORS PE=1 SV=1	[more]
sp\|Q80Z37\|TOPRS_MOUSE	1.1e-06	44.00	E3 ubiquitin-protein ligase Topors OS=Mus musculus OX=10090 GN=Topors PE=1 SV=1	[more]
sp\|P29129\|ICP0_SUHVF	1.6e-05	39.34	E3 ubiquitin-protein ligase ICP0 OS=Suid herpesvirus 1 (strain Indiana-Funkhause...	[more]

BLAST of Carg12894 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LLN5\|A0A0A0LLN5_CUCSA	1.3e-132	83.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G021620 PE=4 SV=1	[more]
tr\|A0A1S3BZL4\|A0A1S3BZL4_CUCME	1.6e-127	81.62	uncharacterized protein LOC103495144 OS=Cucumis melo OX=3656 GN=LOC103495144 PE=...	[more]
tr\|A0A2K2AB16\|A0A2K2AB16_POPTR	2.0e-98	62.69	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G034800v3 PE=...	[more]
tr\|U5GAG3\|U5GAG3_POPTR	3.5e-98	62.69	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_005G035600v3 PE=...	[more]
tr\|A0A2H5P9X1\|A0A2H5P9X1_CITUN	7.7e-98	63.88	Uncharacterized protein OS=Citrus unshiu OX=55188 GN=CUMW_117040 PE=4 SV=1	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Molecular Function**
Term	Definition
GO:0046872	metal ion binding

Vocabulary: **INTERPRO**
Term	Definition
IPR017907	Znf_RING_CS
IPR013083	Znf_RING/FYVE/PHD
IPR018957	Znf_C3HC4_RING-type
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0046872	metal ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg12894-RA	Carg12894-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 24..72 e-value: 2.2E-4 score: 30.5
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 24..73 score: 11.958
IPR018957	Zinc finger, C3HC4 RING-type	PFAM	PF00097	zf-C3HC4	coord: 24..72 e-value: 9.5E-9 score: 34.9
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 4..140 e-value: 7.9E-11 score: 44.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR22937:SF70	SUBFAMILY NOT NAMED	coord: 11..271
None	No IPR available	PANTHER	PTHR22937	RING FINGER CONTAINING PROTEIN	coord: 11..271
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 21..81
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 40..49

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg12894	Cla019879	Watermelon (97103) v1	carwmB0907
Carg12894	Csa2G021620	Cucumber (Chinese Long) v2	carcuB0917
Carg12894	MELO3C004279	Melon (DHL92) v3.5.1	carmeB0893
Carg12894	ClCG02G015910	Watermelon (Charleston Gray)	carwcgB0883
Carg12894	CSPI02G03810	Wild cucumber (PI 183967)	carcpiB0938
Carg12894	Cucsa.091610	Cucumber (Gy14) v1	carcgyB1020
Carg12894	CmaCh05G011480	Cucurbita maxima (Rimu)	carcmaB1246
Carg12894	CmoCh05G011590	Cucurbita moschata (Rifu)	carcmoB1216
Carg12894	Lsi11G005300	Bottle gourd (USVL1VR-Ls)	carlsiB822
Carg12894	Cp4.1LG11g09450	Cucurbita pepo (Zucchini)	carcpeB1252
Carg12894	CsGy2G003900	Cucumber (Gy14) v2	carcgybB0890
Carg12894	MELO3C004279.2	Melon (DHL92) v3.6.1	carmedB0900
Carg12894	CsaV3_2G005130	Cucumber (Chinese Long) v3	carcucB0940
Carg12894	Cla97C02G041680	Watermelon (97103) v2	carwmbB0946
Carg12894	Bhi05G001654	Wax gourd	carwgoB1046

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg12894	Silver-seed gourd	carcarB587
Carg12894	Cucurbita maxima (Rimu)	carcmaB1241
Carg12894	Cucurbita moschata (Rifu)	carcmoB1212
Carg12894	Cucurbita pepo (Zucchini)	carcpeB1256
Carg12894	Watermelon (97103) v2	carwmbB0949