ClCG09G002250 (gene) Watermelon (Charleston Gray)

Overview
NameClCG09G002250
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr09 : 2070005 .. 2070217 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGAGCAGCATGGGAATGAAATGGGCTTTAATGGCTTGCCTGGTGCTTAGCTCGCTCTCCATTGCCAATTCTGTATCTTTTCAAGATTGCTACAGCTCCTGCTTCGTGGTATGCGCCGTCGCGCCCGGCATCGCCTTCTCCGACTGCCCCAAGAGATGTCTGAACACTTGCAATGGCGGATCTACCAAGCCGCAAGGGAAGGCTCACTAA

mRNA sequence

ATGGAGAGCAGCATGGGAATGAAATGGGCTTTAATGGCTTGCCTGGTGCTTAGCTCGCTCTCCATTGCCAATTCTGTATCTTTTCAAGATTGCTACAGCTCCTGCTTCGTGGTATGCGCCGTCGCGCCCGGCATCGCCTTCTCCGACTGCCCCAAGAGATGTCTGAACACTTGCAATGGCGGATCTACCAAGCCGCAAGGGAAGGCTCACTAA

Coding sequence (CDS)

ATGGAGAGCAGCATGGGAATGAAATGGGCTTTAATGGCTTGCCTGGTGCTTAGCTCGCTCTCCATTGCCAATTCTGTATCTTTTCAAGATTGCTACAGCTCCTGCTTCGTGGTATGCGCCGTCGCGCCCGGCATCGCCTTCTCCGACTGCCCCAAGAGATGTCTGAACACTTGCAATGGCGGATCTACCAAGCCGCAAGGGAAGGCTCACTAA

Protein sequence

MESSMGMKWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTCNGGSTKPQGKAH
Homology
[Close]
BLAST of ClCG09G002250 vs. TrEMBL
Match: A0A0A0K781_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1)

HSP 1 Score: 91.7 bits (226), Expect = 3.9e-16
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1 

Query: 1  MESSMGMKWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          ME+ +  KWALMA L+L+SLS ANS SFQ+CY++CFV+CA+ PG+AFSDCP RCL  C
Sbjct: 1  MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQAC 58

[Close]
BLAST of ClCG09G002250 vs. TrEMBL
Match: A0A0A0KAC5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441620 PE=4 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.5e-11
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 1  MESS-MGMKWALMACLVLSSLSIANS-VSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          MESS MGMK AL A L LS LS+ANS  SFQDCY +C V CAV PGI  S+C KRC  TC
Sbjct: 1  MESSNMGMKCALTAWLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECLKRCFKTC 60

[Close]
BLAST of ClCG09G002250 vs. NCBI nr
Match: gi|659122243|ref|XP_008461039.1| (PREDICTED: thionin-like protein 2 [Cucumis melo])

HSP 1 Score: 91.7 bits (226), Expect = 5.6e-16
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1 

Query: 1  MESSMGMKWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          ME+ +  KWALMA L+L+SLS ANS SFQ+CY++CFV+CA+ PG+AFSDCP RCL  C
Sbjct: 1  MENILAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQAC 58

[Close]
BLAST of ClCG09G002250 vs. NCBI nr
Match: gi|778729254|ref|XP_011659556.1| (PREDICTED: thionin-like protein 2 [Cucumis sativus])

HSP 1 Score: 91.7 bits (226), Expect = 5.6e-16
Identity = 38/58 (65.52%), Postives = 48/58 (82.76%), Query Frame = 1 

Query: 1  MESSMGMKWALMACLVLSSLSIANSVSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          ME+ +  KWALMA L+L+SLS ANS SFQ+CY++CFV+CA+ PG+AFSDCP RCL  C
Sbjct: 1  MENVLAKKWALMAWLLLTSLSTANSTSFQECYATCFVICAITPGVAFSDCPLRCLQAC 58

[Close]
BLAST of ClCG09G002250 vs. NCBI nr
Match: gi|700190109|gb|KGN45342.1| (hypothetical protein Csa_7G441620 [Cucumis sativus])

HSP 1 Score: 74.3 bits (181), Expect = 9.3e-11
Identity = 40/60 (66.67%), Postives = 43/60 (71.67%), Query Frame = 1 

Query: 1  MESS-MGMKWALMACLVLSSLSIANS-VSFQDCYSSCFVVCAVAPGIAFSDCPKRCLNTC 59
          MESS MGMK AL A L LS LS+ANS  SFQDCY +C V CAV PGI  S+C KRC  TC
Sbjct: 1  MESSNMGMKCALTAWLFLSLLSMANSYTSFQDCYGTCVVTCAVTPGIPVSECLKRCFKTC 60

The following BLAST results are available for this feature:
BLAST of ClCG09G002250 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K781_CUCSA3.9e-1665.52Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441625 PE=4 SV=1[more]
A0A0A0KAC5_CUCSA6.5e-1166.67Uncharacterized protein OS=Cucumis sativus GN=Csa_7G441620 PE=4 SV=1[more]
BLAST of ClCG09G002250 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659122243|ref|XP_008461039.1|5.6e-1665.52PREDICTED: thionin-like protein 2 [Cucumis melo][more]
gi|778729254|ref|XP_011659556.1|5.6e-1665.52PREDICTED: thionin-like protein 2 [Cucumis sativus][more]
gi|700190109|gb|KGN45342.1|9.3e-1166.67hypothetical protein Csa_7G441620 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG09G002250.1ClCG09G002250.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG09G002250Cla015423Watermelon (97103) v1wcgwmB007
ClCG09G002250Cla97C09G164390Watermelon (97103) v2wcgwmbB035
ClCG09G002250Bhi09G000097Wax gourdwcgwgoB068
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG09G002250Watermelon (97103) v2wcgwmbB031
ClCG09G002250Wax gourdwcgwgoB026
ClCG09G002250Wax gourdwcgwgoB076
ClCG09G002250Watermelon (Charleston Gray)wcgwcgB026
ClCG09G002250Watermelon (Charleston Gray)wcgwcgB034
ClCG09G002250Cucurbita maxima (Rimu)cmawcgB042
ClCG09G002250Cucurbita maxima (Rimu)cmawcgB085
ClCG09G002250Cucurbita maxima (Rimu)cmawcgB216
ClCG09G002250Cucurbita maxima (Rimu)cmawcgB306
ClCG09G002250Cucurbita maxima (Rimu)cmawcgB376
ClCG09G002250Cucurbita moschata (Rifu)cmowcgB035
ClCG09G002250Cucurbita moschata (Rifu)cmowcgB077
ClCG09G002250Cucurbita moschata (Rifu)cmowcgB201
ClCG09G002250Cucurbita moschata (Rifu)cmowcgB299
ClCG09G002250Cucurbita moschata (Rifu)cmowcgB374
ClCG09G002250Wild cucumber (PI 183967)cpiwcgB553
ClCG09G002250Cucumber (Chinese Long) v2cuwcgB524
ClCG09G002250Melon (DHL92) v3.5.1mewcgB174
ClCG09G002250Melon (DHL92) v3.5.1mewcgB312
ClCG09G002250Watermelon (97103) v1wcgwmB024
ClCG09G002250Cucurbita pepo (Zucchini)cpewcgB126
ClCG09G002250Cucurbita pepo (Zucchini)cpewcgB313
ClCG09G002250Cucurbita pepo (Zucchini)cpewcgB281
ClCG09G002250Cucurbita pepo (Zucchini)cpewcgB483
ClCG09G002250Bottle gourd (USVL1VR-Ls)lsiwcgB160
ClCG09G002250Bottle gourd (USVL1VR-Ls)lsiwcgB387
ClCG09G002250Cucumber (Gy14) v2cgybwcgB166
ClCG09G002250Cucumber (Gy14) v2cgybwcgB484
ClCG09G002250Melon (DHL92) v3.6.1medwcgB168
ClCG09G002250Melon (DHL92) v3.6.1medwcgB307
ClCG09G002250Silver-seed gourdcarwcgB0117
ClCG09G002250Silver-seed gourdcarwcgB0123
ClCG09G002250Silver-seed gourdcarwcgB0190
ClCG09G002250Silver-seed gourdcarwcgB1001
ClCG09G002250Cucumber (Chinese Long) v3cucwcgB186
ClCG09G002250Cucumber (Chinese Long) v3cucwcgB546