Cp4.1LG12g05430 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG12g05430
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG12 : 8165489 .. 8165809 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCGCTCTCAAATCCCTAGTTTCCGTAGCTCTTCTGGCTCTTCTCTTATTCTCCGAATCCCTAACAGCTTCTGCCGTCGATCGCAGCGGCGATTCAAATTCTCTCACCGGGATGCTCCGCCGAAACGTCCTTCAGACGGCGGCTCATCAGATTGCAGATAACAGTGTCGAGTCCTCCCCCGAAAGGAAGATGAATGTTCATATCAAAAGGCGGATGCGACCAGTAGCAACTGGCACCCGTTCCTCGGCGGCGAATCGGAGCCGAATCGCTTCCATTGGCGTTGGATCTGTGCTCGTTGTTTTAGGGCTGTTCCTGTGA

mRNA sequence

ATGGCCGCTCTCAAATCCCTAGTTTCCGTAGCTCTTCTGGCTCTTCTCTTATTCTCCGAATCCCTAACAGCTTCTGCCGTCGATCGCAGCGGCGATTCAAATTCTCTCACCGGGATGCTCCGCCGAAACGTCCTTCAGACGGCGGCTCATCAGATTGCAGATAACAGTGTCGAGTCCTCCCCCGAAAGGAAGATGAATGTTCATATCAAAAGGCGGATGCGACCAGTAGCAACTGGCACCCGTTCCTCGGCGGCGAATCGGAGCCGAATCGCTTCCATTGGCGTTGGATCTGTGCTCGTTGTTTTAGGGCTGTTCCTGTGA

Coding sequence (CDS)

ATGGCCGCTCTCAAATCCCTAGTTTCCGTAGCTCTTCTGGCTCTTCTCTTATTCTCCGAATCCCTAACAGCTTCTGCCGTCGATCGCAGCGGCGATTCAAATTCTCTCACCGGGATGCTCCGCCGAAACGTCCTTCAGACGGCGGCTCATCAGATTGCAGATAACAGTGTCGAGTCCTCCCCCGAAAGGAAGATGAATGTTCATATCAAAAGGCGGATGCGACCAGTAGCAACTGGCACCCGTTCCTCGGCGGCGAATCGGAGCCGAATCGCTTCCATTGGCGTTGGATCTGTGCTCGTTGTTTTAGGGCTGTTCCTGTGA

Protein sequence

MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESSPERKMNVHIKRRMRPVATGTRSSAANRSRIASIGVGSVLVVLGLFL
Homology
[Close]
BLAST of Cp4.1LG12g05430 vs. TrEMBL
Match: A0A0A0KAQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394060 PE=4 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.4e-19
Identity = 66/114 (57.89%), Postives = 81/114 (71.05%), Query Frame = 1 

Query: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60
           MAA+KSL+S++LLALL FSESL+ SA +  G SNS+T MLRRN+LQTA H+IAD+     
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADS----- 60

Query: 61  PERKMNVHIKR----RMRPV----ATGTRSSAANRSRIASIGVGSVLVVLGLFL 107
            E KMNV IK+    R RP+     TGTRSSAANRSR+ S G+G +L   GL L
Sbjct: 61  -EGKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]
BLAST of Cp4.1LG12g05430 vs. TrEMBL
Match: A0A0A0K929_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394020 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.6e-07
Identity = 57/122 (46.72%), Postives = 72/122 (59.02%), Query Frame = 1 

Query: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60
           MAA++ L+S+A LAL  FSESL  S        +SLTG+  R +L TAAH+I D SVE S
Sbjct: 1   MAAIRPLLSIAFLALFFFSESLLTS--------HSLTGIPHRTILNTAAHRIVDGSVEYS 60

Query: 61  PE--RKMN-VHI----KRRMRPVATGT-----RSSAANR-SRIASIGVGSVL---VVLGL 107
               RK N +HI    KRR  P+   +       SAANR S +AS+ VGS+L   + LGL
Sbjct: 61  SYQIRKSNKLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGL 114

[Close]
BLAST of Cp4.1LG12g05430 vs. NCBI nr
Match: gi|700189653|gb|KGN44886.1| (hypothetical protein Csa_7G394060 [Cucumis sativus])

HSP 1 Score: 102.1 bits (253), Expect = 6.3e-19
Identity = 66/114 (57.89%), Postives = 81/114 (71.05%), Query Frame = 1 

Query: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60
           MAA+KSL+S++LLALL FSESL+ SA +  G SNS+T MLRRN+LQTA H+IAD+     
Sbjct: 1   MAAIKSLISISLLALLFFSESLSTSAANCRGASNSVTAMLRRNILQTATHEIADS----- 60

Query: 61  PERKMNVHIKR----RMRPV----ATGTRSSAANRSRIASIGVGSVLVVLGLFL 107
            E KMNV IK+    R RP+     TGTRSSAANRSR+ S G+G +L   GL L
Sbjct: 61  -EGKMNVRIKKGGLGRFRPIGAGTGTGTRSSAANRSRVDSFGLGFLLFFFGLVL 108

[Close]
BLAST of Cp4.1LG12g05430 vs. NCBI nr
Match: gi|659101552|ref|XP_008451666.1| (PREDICTED: protein no-on-transient A-like [Cucumis melo])

HSP 1 Score: 70.9 bits (172), Expect = 1.6e-09
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = 1 

Query: 1   MAALKSLVSVALLALLLFSESLTASAVD-RSGDSNSLTGMLRRNVLQTAAHQIADNSVES 60
           MAA+K+ + ++LLALL F E L       R   SNS+TG+L R +LQTAAH+ A ++VES
Sbjct: 1   MAAIKTTIFISLLALLFFYEYLYPLPPPVRGAHSNSVTGVLHRKILQTAAHKTAGDNVES 60

Query: 61  SPERKM-NVHIK----------------------------------RRMRPVATGTRSSA 107
           S ERKM NVH+K                                    +    TG   SA
Sbjct: 61  SSERKMNNVHMKIGTSGGGGGGRGGGGGGGRGGRGGGGGRDRSSKRTNLGGGGTGHHKSA 120

[Close]
BLAST of Cp4.1LG12g05430 vs. NCBI nr
Match: gi|659101524|ref|XP_008451651.1| (PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cucumis melo])

HSP 1 Score: 69.3 bits (168), Expect = 4.5e-09
Identity = 51/100 (51.00%), Postives = 64/100 (64.00%), Query Frame = 1 

Query: 1  MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60
          MAA++ LVS+ALLALL FSESL  S        +SLTG+  RN+L T AH+I + SVESS
Sbjct: 1  MAAIRPLVSIALLALLFFSESLLTS--------HSLTGIPHRNILHTVAHRIVNGSVESS 60

Query: 61 PERKMN-VHIK--RRMRPVATG-----TRSSAANRSRIAS 93
           +RK N +H K  RR+RP+           SA NRSR+AS
Sbjct: 61 YQRKSNKLHTKDRRRIRPILISGSNGMHHKSAENRSRVAS 92

[Close]
BLAST of Cp4.1LG12g05430 vs. NCBI nr
Match: gi|700189649|gb|KGN44882.1| (hypothetical protein Csa_7G394020 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 9.4e-07
Identity = 57/122 (46.72%), Postives = 72/122 (59.02%), Query Frame = 1 

Query: 1   MAALKSLVSVALLALLLFSESLTASAVDRSGDSNSLTGMLRRNVLQTAAHQIADNSVESS 60
           MAA++ L+S+A LAL  FSESL  S        +SLTG+  R +L TAAH+I D SVE S
Sbjct: 1   MAAIRPLLSIAFLALFFFSESLLTS--------HSLTGIPHRTILNTAAHRIVDGSVEYS 60

Query: 61  PE--RKMN-VHI----KRRMRPVATGT-----RSSAANR-SRIASIGVGSVL---VVLGL 107
               RK N +HI    KRR  P+   +       SAANR S +AS+ VGS+L   + LGL
Sbjct: 61  SYQIRKSNKLHIKDIRKRRSGPILVSSSNGNHHKSAANRPSPVASLEVGSMLCICIFLGL 114

The following BLAST results are available for this feature:
BLAST of Cp4.1LG12g05430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g05430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KAQ7_CUCSA4.4e-1957.89Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394060 PE=4 SV=1[more]
A0A0A0K929_CUCSA6.6e-0746.72Uncharacterized protein OS=Cucumis sativus GN=Csa_7G394020 PE=4 SV=1[more]
BLAST of Cp4.1LG12g05430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG12g05430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700189653|gb|KGN44886.1|6.3e-1957.89hypothetical protein Csa_7G394060 [Cucumis sativus][more]
gi|659101552|ref|XP_008451666.1|1.6e-0940.14PREDICTED: protein no-on-transient A-like [Cucumis melo][more]
gi|659101524|ref|XP_008451651.1|4.5e-0951.00PREDICTED: RING finger and CHY zinc finger domain-containing protein 1-like [Cuc... [more]
gi|700189649|gb|KGN44882.1|9.4e-0746.72hypothetical protein Csa_7G394020 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0008270 zinc ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG12g05430.1Cp4.1LG12g05430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG12g05430CmaCh17G011250Cucurbita maxima (Rimu)cmacpeB371
Cp4.1LG12g05430Cla014695Watermelon (97103) v1cpewmB131
Cp4.1LG12g05430ClCG09G006350Watermelon (Charleston Gray)cpewcgB126
Cp4.1LG12g05430CSPI07G17020Wild cucumber (PI 183967)cpecpiB163
Cp4.1LG12g05430Lsi02G023570Bottle gourd (USVL1VR-Ls)cpelsiB113
Cp4.1LG12g05430CsaV3_7G028780Cucumber (Chinese Long) v3cpecucB0188
Cp4.1LG12g05430BhiUN245G40Wax gourdcpewgoB0187
Cp4.1LG12g05430Carg07202Silver-seed gourdcarcpeB0158
Cp4.1LG12g05430Carg22161Silver-seed gourdcarcpeB1198
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cp4.1LG12g05430Cp4.1LG17g06910Cucurbita pepo (Zucchini)cpecpeB157
The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG12g05430Cucurbita pepo (Zucchini)cpecpeB193
Cp4.1LG12g05430Cucumber (Gy14) v1cgycpeB0669
Cp4.1LG12g05430Cucumber (Gy14) v1cgycpeB0983
Cp4.1LG12g05430Cucurbita maxima (Rimu)cmacpeB260
Cp4.1LG12g05430Cucurbita maxima (Rimu)cmacpeB902
Cp4.1LG12g05430Cucurbita moschata (Rifu)cmocpeB224
Cp4.1LG12g05430Cucurbita moschata (Rifu)cmocpeB335
Cp4.1LG12g05430Cucurbita moschata (Rifu)cmocpeB336
Cp4.1LG12g05430Cucurbita moschata (Rifu)cmocpeB839
Cp4.1LG12g05430Wild cucumber (PI 183967)cpecpiB140
Cp4.1LG12g05430Cucumber (Chinese Long) v2cpecuB161
Cp4.1LG12g05430Watermelon (97103) v1cpewmB153
Cp4.1LG12g05430Watermelon (97103) v1cpewmB160
Cp4.1LG12g05430Melon (DHL92) v3.5.1cpemeB144
Cp4.1LG12g05430Cucumber (Gy14) v2cgybcpeB309
Cp4.1LG12g05430Cucumber (Gy14) v2cgybcpeB906
Cp4.1LG12g05430Melon (DHL92) v3.6.1cpemedB143
Cp4.1LG12g05430Silver-seed gourdcarcpeB1199
Cp4.1LG12g05430Wax gourdcpewgoB0193