Cla015423 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla015423
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr9 : 1685975 .. 1686560 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTGGCTAGTGCTGACCTCGCTCTCCACGGCCAATTCCACCTCTTTTCAAGAATGCTACGCCACCTGCTTCATCATATGCGCCCTCACGCCCGGCGTCGCCTTCTCCGACTGCCCGTTGAGATGCCTGCAAGCTTGCATCGTCCCGTCTTTTCCTATCGACAACGCCGGCGACGTCCATCGACAGCAACAAAATCAATTCTTCTGCAAGCTCGGCTGCGCGGCTTCCTCATGTACTAAGTTTAGCACAAGCCAAAACCCAGGTTCCAAATCTACACTCCTTTTTTAGTTATATTTTAGTAATTTCATAAACACTAACTAATTACTTATAAAGATTGTAAACTTTTTTCATATGCCATCAATTCTTGTTAAGTTGAAGAGGATTATGTTAAAAATACTTGGTTAGTAATTGATGAACATTTTTTTTTAAAAAAAAATTATTTATTTATGAAAATGTACATTGCTTGGTTCACATGTGAAGATTTTCTTTGTTTTTGTTTTTTGTTTTTTTGTTTGTTGATGCAGCTGAAAAAAAAGTGGGGAGATGTGTGGATTCTTGCTCTCAAACATGTTCCATGGATTGA

mRNA sequence

ATGGCTTGGCTAGTGCTGACCTCGCTCTCCACGGCCAATTCCACCTCTTTTCAAGAATGCTACGCCACCTGCTTCATCATATGCGCCCTCACGCCCGGCGTCGCCTTCTCCGACTGCCCGTTGAGATGCCTGCAAGCTTGCATCGTCCCGTCTTTTCCTATCGACAACGCCGGCGACGTCCATCGACAGCAACAAAATCAATTCTTCTGCAAGCTCGGCTGCGCGGCTTCCTCATGTACTAAGTTTAGCACAAGCCAAAACCCAGCTGAAAAAAAAGTGGGGAGATGTGTGGATTCTTGCTCTCAAACATGTTCCATGGATTGA

Coding sequence (CDS)

ATGGCTTGGCTAGTGCTGACCTCGCTCTCCACGGCCAATTCCACCTCTTTTCAAGAATGCTACGCCACCTGCTTCATCATATGCGCCCTCACGCCCGGCGTCGCCTTCTCCGACTGCCCGTTGAGATGCCTGCAAGCTTGCATCGTCCCGTCTTTTCCTATCGACAACGCCGGCGACGTCCATCGACAGCAACAAAATCAATTCTTCTGCAAGCTCGGCTGCGCGGCTTCCTCATGTACTAAGTTTAGCACAAGCCAAAACCCAGCTGAAAAAAAAGTGGGGAGATGTGTGGATTCTTGCTCTCAAACATGTTCCATGGATTGA

Protein sequence

MAWLVLTSLSTANSTSFQECYATCFIICALTPGVAFSDCPLRCLQACIVPSFPIDNAGDVHRQQQNQFFCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCSMD

Homology

[Close]

BLAST of Cla015423 vs. Swiss-Prot
Match: THNL2_ARATH (Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 3.4e-12
Identity = 36/102 (35.29%), Postives = 53/102 (51.96%), Query Frame = 1


Query: 6   LTSLSTANSTSFQECYATCFIIC-ALTPGVAFSDCPLRCLQACIV-PSFPIDNAGDVHRQ 65
           L + + A    F+ECY  C + C A +    +  CP  C + C+  PS P  ++ ++   
Sbjct: 14  LLAQTAAQKIPFKECYPACLVECKAGSKFPKYLKCPFTCTKECLQQPSPPSVSSNNI--- 73

Query: 66  QQNQFFCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCS 106
            ++ +FCKLGCA   C   S+ QNP  ++V  CVDSCS  C+
Sbjct: 74  DESDYFCKLGCATYHCVSLSSIQNPNVERVSACVDSCSNKCT 112

[Close]

BLAST of Cla015423 vs. TrEMBL
Match: A0A0A0K781_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 1.7e-50
Identity = 96/108 (88.89%), Postives = 102/108 (94.44%), Query Frame = 1


Query: 1   MAWLVLTSLSTANSTSFQECYATCFIICALTPGVAFSDCPLRCLQACIVPSFPIDNAGDV 60
           MAWL+LTSLSTANSTSFQECYATCF+ICA+TPGVAFSDCPLRCLQACIVPSFPID+A  V
Sbjct: 12  MAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDDADVV 71

Query: 61  HR-QQQNQFFCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCSMD 108
           HR QQQN FFCKLGCAASSCTKFST QNP E+KVGRCVDSCSQTCSM+
Sbjct: 72  HRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

[Close]

BLAST of Cla015423 vs. TrEMBL
Match: A0A061GH02_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_027831 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 7.3e-22
Identity = 51/105 (48.57%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 1   MAWLVLTSLSTANSTSFQECYATCFIICALTPGVAFSDCPLRCLQACIVPSFPIDNAGDV 60
           M +LVL  L   ++ SFQ CY  CFI C +TP      C ++CL+ CI+PSF   +  D 
Sbjct: 11  MVYLVLGLLVGQSTASFQTCYMGCFIWCVITPNNTVFSCSVKCLKDCIIPSFSFPSGKDT 70

Query: 61  HRQQQNQFFCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCS 106
                 Q+FCKLGCA S CT  S+ +NP E+KVG CVDSCS+TC+
Sbjct: 71  ------QYFCKLGCATSLCTDLSSKENPGEEKVGSCVDSCSETCA 109

[Close]

BLAST of Cla015423 vs. TrEMBL
Match: A0A061GI20_THECC (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative OS=Theobroma cacao GN=TCM_028643 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 4.7e-21
Identity = 49/105 (46.67%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 1   MAWLVLTSLSTANSTSFQECYATCFIICALTPGVAFSDCPLRCLQACIVPSFPIDNAGDV 60
           M  LVL  L   ++ SFQ+CYA CF++C   P      C ++CL  CI+PS  +++  D 
Sbjct: 50  MVCLVLGLLVGQSTASFQKCYAGCFLLCVFIPPNPVFSCAIKCLNECIIPSSTLESGKDT 109

Query: 61  HRQQQNQFFCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCS 106
                 Q+FCKLGCA S CT  S+ +NP E+KVG CVDSCS+TC+
Sbjct: 110 ------QYFCKLGCATSLCTDLSSKENPGEQKVGSCVDSCSETCA 148

[Close]

BLAST of Cla015423 vs. TrEMBL
Match: M5XJ03_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026656mg PE=4 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.2e-19
Identity = 50/108 (46.30%), Postives = 68/108 (62.96%), Query Frame = 1


Query: 1   MAWLVLTSLSTANST-SFQECYATCFIICALTPGVAFSDCPLRCLQACIVPSFPIDNAGD 60
           +A+LVL  +    ST SF+ CY +CFI+C + P      C L CL+ CI+P+ P+   G 
Sbjct: 11  VAYLVLGMMLVGQSTASFESCYGSCFILCVIIPNNTVGSCTLECLKDCIIPNPPL---GQ 70

Query: 61  VHRQQQNQF-FCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCSM 107
            + Q  NQ+ FCKLGCA++ C+ FST QNP  +KV  CVDSCS  C +
Sbjct: 71  SNIQNHNQYDFCKLGCASTLCSNFSTKQNPEVEKVSGCVDSCSGRCKI 115

[Close]

BLAST of Cla015423 vs. TrEMBL
Match: A0A059AI82_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1)

HSP 1 Score: 103.2 bits (256), Expect = 2.0e-19
Identity = 48/105 (45.71%), Postives = 64/105 (60.95%), Query Frame = 1


Query: 1   MAWLVLTSLSTANSTSFQECYATCFIICALTPGVAFSDCPLRCLQACIVPSFPIDNAGDV 60
           M  LVL      +  +FQ+CY  CFI+CA+TPG     C + CL+ CI+P  P D+    
Sbjct: 9   MVCLVLGLFLGQSGANFQDCYPACFILCAITPGRTLFSCSVECLKDCIIP--PSDSLS-- 68

Query: 61  HRQQQNQFFCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCS 106
              +   +FCKLGCA+S CT  ST  NP EK+V  CV+SCS+TC+
Sbjct: 69  --LRDTMYFCKLGCASSLCTNLSTKDNPREKRVAGCVNSCSKTCT 107

[Close]

BLAST of Cla015423 vs. NCBI nr
Match: gi|778729254|ref|XP_011659556.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 206.5 bits (524), Expect = 2.4e-50
Identity = 96/108 (88.89%), Postives = 102/108 (94.44%), Query Frame = 1


Query: 1   MAWLVLTSLSTANSTSFQECYATCFIICALTPGVAFSDCPLRCLQACIVPSFPIDNAGDV 60
           MAWL+LTSLSTANSTSFQECYATCF+ICA+TPGVAFSDCPLRCLQACIVPSFPID+A  V
Sbjct: 12  MAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDDADVV 71

Query: 61  HR-QQQNQFFCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCSMD 108
           HR QQQN FFCKLGCAASSCTKFST QNP E+KVGRCVDSCSQTCSM+
Sbjct: 72  HRQQQQNHFFCKLGCAASSCTKFSTKQNPGERKVGRCVDSCSQTCSMN 119

[Close]

BLAST of Cla015423 vs. NCBI nr
Match: gi|659122243|ref|XP_008461039.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 203.0 bits (515), Expect = 2.6e-49
Identity = 95/108 (87.96%), Postives = 100/108 (92.59%), Query Frame = 1


Query: 1   MAWLVLTSLSTANSTSFQECYATCFIICALTPGVAFSDCPLRCLQACIVPSFPIDNAGDV 60
           MAWL+LTSLSTANSTSFQECYATCF+ICA+TPGVAFSDCPLRCLQACIVPSFPID+   V
Sbjct: 12  MAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQACIVPSFPIDDDDVV 71

Query: 61  HRQ-QQNQFFCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCSMD 108
           HRQ QQN FFCKLGCAASSCTKFST QNP E+KV RCVDSCSQTCSMD
Sbjct: 72  HRQKQQNHFFCKLGCAASSCTKFSTKQNPGERKVERCVDSCSQTCSMD 119

[Close]

BLAST of Cla015423 vs. NCBI nr
Match: gi|694353623|ref|XP_009358204.1| (PREDICTED: thionin-like protein 2 [Pyrus x bretschneideri])

HSP 1 Score: 111.7 bits (278), Expect = 8.0e-22
Identity = 54/109 (49.54%), Postives = 78/109 (71.56%), Query Frame = 1


Query: 1   MAWLVLTSLSTA--NSTSFQECYATCFIICALTPGVAFSDCPLRCLQACIVPS-FPIDNA 60
           +A+LVL  L  A  +S SF+ CY +CFI+C +TP  + S C  +CL+ CI+PS  P+D++
Sbjct: 11  VAYLVLGMLMLAGQSSASFKSCYESCFILCVITPNHSVSYCSFQCLKDCIIPSRSPLDHS 70

Query: 61  GDVHRQQQNQFFCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCSM 107
            ++H+   N +FCKLGCA+S C+  ST QNP  +KVG CVDSCS+TC++
Sbjct: 71  -NIHKD--NVYFCKLGCASSLCSNLSTKQNPEVEKVGGCVDSCSETCTI 116

[Close]

BLAST of Cla015423 vs. NCBI nr
Match: gi|590617165|ref|XP_007023712.1| (To encode a PR protein, Belongs to the plant thionin family with the following members:, putative [Theobroma cacao])

HSP 1 Score: 111.3 bits (277), Expect = 1.0e-21
Identity = 51/105 (48.57%), Postives = 66/105 (62.86%), Query Frame = 1


Query: 1   MAWLVLTSLSTANSTSFQECYATCFIICALTPGVAFSDCPLRCLQACIVPSFPIDNAGDV 60
           M +LVL  L   ++ SFQ CY  CFI C +TP      C ++CL+ CI+PSF   +  D 
Sbjct: 11  MVYLVLGLLVGQSTASFQTCYMGCFIWCVITPNNTVFSCSVKCLKDCIIPSFSFPSGKDT 70

Query: 61  HRQQQNQFFCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCS 106
                 Q+FCKLGCA S CT  S+ +NP E+KVG CVDSCS+TC+
Sbjct: 71  ------QYFCKLGCATSLCTDLSSKENPGEEKVGSCVDSCSETCA 109

[Close]

BLAST of Cla015423 vs. NCBI nr
Match: gi|657943097|ref|XP_008353739.1| (PREDICTED: thionin-like protein 2 [Malus domestica])

HSP 1 Score: 110.5 bits (275), Expect = 1.8e-21
Identity = 52/108 (48.15%), Postives = 74/108 (68.52%), Query Frame = 1


Query: 1   MAWLVLTSLSTA--NSTSFQECYATCFIICALTPGVAFSDCPLRCLQACIVPSFPIDNAG 60
           +A+LVL  L  A  +S SF+ CY +CFI+C +TP  + S C  +CL+ CI+PS    +  
Sbjct: 11  VAYLVLGMLMLAGQSSASFKSCYESCFILCVITPNHSVSYCSFQCLKDCIIPSRSPFDHS 70

Query: 61  DVHRQQQNQFFCKLGCAASSCTKFSTSQNPAEKKVGRCVDSCSQTCSM 107
           ++H+   N +FCKLGCA+S C+  ST QNP  +KVG CVDSCS+TC++
Sbjct: 71  NIHKD--NVYFCKLGCASSLCSNLSTKQNPEVEKVGGCVDSCSKTCTI 116

The following BLAST results are available for this feature:

BLAST of Cla015423 vs. Swiss-Prot


Match Name	E-value	Identity	Description
THNL2_ARATH	3.4e-12	35.29	Thionin-like protein 2 OS=Arabidopsis thaliana GN=At1g12663 PE=3 SV=1	[more]

BLAST of Cla015423 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K781_CUCSA	1.7e-50	88.89	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1	[more]
A0A061GH02_THECC	7.3e-22	48.57	To encode a PR protein, Belongs to the plant thionin family with the following m...	[more]
A0A061GI20_THECC	4.7e-21	46.67	To encode a PR protein, Belongs to the plant thionin family with the following m...	[more]
M5XJ03_PRUPE	1.2e-19	46.30	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa026656mg PE=4 SV=1	[more]
A0A059AI82_EUCGR	2.0e-19	45.71	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J03010 PE=4 SV=1	[more]

BLAST of Cla015423 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778729254\|ref\|XP_011659556.1\|	2.4e-50	88.89	PREDICTED: thionin-like protein 2 [Cucumis sativus]	[more]
gi\|659122243\|ref\|XP_008461039.1\|	2.6e-49	87.96	PREDICTED: thionin-like protein 2 [Cucumis melo]	[more]
gi\|694353623\|ref\|XP_009358204.1\|	8.0e-22	49.54	PREDICTED: thionin-like protein 2 [Pyrus x bretschneideri]	[more]
gi\|590617165\|ref\|XP_007023712.1\|	1.0e-21	48.57	To encode a PR protein, Belongs to the plant thionin family with the following m...	[more]
gi\|657943097\|ref\|XP_008353739.1\|	1.8e-21	48.15	PREDICTED: thionin-like protein 2 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU79242	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla015423	Cla015423.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU79242	WMU79242	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36312	FAMILY NOT NAMED	coord: 1..106 score: 8.5
None	No IPR available	PANTHER	PTHR36312:SF1	PLANT THIONIN FAMILY PROTEIN-RELATED	coord: 1..106 score: 8.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla015423	Csa7G441620	Cucumber (Chinese Long) v2	cuwmB566
Cla015423	ClCG09G002250	Watermelon (Charleston Gray)	wcgwmB007
Cla015423	CsGy7G019460	Cucumber (Gy14) v2	cgybwmB528
Cla015423	CsaV3_7G033050	Cucumber (Chinese Long) v3	cucwmB591
Cla015423	Bhi09G000096	Wax gourd	wgowmB585

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla015423	Cucurbita maxima (Rimu)	cmawmB043
Cla015423	Cucurbita maxima (Rimu)	cmawmB087
Cla015423	Cucurbita maxima (Rimu)	cmawmB220
Cla015423	Cucurbita maxima (Rimu)	cmawmB328
Cla015423	Cucurbita maxima (Rimu)	cmawmB405
Cla015423	Cucurbita moschata (Rifu)	cmowmB035
Cla015423	Cucurbita moschata (Rifu)	cmowmB077
Cla015423	Cucurbita moschata (Rifu)	cmowmB208
Cla015423	Cucurbita moschata (Rifu)	cmowmB322
Cla015423	Cucurbita moschata (Rifu)	cmowmB399
Cla015423	Wild cucumber (PI 183967)	cpiwmB585
Cla015423	Melon (DHL92) v3.5.1	mewmB198
Cla015423	Melon (DHL92) v3.5.1	mewmB344
Cla015423	Watermelon (Charleston Gray)	wcgwmB355
Cla015423	Cucurbita pepo (Zucchini)	cpewmB131
Cla015423	Cucurbita pepo (Zucchini)	cpewmB313
Cla015423	Cucurbita pepo (Zucchini)	cpewmB346
Cla015423	Cucurbita pepo (Zucchini)	cpewmB536
Cla015423	Bottle gourd (USVL1VR-Ls)	lsiwmB176
Cla015423	Bottle gourd (USVL1VR-Ls)	lsiwmB426
Cla015423	Cucumber (Gy14) v2	cgybwmB174
Cla015423	Melon (DHL92) v3.6.1	medwmB194
Cla015423	Melon (DHL92) v3.6.1	medwmB342
Cla015423	Silver-seed gourd	carwmB0117
Cla015423	Silver-seed gourd	carwmB0123
Cla015423	Silver-seed gourd	carwmB0187
Cla015423	Silver-seed gourd	carwmB1028
Cla015423	Cucumber (Chinese Long) v3	cucwmB198
Cla015423	Watermelon (97103) v2	wmwmbB037
Cla015423	Watermelon (97103) v2	wmwmbB041
Cla015423	Wax gourd	wgowmB167
Cla015423	Wax gourd	wgowmB651
Cla015423	Watermelon (97103) v1	wmwmB013
Cla015423	Watermelon (97103) v1	wmwmB034