Cla019648 (gene) Watermelon (97103) v1

Overview
NameCla019648
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 8054332 .. 8054592 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGCCAGCAGGTTTTAGAGAATTTGGATTCTCTCTGGTTCTTCGCCACCGTATTCTCCAACAGAGCGCCGCCATTGCCGTCTCCACCGCCACCGCCCGTCGAAAAACCCACTCAAAACGGCTTCGTTGAGCCTCCTGCAGAAGAAATTGCGACACCCATTACTCAAATTGAGCAAAATGATGTTGGTGATGAGAAGAAGATTGAAAATGGTGGCGGGGTTGGGATAAAAACAGAGGAGAAAGAACAGAGGAAGTAG

mRNA sequence

ATGGAAGGCCAGCAGGTTTTAGAGAATTTGGATTCTCTCTGGTTCTTCGCCACCGTATTCTCCAACAGAGCGCCGCCATTGCCGTCTCCACCGCCACCGCCCGTCGAAAAACCCACTCAAAACGGCTTCGTTGAGCCTCCTGCAGAAGAAATTGCGACACCCATTACTCAAATTGAGCAAAATGATGTTGGTGATGAGAAGAAGATTGAAAATGGTGGCGGGGTTGGGATAAAAACAGAGGAGAAAGAACAGAGGAAGTAG

Coding sequence (CDS)

ATGGAAGGCCAGCAGGTTTTAGAGAATTTGGATTCTCTCTGGTTCTTCGCCACCGTATTCTCCAACAGAGCGCCGCCATTGCCGTCTCCACCGCCACCGCCCGTCGAAAAACCCACTCAAAACGGCTTCGTTGAGCCTCCTGCAGAAGAAATTGCGACACCCATTACTCAAATTGAGCAAAATGATGTTGGTGATGAGAAGAAGATTGAAAATGGTGGCGGGGTTGGGATAAAAACAGAGGAGAAAGAACAGAGGAAGTAG

Protein sequence

MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQNDVGDEKKIENGGGVGIKTEEKEQRK
Homology
[Close]
BLAST of Cla019648 vs. TrEMBL
Match: Q58A15_CUCME (Putative uncharacterized protein 7G02 (Fragment) OS=Cucumis melo GN=7G02 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-18
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 1  MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQ 60
          MEGQQV EN DSLWFF+TVFSNR PP+       VEKP QN FVEP  EEIATPIT+ E+
Sbjct: 5  MEGQQVFENFDSLWFFSTVFSNRTPPV-------VEKPIQNDFVEPLGEEIATPITRNEE 64

Query: 61 NDVGDEKKIENGGGVGIKTEEKEQRK 87
          NDVG+EK++E        TEE E+++
Sbjct: 65 NDVGEEKEME--------TEEMEEKR 75

[Close]
BLAST of Cla019648 vs. TrEMBL
Match: A0A0A0LX63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470250 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 1  MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQ 60
          MEGQQVLEN DSLWFFATVFSNR PP+       V KP QN FV    EEIATPIT+ E+
Sbjct: 1  MEGQQVLENFDSLWFFATVFSNRTPPV-------VGKPIQNDFVGSLGEEIATPITRNEE 60

Query: 61 NDVGDEKKIENGGGVGIKTEEKEQRK 87
          N+V + K++E        TEE+E+++
Sbjct: 61 NNVCEAKEME--------TEEREEKR 71

[Close]
BLAST of Cla019648 vs. NCBI nr
Match: gi|659068240|ref|XP_008443476.1| (PREDICTED: uncharacterized protein LOC103487056 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-18
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 1  MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQ 60
          MEGQQV EN DSLWFF+TVFSNR PP+       VEKP QN FVEP  EEIATPIT+ E+
Sbjct: 1  MEGQQVFENFDSLWFFSTVFSNRTPPV-------VEKPIQNDFVEPLGEEIATPITRNEE 60

Query: 61 NDVGDEKKIENGGGVGIKTEEKEQRK 87
          NDVG+EK++E        TEE E+++
Sbjct: 61 NDVGEEKEME--------TEEMEEKR 71

[Close]
BLAST of Cla019648 vs. NCBI nr
Match: gi|62149097|dbj|BAD93608.1| (hypothetical protein [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-18
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 1  MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQ 60
          MEGQQV EN DSLWFF+TVFSNR PP+       VEKP QN FVEP  EEIATPIT+ E+
Sbjct: 5  MEGQQVFENFDSLWFFSTVFSNRTPPV-------VEKPIQNDFVEPLGEEIATPITRNEE 64

Query: 61 NDVGDEKKIENGGGVGIKTEEKEQRK 87
          NDVG+EK++E        TEE E+++
Sbjct: 65 NDVGEEKEME--------TEEMEEKR 75

[Close]
BLAST of Cla019648 vs. NCBI nr
Match: gi|778661150|ref|XP_011657601.1| (PREDICTED: uncharacterized protein LOC101209234 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 1  MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQ 60
          MEGQQVLEN DSLWFFATVFSNR PP+       V KP QN FV    EEIATPIT+ E+
Sbjct: 1  MEGQQVLENFDSLWFFATVFSNRTPPV-------VGKPIQNDFVGSLGEEIATPITRNEE 60

Query: 61 NDVGDEKKIENGGGVGIKTEEKEQRK 87
          N+V + K++E        TEE+E+++
Sbjct: 61 NNVCEAKEME--------TEEREEKR 71

The following BLAST results are available for this feature:
BLAST of Cla019648 vs. TrEMBL
Match NameE-valueIdentityDescription
Q58A15_CUCME2.3e-1860.47Putative uncharacterized protein 7G02 (Fragment) OS=Cucumis melo GN=7G02 PE=2 SV... [more]
A0A0A0LX63_CUCSA1.2e-1455.81Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470250 PE=4 SV=1[more]
BLAST of Cla019648 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068240|ref|XP_008443476.1|3.3e-1860.47PREDICTED: uncharacterized protein LOC103487056 [Cucumis melo][more]
gi|62149097|dbj|BAD93608.1|3.3e-1860.47hypothetical protein [Cucumis melo][more]
gi|778661150|ref|XP_011657601.1|1.7e-1455.81PREDICTED: uncharacterized protein LOC101209234 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0009834 plant-type secondary cell wall biogenesis
biological_process GO:0006011 UDP-glucose metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005982 starch metabolic process
biological_process GO:0006970 response to osmotic stress
biological_process GO:0009414 response to water deprivation
biological_process GO:0050832 defense response to fungus
biological_process GO:0042742 defense response to bacterium
biological_process GO:0071555 cell wall organization
biological_process GO:0030244 cellulose biosynthetic process
cellular_component GO:0005575 cellular_component
cellular_component GO:0005618 cell wall
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005886 plasma membrane
molecular_function GO:0003674 molecular_function
molecular_function GO:0016760 cellulose synthase (UDP-forming) activity
molecular_function GO:0046872 metal ion binding
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla019648Cla019648.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla019648Cla97C03G058760Watermelon (97103) v2wmwmbB124
Cla019648Csa1G470250Cucumber (Chinese Long) v2cuwmB009
Cla019648MELO3C002673Melon (DHL92) v3.5.1mewmB147
Cla019648ClCG03G007490Watermelon (Charleston Gray)wcgwmB223
Cla019648CSPI01G21910Wild cucumber (PI 183967)cpiwmB011
Cla019648CmaCh13G005870Cucurbita maxima (Rimu)cmawmB186
Cla019648CmoCh13G006160Cucurbita moschata (Rifu)cmowmB174
Cla019648Lsi02G008270Bottle gourd (USVL1VR-Ls)lsiwmB188
Cla019648Cp4.1LG20g04770Cucurbita pepo (Zucchini)cpewmB508
Cla019648MELO3C002673.2Melon (DHL92) v3.6.1medwmB144
Cla019648Carg19893Silver-seed gourdcarwmB0797
Cla019648CsaV3_1G033130Cucumber (Chinese Long) v3cucwmB014
Cla019648Bhi08G001774Wax gourdwgowmB472
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla019648Watermelon (97103) v2wmwmbB113
Cla019648Watermelon (97103) v2wmwmbB121
Cla019648Watermelon (97103) v2wmwmbB138
Cla019648Wax gourdwgowmB367
Cla019648Watermelon (97103) v1wmwmB079
Cla019648Watermelon (97103) v1wmwmB084
Cla019648Watermelon (97103) v1wmwmB093
Cla019648Cucumber (Gy14) v1cgywmB022
Cla019648Cucumber (Gy14) v1cgywmB377
Cla019648Cucumber (Gy14) v1cgywmB408
Cla019648Cucurbita maxima (Rimu)cmawmB370
Cla019648Cucurbita maxima (Rimu)cmawmB485
Cla019648Cucurbita maxima (Rimu)cmawmB622
Cla019648Cucurbita maxima (Rimu)cmawmB819
Cla019648Cucurbita moschata (Rifu)cmowmB362
Cla019648Cucurbita moschata (Rifu)cmowmB480
Cla019648Cucurbita moschata (Rifu)cmowmB613
Cla019648Cucurbita moschata (Rifu)cmowmB809
Cla019648Melon (DHL92) v3.5.1mewmB223
Cla019648Melon (DHL92) v3.5.1mewmB562
Cla019648Watermelon (Charleston Gray)wcgwmB125
Cla019648Watermelon (Charleston Gray)wcgwmB186
Cla019648Watermelon (Charleston Gray)wcgwmB361
Cla019648Cucumber (Chinese Long) v2cuwmB480
Cla019648Cucumber (Chinese Long) v2cuwmB582
Cla019648Cucurbita pepo (Zucchini)cpewmB024
Cla019648Cucurbita pepo (Zucchini)cpewmB069
Cla019648Cucurbita pepo (Zucchini)cpewmB251
Cla019648Cucurbita pepo (Zucchini)cpewmB279
Cla019648Cucurbita pepo (Zucchini)cpewmB478
Cla019648Bottle gourd (USVL1VR-Ls)lsiwmB053
Cla019648Bottle gourd (USVL1VR-Ls)lsiwmB136
Cla019648Cucumber (Gy14) v2cgybwmB011
Cla019648Cucumber (Gy14) v2cgybwmB451
Cla019648Cucumber (Gy14) v2cgybwmB544
Cla019648Melon (DHL92) v3.6.1medwmB219
Cla019648Melon (DHL92) v3.6.1medwmB549
Cla019648Silver-seed gourdcarwmB0141
Cla019648Silver-seed gourdcarwmB0544
Cla019648Silver-seed gourdcarwmB0956
Cla019648Cucumber (Chinese Long) v3cucwmB506
Cla019648Cucumber (Chinese Long) v3cucwmB611