Cla019648.1 (mRNA) Watermelon (97103) v1

Overview
NameCla019648
TypemRNA
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr3 : 8054332 .. 8054592 (+)
Sequence length261
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAAGGCCAGCAGGTTTTAGAGAATTTGGATTCTCTCTGGTTCTTCGCCACCGTATTCTCCAACAGAGCGCCGCCATTGCCGTCTCCACCGCCACCGCCCGTCGAAAAACCCACTCAAAACGGCTTCGTTGAGCCTCCTGCAGAAGAAATTGCGACACCCATTACTCAAATTGAGCAAAATGATGTTGGTGATGAGAAGAAGATTGAAAATGGTGGCGGGGTTGGGATAAAAACAGAGGAGAAAGAACAGAGGAAGTAG

mRNA sequence

ATGGAAGGCCAGCAGGTTTTAGAGAATTTGGATTCTCTCTGGTTCTTCGCCACCGTATTCTCCAACAGAGCGCCGCCATTGCCGTCTCCACCGCCACCGCCCGTCGAAAAACCCACTCAAAACGGCTTCGTTGAGCCTCCTGCAGAAGAAATTGCGACACCCATTACTCAAATTGAGCAAAATGATGTTGGTGATGAGAAGAAGATTGAAAATGGTGGCGGGGTTGGGATAAAAACAGAGGAGAAAGAACAGAGGAAGTAG

Coding sequence (CDS)

ATGGAAGGCCAGCAGGTTTTAGAGAATTTGGATTCTCTCTGGTTCTTCGCCACCGTATTCTCCAACAGAGCGCCGCCATTGCCGTCTCCACCGCCACCGCCCGTCGAAAAACCCACTCAAAACGGCTTCGTTGAGCCTCCTGCAGAAGAAATTGCGACACCCATTACTCAAATTGAGCAAAATGATGTTGGTGATGAGAAGAAGATTGAAAATGGTGGCGGGGTTGGGATAAAAACAGAGGAGAAAGAACAGAGGAAGTAG

Protein sequence

MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQNDVGDEKKIENGGGVGIKTEEKEQRK
Homology
[Close]
BLAST of Cla019648 vs. TrEMBL
Match: Q58A15_CUCME (Putative uncharacterized protein 7G02 (Fragment) OS=Cucumis melo GN=7G02 PE=2 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 2.3e-18
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 1  MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQ 60
          MEGQQV EN DSLWFF+TVFSNR PP+       VEKP QN FVEP  EEIATPIT+ E+
Sbjct: 5  MEGQQVFENFDSLWFFSTVFSNRTPPV-------VEKPIQNDFVEPLGEEIATPITRNEE 64

Query: 61 NDVGDEKKIENGGGVGIKTEEKEQRK 87
          NDVG+EK++E        TEE E+++
Sbjct: 65 NDVGEEKEME--------TEEMEEKR 75

[Close]
BLAST of Cla019648 vs. TrEMBL
Match: A0A0A0LX63_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470250 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.2e-14
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 1  MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQ 60
          MEGQQVLEN DSLWFFATVFSNR PP+       V KP QN FV    EEIATPIT+ E+
Sbjct: 1  MEGQQVLENFDSLWFFATVFSNRTPPV-------VGKPIQNDFVGSLGEEIATPITRNEE 60

Query: 61 NDVGDEKKIENGGGVGIKTEEKEQRK 87
          N+V + K++E        TEE+E+++
Sbjct: 61 NNVCEAKEME--------TEEREEKR 71

[Close]
BLAST of Cla019648 vs. NCBI nr
Match: gi|659068240|ref|XP_008443476.1| (PREDICTED: uncharacterized protein LOC103487056 [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-18
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 1  MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQ 60
          MEGQQV EN DSLWFF+TVFSNR PP+       VEKP QN FVEP  EEIATPIT+ E+
Sbjct: 1  MEGQQVFENFDSLWFFSTVFSNRTPPV-------VEKPIQNDFVEPLGEEIATPITRNEE 60

Query: 61 NDVGDEKKIENGGGVGIKTEEKEQRK 87
          NDVG+EK++E        TEE E+++
Sbjct: 61 NDVGEEKEME--------TEEMEEKR 71

[Close]
BLAST of Cla019648 vs. NCBI nr
Match: gi|62149097|dbj|BAD93608.1| (hypothetical protein [Cucumis melo])

HSP 1 Score: 99.4 bits (246), Expect = 3.3e-18
Identity = 52/86 (60.47%), Postives = 62/86 (72.09%), Query Frame = 1 

Query: 1  MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQ 60
          MEGQQV EN DSLWFF+TVFSNR PP+       VEKP QN FVEP  EEIATPIT+ E+
Sbjct: 5  MEGQQVFENFDSLWFFSTVFSNRTPPV-------VEKPIQNDFVEPLGEEIATPITRNEE 64

Query: 61 NDVGDEKKIENGGGVGIKTEEKEQRK 87
          NDVG+EK++E        TEE E+++
Sbjct: 65 NDVGEEKEME--------TEEMEEKR 75

[Close]
BLAST of Cla019648 vs. NCBI nr
Match: gi|778661150|ref|XP_011657601.1| (PREDICTED: uncharacterized protein LOC101209234 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 1 

Query: 1  MEGQQVLENLDSLWFFATVFSNRAPPLPSPPPPPVEKPTQNGFVEPPAEEIATPITQIEQ 60
          MEGQQVLEN DSLWFFATVFSNR PP+       V KP QN FV    EEIATPIT+ E+
Sbjct: 1  MEGQQVLENFDSLWFFATVFSNRTPPV-------VGKPIQNDFVGSLGEEIATPITRNEE 60

Query: 61 NDVGDEKKIENGGGVGIKTEEKEQRK 87
          N+V + K++E        TEE+E+++
Sbjct: 61 NNVCEAKEME--------TEEREEKR 71

The following BLAST results are available for this feature:
BLAST of Cla019648 vs. TrEMBL
Match NameE-valueIdentityDescription
Q58A15_CUCME2.3e-1860.47Putative uncharacterized protein 7G02 (Fragment) OS=Cucumis melo GN=7G02 PE=2 SV... [more]
A0A0A0LX63_CUCSA1.2e-1455.81Uncharacterized protein OS=Cucumis sativus GN=Csa_1G470250 PE=4 SV=1[more]
BLAST of Cla019648 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659068240|ref|XP_008443476.1|3.3e-1860.47PREDICTED: uncharacterized protein LOC103487056 [Cucumis melo][more]
gi|62149097|dbj|BAD93608.1|3.3e-1860.47hypothetical protein [Cucumis melo][more]
gi|778661150|ref|XP_011657601.1|1.7e-1455.81PREDICTED: uncharacterized protein LOC101209234 [Cucumis sativus][more]
GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla019648Cla019648gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla019648Cla019648.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla019648.1.cds1Cla019648.1.cds1CDS