Cla014695 (gene) Watermelon (97103) v1

Overview
NameCla014695
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUnknown Protein (AHRD V1)
LocationChr9 : 4980289 .. 4980648 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTGCAATCAAATCCCTAATTTTCATTCCTCTTCTTCTCCTTCTCTTCTTCTTCCAATCCCTACCCACTTCTGCCGCCGTTTGCGACGGCGCTTCCAATTCTCTCACCGGAATACTCCGCCGGAACATCCTTCAGACGGCGGCTCGTAGAATTGCAGACAACAATGTCGAACGCAAGATGAGTGTTCATATCAAAAGAGGTACAAGGGGCGGCCGCTCATCGTCGACGGGTTCATCGCCGATTCCGACAAGACCTGTATGGATTGGCACTGGCCGCCGTACATCGGCCGCGAATCGGAGCCGAGTCGCGTCCTTTGGCGTTGGATTTCTGCTCATTTTTTCGGGATTGTTCATGTGA

mRNA sequence

ATGGCTGCAATCAAATCCCTAATTTTCATTCCTCTTCTTCTCCTTCTCTTCTTCTTCCAATCCCTACCCACTTCTGCCGCCGTTTGCGACGGCGCTTCCAATTCTCTCACCGGAATACTCCGCCGGAACATCCTTCAGACGGCGGCTCGTAGAATTGCAGACAACAATGTCGAACGCAAGATGAGTGTTCATATCAAAAGAGGTACAAGGGGCGGCCGCTCATCGTCGACGGGTTCATCGCCGATTCCGACAAGACCTGTATGGATTGGCACTGGCCGCCGTACATCGGCCGCGAATCGGAGCCGAGTCGCGTCCTTTGGCGTTGGATTTCTGCTCATTTTTTCGGGATTGTTCATGTGA

Coding sequence (CDS)

ATGGCTGCAATCAAATCCCTAATTTTCATTCCTCTTCTTCTCCTTCTCTTCTTCTTCCAATCCCTACCCACTTCTGCCGCCGTTTGCGACGGCGCTTCCAATTCTCTCACCGGAATACTCCGCCGGAACATCCTTCAGACGGCGGCTCGTAGAATTGCAGACAACAATGTCGAACGCAAGATGAGTGTTCATATCAAAAGAGGTACAAGGGGCGGCCGCTCATCGTCGACGGGTTCATCGCCGATTCCGACAAGACCTGTATGGATTGGCACTGGCCGCCGTACATCGGCCGCGAATCGGAGCCGAGTCGCGTCCTTTGGCGTTGGATTTCTGCTCATTTTTTCGGGATTGTTCATGTGA

Protein sequence

MAAIKSLIFIPLLLLLFFFQSLPTSAAVCDGASNSLTGILRRNILQTAARRIADNNVERKMSVHIKRGTRGGRSSSTGSSPIPTRPVWIGTGRRTSAANRSRVASFGVGFLLIFSGLFM
Homology
[Close]
BLAST of Cla014695 vs. TrEMBL
Match: A0A0A0KAQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 9.6e-23
Identity = 72/119 (60.50%), Postives = 82/119 (68.91%), Query Frame = 1 

Query: 1   MAAIKSLIFIPLLLLLFFFQSLPTSAAVCDGASNSLTGILRRNILQTAARRIADNNVERK 60
           MAAIKSLI I LL LLFF +SL TSAA C GASNS+T +LRRNILQTA   IAD+  E K
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADS--EGK 60

Query: 61  MSVHIKRGTRGGRSSSTGSSPIPTRPVWIGTGRRTSAANRSRVASFGVGFLLIFSGLFM 120
           M+V IK+G   GR    G+          GTG R+SAANRSRV SFG+GFLL F GL +
Sbjct: 61  MNVRIKKGGL-GRFRPIGAG--------TGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]
BLAST of Cla014695 vs. NCBI nr
Match: gi|700189653|gb|KGN44886.1| (hypothetical protein Csa_7G394060 [Cucumis sativus])

HSP 1 Score: 114.4 bits (285), Expect = 1.4e-22
Identity = 72/119 (60.50%), Postives = 82/119 (68.91%), Query Frame = 1 

Query: 1   MAAIKSLIFIPLLLLLFFFQSLPTSAAVCDGASNSLTGILRRNILQTAARRIADNNVERK 60
           MAAIKSLI I LL LLFF +SL TSAA C GASNS+T +LRRNILQTA   IAD+  E K
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADS--EGK 60

Query: 61  MSVHIKRGTRGGRSSSTGSSPIPTRPVWIGTGRRTSAANRSRVASFGVGFLLIFSGLFM 120
           M+V IK+G   GR    G+          GTG R+SAANRSRV SFG+GFLL F GL +
Sbjct: 61  MNVRIKKGGL-GRFRPIGAG--------TGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]
BLAST of Cla014695 vs. NCBI nr
Match: gi|659101552|ref|XP_008451666.1| (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 97.8 bits (242), Expect = 1.3e-17
Identity = 70/142 (49.30%), Postives = 79/142 (55.63%), Query Frame = 1 

Query: 1   MAAIKSLIFIPLLLLLFFFQSL-PTSAAVCDGASNSLTGILRRNILQTAARRIADNNVE- 60
           MAAIK+ IFI LL LLFF++ L P    V    SNS+TG+L R ILQTAA + A +NVE 
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  ---RKMS-VHIKRGTRGGRSSSTGS-----------------SPIPTRPVWIGTGRRTSA 120
              RKM+ VH+K GT GG     G                  S   T     GTG   SA
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

The following BLAST results are available for this feature:
BLAST of Cla014695 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAQ7_CUCSA9.6e-2360.50Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394060 PE=4 SV=1[more]
BLAST of Cla014695 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189653|gb|KGN44886.1|1.4e-2260.50hypothetical protein Csa_7G394060 [Cucumis sativus][more]
gi|659101552|ref|XP_008451666.1|1.3e-1749.30PREDICTED: protein no-on-transient A-like [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla014695Cla014695.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla014695Cla97C09G168900Watermelon (97103) v2wmwmbB041
Cla014695ClCG09G006350Watermelon (Charleston Gray)wcgwmB007
Cla014695CSPI07G17020Wild cucumber (PI 183967)cpiwmB587
Cla014695Cucsa.025220Cucumber (Gy14) v1cgywmB672
Cla014695CmaCh17G011250Cucurbita maxima (Rimu)cmawmB328
Cla014695Lsi02G023570Bottle gourd (USVL1VR-Ls)lsiwmB175
Cla014695Cp4.1LG12g05430Cucurbita pepo (Zucchini)cpewmB131
Cla014695CsGy7G015460Cucumber (Gy14) v2cgybwmB530
Cla014695Carg07202Silver-seed gourdcarwmB0106
Cla014695Carg22161Silver-seed gourdcarwmB0861
Cla014695CsaV3_7G028780Cucumber (Chinese Long) v3cucwmB593
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla014695Cucurbita pepo (Zucchini)cpewmB311
Cla014695Cucurbita pepo (Zucchini)cpewmB824
Cla014695Melon (DHL92) v3.6.1medwmB085
Cla014695Melon (DHL92) v3.6.1medwmB181
Cla014695Watermelon (97103) v2wmwmbB027
Cla014695Watermelon (97103) v2wmwmbB030
Cla014695Wax gourdwgowmB161
Cla014695Wax gourdwgowmB170
Cla014695Watermelon (97103) v1wmwmB022
Cla014695Watermelon (97103) v1wmwmB037
Cla014695Cucurbita moschata (Rifu)cmowmB843
Cla014695Cucurbita maxima (Rimu)cmawmB780
Cla014695Cucurbita maxima (Rimu)cmawmB856
Cla014695Cucurbita maxima (Rimu)cmawmB861
Cla014695Cucurbita moschata (Rifu)cmowmB322
Cla014695Cucurbita moschata (Rifu)cmowmB848
Cla014695Melon (DHL92) v3.5.1mewmB088
Cla014695Watermelon (Charleston Gray)wcgwmB319
Cla014695Cucumber (Chinese Long) v2cuwmB191
Cla014695Cucumber (Chinese Long) v2cuwmB568